Wall clock time and date at job start Mon Mar 30 2020 02:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 C 1.33917 * 125.84371 * 124.71691 * 11 10 9 13 13 N 1.39540 * 107.27044 * 179.85456 * 12 11 10 14 14 C 1.34875 * 106.07927 * 0.40403 * 13 12 11 15 15 N 1.31922 * 109.25147 * 359.75282 * 14 13 12 16 16 S 1.76907 * 110.04560 * 179.75020 * 14 13 12 17 17 C 1.81813 * 96.10833 * 359.97438 * 16 14 13 18 18 C 1.45969 * 136.74227 * 180.02562 * 13 12 11 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 23 23 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 24 24 H 1.08002 * 126.36857 * 359.96977 * 12 11 10 25 25 H 1.09007 * 110.49359 * 241.33426 * 17 16 14 26 26 H 1.08997 * 110.58814 * 118.75146 * 17 16 14 27 27 H 1.09001 * 108.89275 * 301.15740 * 18 13 12 28 28 H 1.08992 * 108.89487 * 59.58487 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4918 -4.9672 -0.0033 12 6 1.6348 -5.9549 -0.8962 13 7 0.7568 -6.9755 -0.5293 14 6 0.1168 -6.5386 0.5746 15 7 0.5594 -5.3357 0.8867 16 16 -1.0371 -7.7594 1.1295 17 6 -0.6809 -8.9710 -0.1784 18 6 0.3958 -8.2983 -1.0297 19 1 -0.4849 0.8400 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6247 -2.5562 -0.8920 22 1 2.8720 -3.6035 -0.8927 23 1 2.8719 -3.6051 0.8873 24 1 2.3064 -5.9613 -1.7420 25 1 -1.5733 -9.1629 -0.7742 26 1 -0.3033 -9.8989 0.2511 27 1 0.0284 -8.2010 -2.0513 28 1 1.2853 -8.9281 -1.0360 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261203946.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:49 Heat of formation + Delta-G solvation = 38.460256 kcal Electronic energy + Delta-G solvation = -12647.053308 eV Core-core repulsion = 10403.268686 eV Total energy + Delta-G solvation = -2243.784622 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.00210 -37.00541 -35.51127 -33.31645 -31.35787 -29.93903 -26.94187 -25.39144 -23.56624 -21.99410 -20.86496 -18.82165 -18.42152 -17.42635 -16.57605 -16.41640 -15.52008 -15.23488 -15.08028 -14.52303 -14.32108 -13.94070 -13.80623 -13.22808 -12.94157 -12.82026 -12.46677 -11.95578 -11.72665 -11.67973 -11.24889 -10.87191 -10.55269 -10.51552 -10.20513 -8.48844 -8.16775 -6.30227 -0.00728 0.79082 0.99547 1.40345 1.43936 1.55043 1.69639 1.98442 2.43370 3.11811 3.15224 3.73821 3.75561 4.13028 4.29883 4.43080 4.52637 4.53010 4.77903 4.87102 4.98531 5.14493 5.51076 5.63087 5.70494 5.87662 5.97050 6.24466 6.87950 6.96125 7.39097 8.95612 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.065862 B = 0.005384 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.032265 B = 5199.810528 C = 5438.243885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.043 3.957 10 C -0.019 4.019 11 C 0.005 3.995 12 C -0.025 4.025 13 N -0.486 5.486 14 C 0.162 3.838 15 N -0.510 5.510 16 S -0.040 6.040 17 C -0.099 4.099 18 C 0.085 3.915 19 H 0.263 0.737 20 H -0.020 1.020 21 H -0.020 1.020 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.214 0.786 25 H 0.151 0.849 26 H 0.157 0.843 27 H 0.121 0.879 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.236 -22.153 -4.716 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.005 3.995 10 C -0.058 4.058 11 C -0.124 4.124 12 C -0.157 4.157 13 N -0.176 5.176 14 C -0.209 4.209 15 N -0.233 5.233 16 S 0.188 5.812 17 C -0.247 4.247 18 C -0.036 4.036 19 H 0.071 0.929 20 H -0.002 1.002 21 H -0.001 1.001 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.230 0.770 25 H 0.169 0.831 26 H 0.175 0.825 27 H 0.139 0.861 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.076 -21.802 -3.264 22.045 hybrid contribution 1.043 0.962 -1.335 1.949 sum 1.119 -20.839 -4.599 21.370 Atomic orbital electron populations 1.70167 1.08212 1.27718 1.51739 1.26128 0.95780 1.03836 0.94638 0.85326 0.78550 0.77729 0.78671 1.19283 1.20985 1.18376 1.21749 0.93820 0.92004 1.50518 0.91269 1.18775 0.93985 0.92723 0.94005 1.19890 0.96300 0.87808 1.01783 1.21059 0.98723 0.98170 0.94467 1.22933 1.00759 0.87685 1.04314 1.47231 1.31641 1.15972 1.22785 1.26107 1.03504 0.97657 0.93616 1.70305 1.13898 1.09643 1.29494 1.86067 1.46147 1.09849 1.39087 1.24685 1.03243 1.00080 0.96661 1.21994 1.01572 0.79753 1.00290 0.92879 1.00176 1.00118 0.89331 0.92321 0.76979 0.83093 0.82528 0.86063 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.44 13.29 21.45 0.28 -61.15 15 2 C -0.01 -0.41 5.46 84.66 0.46 0.05 15 3 Si 0.97 46.34 29.54 68.60 2.03 48.37 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 15 5 H -0.28 -13.29 7.11 99.48 0.71 -12.59 15 6 H -0.26 -11.68 7.11 99.48 0.71 -10.98 15 7 C -0.54 -33.03 9.11 25.60 0.23 -32.80 15 8 H 0.07 3.92 7.74 -2.91 -0.02 3.89 15 9 C 0.04 2.54 4.94 29.85 0.15 2.69 15 10 C -0.02 -0.91 5.71 29.85 0.17 -0.74 15 11 C 0.01 0.23 6.32 41.24 0.26 0.49 15 12 C -0.02 -0.81 11.88 82.48 0.98 0.17 15 13 N -0.49 -13.66 3.39 -523.83 -1.78 -15.44 15 14 C 0.16 5.91 8.90 179.90 1.60 7.51 15 15 N -0.51 -24.12 11.30 -184.93 -2.09 -26.21 15 16 S -0.04 -0.98 23.24 -56.49 -1.31 -2.30 15 17 C -0.10 -0.94 7.37 71.93 0.53 -0.41 15 18 C 0.09 1.11 7.44 86.43 0.64 1.75 15 19 H 0.26 16.03 8.31 -92.71 -0.77 15.26 15 20 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 15 21 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 15 22 H 0.09 3.60 8.10 -2.39 -0.02 3.58 15 23 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 24 H 0.21 4.93 8.06 -2.91 -0.02 4.91 15 25 H 0.15 0.63 8.14 -2.38 -0.02 0.61 15 26 H 0.16 0.46 8.14 -2.39 -0.02 0.45 15 27 H 0.12 1.08 8.14 -2.39 -0.02 1.06 15 28 H 0.13 0.95 8.14 -2.39 -0.02 0.93 15 Total: -1.00 -85.55 258.41 3.31 -82.24 By element: Atomic # 1 Polarization: -5.37 SS G_CDS: 1.15 Total: -4.22 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: 5.03 Total: -21.29 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -3.58 Total: -102.80 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -1.31 Total: -2.30 kcal Total: -85.55 3.31 -82.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261203946.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.697 kcal (2) G-P(sol) polarization free energy of solvation -85.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds