Wall clock time and date at job start Mon Mar 30 2020 02:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 O 1.42899 * 109.47124 * 174.99775 * 12 9 7 14 14 C 1.35984 * 116.99673 * 180.02562 * 13 12 9 15 15 C 1.38696 * 120.00373 * 359.72209 * 14 13 12 16 16 C 1.38133 * 120.00184 * 179.77002 * 15 14 13 17 17 C 1.38694 * 119.99586 * 0.50595 * 16 15 14 18 18 O 1.35984 * 120.00108 * 179.72540 * 17 16 15 19 19 C 1.38701 * 120.00564 * 359.74858 * 17 16 15 20 20 C 1.38135 * 119.99680 * 0.02562 * 19 17 16 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 23 23 H 1.08999 * 109.47029 * 294.99679 * 12 9 7 24 24 H 1.09005 * 109.47152 * 54.99424 * 12 9 7 25 25 H 1.08005 * 119.99990 * 0.02562 * 15 14 13 26 26 H 1.07996 * 120.00017 * 180.23218 * 16 15 14 27 27 H 0.96707 * 114.00074 * 270.02649 * 18 17 16 28 28 H 1.07993 * 120.00454 * 179.97438 * 19 17 16 29 29 H 1.07990 * 120.00097 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 8 1.5346 -4.8963 0.1149 14 6 2.2758 -6.0363 0.1311 15 6 3.6573 -5.9667 0.0310 16 6 4.4106 -7.1244 0.0521 17 6 3.7845 -8.3571 0.1629 18 8 4.5255 -9.4971 0.1782 19 6 2.4025 -8.4271 0.2577 20 6 1.6496 -7.2690 0.2412 21 1 -0.4850 -0.8401 -0.0004 22 1 0.9223 -2.5282 -1.9998 23 1 2.8121 -3.6556 -0.9324 24 1 2.9288 -3.5556 0.8409 25 1 4.1446 -5.0071 -0.0594 26 1 5.4866 -7.0700 -0.0220 27 1 4.6821 -9.8763 -0.6976 28 1 1.9150 -9.3869 0.3436 29 1 0.5736 -7.3235 0.3146 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260714408.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:25 Heat of formation + Delta-G solvation = -118.194155 kcal Electronic energy + Delta-G solvation = -14719.102699 eV Core-core repulsion = 11993.479409 eV Total energy + Delta-G solvation = -2725.623289 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.088 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.04629 -38.33425 -36.30142 -35.29487 -32.24048 -31.09736 -29.49215 -28.07260 -24.75651 -22.90811 -22.07250 -20.99700 -18.43857 -18.06003 -16.99600 -16.22913 -15.61694 -15.35991 -14.89837 -14.44830 -13.85209 -13.44704 -13.39456 -13.20364 -12.72751 -12.35508 -12.03029 -11.78020 -11.43553 -10.86518 -10.43774 -10.40327 -10.19926 -10.16260 -9.37318 -9.04045 -8.59646 -8.26987 -7.86637 -6.49386 -4.35429 1.31453 1.38376 3.35464 3.36989 3.56356 3.63848 3.68807 4.25313 4.43799 4.87061 4.93080 5.21405 5.28647 5.47727 5.65510 5.69681 5.72919 5.97023 6.03261 6.09722 6.30412 6.44061 6.45742 6.68488 7.26203 7.57582 7.72606 7.84909 8.18106 8.70781 8.98381 9.51615 10.91505 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.061394 B = 0.005346 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.964524 B = 5235.873618 C = 5592.898545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.037 3.963 3 Si 1.071 2.929 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.655 4.655 8 H 0.053 0.947 9 C 0.219 3.781 10 H 0.060 0.940 11 O -0.575 6.575 12 C 0.040 3.960 13 O -0.306 6.306 14 C 0.136 3.864 15 C -0.199 4.199 16 C -0.102 4.102 17 C 0.047 3.953 18 O -0.500 6.500 19 C -0.105 4.105 20 C -0.146 4.146 21 H 0.286 0.714 22 H 0.354 0.646 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.382 0.618 28 H 0.131 0.869 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 -13.426 -1.763 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.173 4.173 3 Si 0.898 3.102 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.693 4.693 8 H 0.071 0.929 9 C 0.162 3.838 10 H 0.078 0.922 11 O -0.379 6.379 12 C -0.035 4.035 13 O -0.219 6.219 14 C 0.089 3.911 15 C -0.217 4.217 16 C -0.121 4.121 17 C 0.002 3.998 18 O -0.309 6.309 19 C -0.123 4.123 20 C -0.164 4.164 21 H 0.098 0.902 22 H 0.199 0.801 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.151 0.849 26 H 0.145 0.855 27 H 0.236 0.764 28 H 0.149 0.851 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.440 -11.704 -0.673 13.376 hybrid contribution 1.106 -1.694 -0.861 2.199 sum 7.546 -13.398 -1.534 15.453 Atomic orbital electron populations 1.70631 1.06932 1.32512 1.41773 1.25854 0.96452 1.02520 0.92428 0.83541 0.74920 0.75108 0.76631 1.20538 1.21286 1.21273 1.22241 0.94449 0.91713 1.60850 0.92883 1.19637 0.88662 0.89145 0.86401 0.92206 1.86522 1.39054 1.96365 1.15946 1.24007 0.97484 0.81697 1.00297 1.86265 1.36111 1.13027 1.86510 1.19281 0.90110 0.87774 0.93899 1.21268 0.93093 0.99521 1.07868 1.21176 1.00129 0.91507 0.99253 1.18271 0.89464 0.85632 1.06393 1.84879 1.73001 1.39220 1.33751 1.21162 0.92865 0.98336 0.99940 1.20363 1.00659 0.89348 1.06073 0.90200 0.80074 0.92766 0.92142 0.84869 0.85496 0.76410 0.85120 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.62 13.53 55.43 0.75 -25.87 15 2 C 0.04 1.04 5.40 -17.82 -0.10 0.95 15 3 Si 1.07 24.24 29.90 -169.99 -5.08 19.15 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.19 7.11 56.52 0.40 -5.78 15 6 H -0.29 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.66 -17.74 8.76 -34.44 -0.30 -18.04 15 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 15 9 C 0.22 5.52 2.71 -27.88 -0.08 5.45 15 10 H 0.06 1.65 8.01 -51.93 -0.42 1.23 15 11 O -0.57 -14.58 11.98 -40.06 -0.48 -15.06 15 12 C 0.04 0.83 4.31 37.16 0.16 0.99 15 13 O -0.31 -6.22 10.10 -24.52 -0.25 -6.46 15 14 C 0.14 2.34 6.69 -39.24 -0.26 2.08 15 15 C -0.20 -3.06 9.03 -39.45 -0.36 -3.41 15 16 C -0.10 -1.37 9.98 -39.45 -0.39 -1.77 15 17 C 0.05 0.61 6.70 -39.24 -0.26 0.34 15 18 O -0.50 -5.57 13.50 -19.69 -0.27 -5.84 15 19 C -0.10 -1.35 9.98 -39.45 -0.39 -1.74 15 20 C -0.15 -2.17 9.98 -39.45 -0.39 -2.56 15 21 H 0.29 8.80 6.47 -40.82 -0.26 8.53 15 22 H 0.35 7.91 9.04 45.56 0.41 8.32 15 23 H 0.05 1.05 7.65 -51.93 -0.40 0.65 15 24 H 0.06 1.21 7.67 -51.93 -0.40 0.81 15 25 H 0.13 1.98 6.29 -52.48 -0.33 1.65 15 26 H 0.13 1.43 8.06 -52.49 -0.42 1.01 15 27 H 0.38 2.35 9.07 45.56 0.41 2.76 15 28 H 0.13 1.36 8.06 -52.49 -0.42 0.93 15 29 H 0.13 1.84 8.06 -52.49 -0.42 1.42 15 LS Contribution 260.00 15.07 3.92 3.92 Total: -1.00 -31.87 260.00 -5.24 -37.11 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -1.45 Total: 10.77 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.38 Total: -17.72 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.75 Total: -25.87 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.99 Total: -27.36 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.15 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.87 -5.24 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260714408.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.087 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds