Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 C 1.50703 * 109.47066 * 120.00167 * 2 1 3 5 5 C 1.38679 * 119.79129 * 300.00316 * 4 2 1 6 6 C 1.38553 * 120.52234 * 180.02562 * 5 4 2 7 7 C 1.37854 * 120.10573 * 359.97438 * 6 5 4 8 8 Cl 1.73593 * 120.20903 * 179.97438 * 7 6 5 9 9 C 1.40860 * 119.58288 * 359.97438 * 7 6 5 10 10 C 1.41336 * 120.25600 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00189 * 334.52712 * 10 9 7 12 12 C 1.39949 * 119.99923 * 154.80269 * 10 9 7 13 13 N 1.30834 * 119.99965 * 342.84828 * 12 10 9 14 14 Si 1.86800 * 119.99761 * 162.85210 * 12 10 9 15 15 H 1.48496 * 109.47244 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47469 * 120.00283 * 14 12 10 17 17 H 1.48502 * 109.46915 * 239.99864 * 14 12 10 18 18 C 1.36575 * 119.78925 * 120.30254 * 4 2 1 19 19 H 1.09002 * 109.46806 * 299.99678 * 1 2 3 20 20 H 1.08999 * 109.46717 * 59.99831 * 1 2 3 21 21 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46495 * 239.99873 * 2 1 3 23 23 H 1.08995 * 109.47089 * 299.99853 * 3 2 1 24 24 H 1.09002 * 109.47097 * 60.00500 * 3 2 1 25 25 H 1.09000 * 109.46399 * 179.97438 * 3 2 1 26 26 H 1.08005 * 119.74067 * 359.97438 * 5 4 2 27 27 H 1.08001 * 119.94714 * 179.97438 * 6 5 4 28 28 H 0.96999 * 119.99686 * 185.02801 * 13 12 10 29 29 H 1.07997 * 120.05951 * 359.97438 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6947 -0.2330 2.4879 6 6 2.1486 -0.8740 3.6293 7 6 2.9422 -1.9962 3.5228 8 17 3.5129 -2.8011 4.9511 9 6 3.2870 -2.4856 2.2478 10 6 4.0994 -3.6354 2.1221 11 1 4.7821 -3.9035 2.9149 12 6 4.0233 -4.4231 0.9679 13 7 2.9957 -4.3110 0.1659 14 14 5.3890 -5.6347 0.5724 15 1 6.4299 -5.5696 1.6295 16 1 4.8295 -7.0089 0.5120 17 1 5.9936 -5.2883 -0.7390 18 6 2.8224 -1.8169 1.1001 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9563 0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.0736 0.6460 2.5782 27 1 1.8802 -0.4939 4.6039 28 1 2.9064 -4.9070 -0.5941 29 1 3.0855 -2.1811 0.1181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694821576.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = -17.146359 kcal Electronic energy + Delta-G solvation = -13114.379683 eV Core-core repulsion = 10833.847319 eV Total energy + Delta-G solvation = -2280.532364 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.16208 -35.39022 -34.47172 -33.25325 -29.68493 -28.51724 -26.62312 -25.28033 -21.93722 -21.20322 -19.08653 -16.96109 -15.70175 -14.91026 -14.52855 -13.95202 -13.17559 -13.02892 -12.86782 -12.51955 -11.99842 -11.73352 -11.45155 -11.39691 -11.15693 -10.83572 -10.71330 -10.64240 -10.35916 -9.95264 -9.85984 -9.50376 -9.25076 -9.20470 -7.50902 -7.22797 -6.81537 -4.42821 2.65511 2.84868 3.05362 3.11567 3.15859 3.75909 3.89483 4.52478 5.43818 5.50117 5.52237 5.86338 6.06552 6.11579 6.23002 6.29876 6.37285 6.45424 6.59124 6.73479 6.80157 6.97478 7.15903 7.21742 7.43184 7.64708 7.86172 8.01405 8.16292 8.50661 8.75836 8.81143 10.10515 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.011623 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.394206 B = 2408.352130 C = 3443.472974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.138 4.138 4 C -0.061 4.061 5 C -0.228 4.228 6 C -0.081 4.081 7 C -0.143 4.143 8 Cl -0.123 7.123 9 C 0.118 3.882 10 C -0.448 4.448 11 H 0.088 0.912 12 C 0.076 3.924 13 N -0.789 5.789 14 Si 0.909 3.091 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.271 1.271 18 C -0.149 4.149 19 H 0.052 0.948 20 H 0.044 0.956 21 H 0.054 0.946 22 H 0.067 0.933 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.282 0.718 29 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 4.197 -1.096 4.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.195 4.195 4 C -0.062 4.062 5 C -0.247 4.247 6 C -0.100 4.100 7 C -0.170 4.170 8 Cl -0.095 7.095 9 C 0.115 3.885 10 C -0.477 4.477 11 H 0.106 0.894 12 C -0.143 4.143 13 N -0.414 5.414 14 Si 0.734 3.266 15 H -0.182 1.182 16 H -0.199 1.199 17 H -0.197 1.197 18 C -0.168 4.168 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.093 0.907 29 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.124 4.057 -1.226 4.385 hybrid contribution 0.512 -0.736 -0.038 0.897 sum -0.612 3.321 -1.264 3.606 Atomic orbital electron populations 1.21780 0.95493 1.01638 1.00487 1.20021 0.95100 0.95199 0.96733 1.21804 1.00981 0.96074 1.00636 1.19196 0.98007 0.95874 0.93085 1.20052 1.09750 1.03319 0.91619 1.20379 0.97678 0.94705 0.97249 1.20788 1.09562 1.00632 0.86049 1.98194 1.89268 1.81134 1.40924 1.17414 0.90317 0.91953 0.88847 1.19716 1.19287 1.07060 1.01628 0.89418 1.25960 0.95825 0.97897 0.94590 1.69804 1.25609 1.33087 1.12851 0.86228 0.81547 0.79504 0.79357 1.18203 1.19871 1.19655 1.20929 1.02027 0.95089 0.98781 0.92914 0.93717 0.92668 0.91408 0.93661 0.92826 0.92921 0.88820 0.88565 0.90746 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.01 37.16 0.33 -1.88 15 2 C -0.05 -0.95 3.08 -91.77 -0.28 -1.23 15 3 C -0.14 -2.15 9.01 37.16 0.33 -1.82 15 4 C -0.06 -1.35 4.74 -105.06 -0.50 -1.85 15 5 C -0.23 -4.91 8.71 -39.30 -0.34 -5.25 15 6 C -0.08 -1.83 9.82 -39.61 -0.39 -2.22 15 7 C -0.14 -3.52 6.38 -38.73 -0.25 -3.76 15 8 Cl -0.12 -2.77 27.61 -51.86 -1.43 -4.20 15 9 C 0.12 3.10 5.57 -106.79 -0.59 2.50 15 10 C -0.45 -11.74 8.52 -37.76 -0.32 -12.06 15 11 H 0.09 2.28 7.13 -52.49 -0.37 1.90 15 12 C 0.08 1.87 5.15 -17.34 -0.09 1.78 15 13 N -0.79 -19.83 10.98 55.55 0.61 -19.22 15 14 Si 0.91 18.54 29.60 -169.99 -5.03 13.51 15 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 15 16 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 17 H -0.27 -5.42 7.11 56.52 0.40 -5.01 15 18 C -0.15 -3.72 8.25 -39.24 -0.32 -4.05 15 19 H 0.05 0.83 7.37 -51.93 -0.38 0.44 15 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.26 7.84 -51.93 -0.41 0.85 15 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 24 H 0.05 0.82 7.37 -51.93 -0.38 0.43 15 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 26 H 0.09 1.80 7.06 -52.48 -0.37 1.43 15 27 H 0.10 1.95 8.06 -52.49 -0.42 1.53 15 28 H 0.28 6.42 8.30 -40.82 -0.34 6.08 15 29 H 0.12 3.18 6.06 -52.49 -0.32 2.86 15 LS Contribution 259.49 15.07 3.91 3.91 Total: -1.00 -26.11 259.49 -7.85 -33.96 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.48 Total: 1.88 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: -2.42 Total: -29.85 kcal Atomic # 7 Polarization: -19.83 SS G_CDS: 0.61 Total: -19.22 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -1.43 Total: -4.20 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -26.11 -7.85 -33.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694821576.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.811 kcal (2) G-P(sol) polarization free energy of solvation -26.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds