Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76196 * 100.00176 * 2 1 4 4 C 1.39500 * 119.88422 * 359.72968 * 3 2 1 5 5 C 1.36311 * 120.33825 * 180.27783 * 4 3 2 6 6 C 1.40964 * 120.10386 * 359.97438 * 5 4 3 7 7 C 1.41056 * 120.11492 * 180.02562 * 6 5 4 8 8 H 1.08000 * 119.99891 * 24.66141 * 7 6 5 9 9 C 1.39788 * 119.99904 * 204.65285 * 7 6 5 10 10 N 1.30955 * 119.99955 * 18.02792 * 9 7 6 11 11 Si 1.86800 * 120.00083 * 198.02336 * 9 7 6 12 12 H 1.48503 * 109.46890 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46674 * 120.00043 * 11 9 7 14 14 H 1.48496 * 109.47083 * 240.00569 * 11 9 7 15 15 C 1.40851 * 119.76929 * 0.02562 * 6 5 4 16 16 C 1.37787 * 119.66613 * 359.97438 * 15 6 5 17 17 N 1.39831 * 120.05600 * 179.97438 * 16 15 6 18 18 N 1.36599 * 119.99695 * 0.02562 * 17 16 15 19 19 H 1.09001 * 109.47342 * 299.99405 * 1 2 3 20 20 H 1.09002 * 109.47014 * 59.99720 * 1 2 3 21 21 H 1.09002 * 109.47378 * 179.97438 * 1 2 3 22 22 H 1.07998 * 119.82922 * 0.24753 * 4 3 2 23 23 H 1.08005 * 119.94858 * 179.97438 * 5 4 3 24 24 H 0.96992 * 120.00429 * 179.97438 * 10 9 7 25 25 H 1.08004 * 120.16646 * 180.02562 * 15 6 5 26 26 H 0.96991 * 120.00001 * 180.02562 * 17 16 15 27 27 H 1.00905 * 111.00023 * 56.04515 * 18 17 16 28 28 H 1.00899 * 110.99845 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 1.0456 2.6297 -0.0057 5 6 1.2717 3.9739 -0.0115 6 6 2.5916 4.4689 -0.0111 7 6 2.8258 5.8599 -0.0165 8 1 2.0766 6.5351 0.3695 9 6 4.0278 6.3642 -0.5214 10 7 4.7756 5.6202 -1.2974 11 14 4.5673 8.0997 -0.0894 12 1 3.5539 8.7269 0.7965 13 1 5.8753 8.0511 0.6122 14 1 4.7018 8.9002 -1.3329 15 6 3.6757 3.5697 -0.0054 16 6 3.4362 2.2128 0.0004 17 7 4.5063 1.3128 0.0056 18 7 5.7904 1.7786 0.0054 19 1 -0.3634 0.5137 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 0.0325 2.2553 -0.0061 23 1 0.4382 4.6609 -0.0163 24 1 5.6094 5.9702 -1.6481 25 1 4.6895 3.9419 -0.0047 26 1 4.3368 0.3578 0.0093 27 1 5.9499 2.3997 0.7845 28 1 6.4515 1.0163 0.0091 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307082030.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = 26.009900 kcal Electronic energy + Delta-G solvation = -13059.774511 eV Core-core repulsion = 10815.450001 eV Total energy + Delta-G solvation = -2244.324510 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.74756 -37.26673 -35.44365 -31.91816 -31.55098 -29.44836 -27.98435 -26.85339 -23.04109 -22.00559 -19.70466 -18.24604 -17.96609 -17.25739 -16.60413 -15.83492 -15.52063 -14.97577 -14.61713 -14.58219 -14.23947 -13.74418 -13.48563 -13.02739 -12.96117 -12.62642 -12.31851 -11.95173 -11.78928 -11.42492 -11.06025 -10.94417 -10.00337 -9.72945 -8.60801 -8.42947 -7.58580 -6.23313 0.94134 1.10635 1.31521 1.41567 1.52482 1.56879 1.82200 2.24276 2.45091 2.75070 3.79246 4.32987 4.36641 4.37376 4.40327 4.86353 4.91415 5.16837 5.20618 5.38827 5.55820 5.77630 5.84214 6.01218 6.14674 6.37139 6.60117 6.93120 7.03584 7.12480 7.59440 8.37327 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.037792 B = 0.008755 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.722910 B = 3197.565793 C = 3847.556569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.179 6.179 3 C -0.282 4.282 4 C -0.061 4.061 5 C -0.267 4.267 6 C 0.108 3.892 7 C -0.492 4.492 8 H 0.076 0.924 9 C 0.037 3.963 10 N -0.807 5.807 11 Si 0.981 3.019 12 H -0.259 1.259 13 H -0.264 1.264 14 H -0.267 1.267 15 C -0.243 4.243 16 C 0.243 3.757 17 N -0.601 5.601 18 N -0.603 5.603 19 H 0.082 0.918 20 H 0.079 0.921 21 H 0.122 0.878 22 H 0.125 0.875 23 H 0.098 0.902 24 H 0.287 0.713 25 H 0.120 0.880 26 H 0.399 0.601 27 H 0.329 0.671 28 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 -6.224 3.020 7.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S 0.056 5.944 3 C -0.399 4.399 4 C -0.083 4.083 5 C -0.290 4.290 6 C 0.104 3.896 7 C -0.521 4.521 8 H 0.095 0.905 9 C -0.180 4.180 10 N -0.431 5.431 11 Si 0.801 3.199 12 H -0.182 1.182 13 H -0.189 1.189 14 H -0.192 1.192 15 C -0.269 4.269 16 C 0.137 3.863 17 N -0.328 5.328 18 N -0.229 5.229 19 H 0.101 0.899 20 H 0.098 0.902 21 H 0.140 0.860 22 H 0.143 0.857 23 H 0.116 0.884 24 H 0.098 0.902 25 H 0.138 0.862 26 H 0.238 0.762 27 H 0.143 0.857 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.366 -6.847 2.170 7.192 hybrid contribution -0.335 1.063 0.903 1.435 sum -0.701 -5.784 3.073 6.587 Atomic orbital electron populations 1.23500 0.92714 1.07378 1.05445 1.84283 1.09755 1.04337 1.96041 1.20578 0.93836 0.95439 1.30021 1.20416 0.96662 0.92839 0.98425 1.20725 0.96042 0.94733 1.17455 1.17847 0.91374 0.93894 0.86506 1.19782 1.02419 0.92686 1.37198 0.90547 1.26754 0.95274 1.03997 0.91960 1.70005 1.11804 1.39536 1.21788 0.85190 0.78926 0.76639 0.79113 1.18206 1.18879 1.19198 1.20656 0.99774 0.89745 1.16740 1.17229 0.84873 0.89530 0.94661 1.43084 0.98961 1.05676 1.85090 1.59986 0.92288 1.20936 1.49642 0.89915 0.90207 0.85985 0.85711 0.88416 0.90226 0.86241 0.76201 0.85689 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 8.97 113.37 1.02 -2.18 15 2 S -0.18 -6.24 21.23 -56.49 -1.20 -7.44 15 3 C -0.28 -12.70 6.17 23.10 0.14 -12.56 15 4 C -0.06 -2.73 9.10 22.12 0.20 -2.53 15 5 C -0.27 -13.50 9.72 22.49 0.22 -13.28 15 6 C 0.11 6.00 5.57 -21.28 -0.12 5.88 15 7 C -0.49 -26.86 9.02 23.34 0.21 -26.65 15 8 H 0.08 4.02 7.91 -2.91 -0.02 4.00 15 9 C 0.04 1.87 5.13 85.20 0.44 2.31 15 10 N -0.81 -42.83 10.97 21.80 0.24 -42.59 15 11 Si 0.98 38.32 29.60 68.60 2.03 40.35 15 12 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 13 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 14 H -0.27 -10.03 7.11 99.48 0.71 -9.32 15 15 C -0.24 -13.15 7.98 22.80 0.18 -12.97 15 16 C 0.24 11.77 6.70 38.28 0.26 12.03 15 17 N -0.60 -24.33 6.60 -51.03 -0.34 -24.67 15 18 N -0.60 -21.67 9.59 37.02 0.36 -21.32 15 19 H 0.08 2.11 7.53 -2.39 -0.02 2.09 15 20 H 0.08 2.10 7.52 -2.39 -0.02 2.08 15 21 H 0.12 2.40 8.14 -2.39 -0.02 2.39 15 22 H 0.13 4.67 5.44 -2.91 -0.02 4.65 15 23 H 0.10 4.64 8.06 -2.91 -0.02 4.62 15 24 H 0.29 13.80 8.30 -92.71 -0.77 13.03 15 25 H 0.12 6.65 5.13 -2.91 -0.01 6.63 15 26 H 0.40 14.47 7.37 -215.51 -1.59 12.88 15 27 H 0.33 11.83 8.43 -210.55 -1.78 10.06 15 28 H 0.36 9.70 9.21 -210.56 -1.94 7.76 15 Total: -1.00 -62.65 250.71 -0.45 -63.10 By element: Atomic # 1 Polarization: 46.59 SS G_CDS: -4.08 Total: 42.50 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 2.55 Total: -49.95 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: 0.26 Total: -88.58 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Atomic # 16 Polarization: -6.24 SS G_CDS: -1.20 Total: -7.44 kcal Total: -62.65 -0.45 -63.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307082030.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.114 kcal (2) G-P(sol) polarization free energy of solvation -62.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds