Wall clock time and date at job start Mon Mar 30 2020 03:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.46962 * 2 1 4 4 C 1.50703 * 109.47066 * 120.00167 * 2 1 3 5 5 C 1.38679 * 119.79129 * 300.00316 * 4 2 1 6 6 C 1.38553 * 120.52234 * 180.02562 * 5 4 2 7 7 C 1.37854 * 120.10573 * 359.97438 * 6 5 4 8 8 Cl 1.73593 * 120.20903 * 179.97438 * 7 6 5 9 9 C 1.40860 * 119.58288 * 359.97438 * 7 6 5 10 10 C 1.41336 * 120.25600 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00189 * 334.52712 * 10 9 7 12 12 C 1.39949 * 119.99923 * 154.80269 * 10 9 7 13 13 N 1.30834 * 119.99965 * 342.84828 * 12 10 9 14 14 Si 1.86800 * 119.99761 * 162.85210 * 12 10 9 15 15 H 1.48496 * 109.47244 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47469 * 120.00283 * 14 12 10 17 17 H 1.48502 * 109.46915 * 239.99864 * 14 12 10 18 18 C 1.36575 * 119.78925 * 120.30254 * 4 2 1 19 19 H 1.09002 * 109.46806 * 299.99678 * 1 2 3 20 20 H 1.08999 * 109.46717 * 59.99831 * 1 2 3 21 21 H 1.08995 * 109.47137 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46495 * 239.99873 * 2 1 3 23 23 H 1.08995 * 109.47089 * 299.99853 * 3 2 1 24 24 H 1.09002 * 109.47097 * 60.00500 * 3 2 1 25 25 H 1.09000 * 109.46399 * 179.97438 * 3 2 1 26 26 H 1.08005 * 119.74067 * 359.97438 * 5 4 2 27 27 H 1.08001 * 119.94714 * 179.97438 * 6 5 4 28 28 H 0.96999 * 119.99686 * 185.02801 * 13 12 10 29 29 H 1.07997 * 120.05951 * 359.97438 * 18 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 1.6947 -0.2330 2.4879 6 6 2.1486 -0.8740 3.6293 7 6 2.9422 -1.9962 3.5228 8 17 3.5129 -2.8011 4.9511 9 6 3.2870 -2.4856 2.2478 10 6 4.0994 -3.6354 2.1221 11 1 4.7821 -3.9035 2.9149 12 6 4.0233 -4.4231 0.9679 13 7 2.9957 -4.3110 0.1659 14 14 5.3890 -5.6347 0.5724 15 1 6.4299 -5.5696 1.6295 16 1 4.8295 -7.0089 0.5120 17 1 5.9936 -5.2883 -0.7390 18 6 2.8224 -1.8169 1.1001 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 1.6767 1.9563 -0.8900 24 1 1.6768 1.9563 0.8900 25 1 3.1301 1.4424 0.0005 26 1 1.0736 0.6460 2.5782 27 1 1.8802 -0.4939 4.6039 28 1 2.9064 -4.9070 -0.5941 29 1 3.0855 -2.1811 0.1181 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694821576.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:35 Heat of formation + Delta-G solvation = -28.859731 kcal Electronic energy + Delta-G solvation = -13114.887613 eV Core-core repulsion = 10833.847319 eV Total energy + Delta-G solvation = -2281.040293 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.066 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.90607 -37.10680 -36.21264 -34.97651 -31.53167 -30.22967 -27.87797 -27.14604 -23.54355 -23.02561 -20.75376 -18.78499 -17.48395 -16.65926 -16.14501 -15.61231 -14.78145 -14.60049 -14.33782 -14.25982 -13.66345 -13.18011 -13.01703 -12.94217 -12.84250 -12.59604 -12.30062 -12.12561 -11.99252 -11.55834 -11.49715 -11.18174 -11.05945 -10.99366 -9.37137 -9.03200 -8.64168 -6.36146 0.87433 1.02972 1.37514 1.49007 1.52250 1.91850 2.19602 2.69750 3.60901 4.06757 4.14151 4.45825 4.48553 4.72185 4.80979 4.89601 5.02418 5.05735 5.10896 5.18684 5.24248 5.37658 5.50507 5.51638 5.62261 5.84116 5.99829 6.20114 6.31550 6.62710 6.86753 6.93337 8.29913 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.021744 B = 0.011623 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.394206 B = 2408.352130 C = 3443.472974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 C -0.131 4.131 4 C -0.059 4.059 5 C -0.221 4.221 6 C -0.086 4.086 7 C -0.165 4.165 8 Cl -0.113 7.113 9 C 0.088 3.912 10 C -0.483 4.483 11 H 0.079 0.921 12 C 0.038 3.962 13 N -0.818 5.818 14 Si 0.977 3.023 15 H -0.261 1.261 16 H -0.264 1.264 17 H -0.262 1.262 18 C -0.176 4.176 19 H 0.061 0.939 20 H 0.074 0.926 21 H 0.035 0.965 22 H 0.056 0.944 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.041 0.959 26 H 0.126 0.874 27 H 0.121 0.879 28 H 0.289 0.711 29 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 5.322 -1.420 5.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.073 4.073 3 C -0.188 4.188 4 C -0.060 4.060 5 C -0.240 4.240 6 C -0.105 4.105 7 C -0.193 4.193 8 Cl -0.085 7.085 9 C 0.085 3.915 10 C -0.512 4.512 11 H 0.097 0.903 12 C -0.178 4.178 13 N -0.443 5.443 14 Si 0.798 3.202 15 H -0.185 1.185 16 H -0.189 1.189 17 H -0.187 1.187 18 C -0.195 4.195 19 H 0.080 0.920 20 H 0.093 0.907 21 H 0.055 0.945 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.144 0.856 27 H 0.139 0.861 28 H 0.100 0.900 29 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.688 5.195 -1.543 5.676 hybrid contribution 0.608 -0.991 0.104 1.168 sum -1.080 4.204 -1.439 4.573 Atomic orbital electron populations 1.21737 0.93621 1.01044 1.02432 1.20099 0.96589 0.96358 0.94302 1.21751 1.00362 0.94241 1.02488 1.19638 0.96319 0.94806 0.95206 1.20443 1.08914 1.03690 0.90934 1.20740 0.96863 0.94015 0.98884 1.21048 1.10385 1.01632 0.86222 1.98179 1.89248 1.81113 1.39910 1.17775 0.91094 0.92577 0.90035 1.19847 1.20375 1.08241 1.02693 0.90304 1.26713 0.97695 0.99410 0.93939 1.69847 1.26940 1.34128 1.13384 0.85221 0.78390 0.77438 0.79122 1.18472 1.18906 1.18700 1.20917 1.04072 0.96743 0.97801 0.92024 0.90725 0.94544 0.92553 0.90778 0.92001 0.93931 0.85633 0.86138 0.90005 0.87677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.01 71.99 0.65 -3.26 15 2 C -0.05 -1.91 3.08 -11.54 -0.04 -1.94 15 3 C -0.13 -3.72 9.01 71.98 0.65 -3.07 15 4 C -0.06 -2.58 4.74 -20.15 -0.10 -2.67 15 5 C -0.22 -9.06 8.71 22.45 0.20 -8.86 15 6 C -0.09 -3.78 9.82 22.25 0.22 -3.56 15 7 C -0.17 -8.18 6.38 22.82 0.15 -8.03 15 8 Cl -0.11 -5.06 27.61 -2.72 -0.08 -5.13 15 9 C 0.09 4.75 5.57 -21.27 -0.12 4.63 15 10 C -0.48 -26.08 8.52 23.45 0.20 -25.88 15 11 H 0.08 4.24 7.13 -2.91 -0.02 4.22 15 12 C 0.04 1.92 5.15 85.26 0.44 2.36 15 13 N -0.82 -42.12 10.98 21.83 0.24 -41.88 15 14 Si 0.98 38.50 29.60 68.60 2.03 40.53 15 15 H -0.26 -10.26 7.11 99.48 0.71 -9.56 15 16 H -0.26 -9.94 7.11 99.48 0.71 -9.24 15 17 H -0.26 -9.86 7.11 99.48 0.71 -9.15 15 18 C -0.18 -9.00 8.25 22.49 0.19 -8.81 15 19 H 0.06 1.72 7.37 -2.39 -0.02 1.70 15 20 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 21 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 22 H 0.06 2.07 7.84 -2.39 -0.02 2.05 15 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.06 1.65 7.37 -2.39 -0.02 1.63 15 25 H 0.04 1.27 8.14 -2.39 -0.02 1.26 15 26 H 0.13 4.33 7.06 -2.91 -0.02 4.31 15 27 H 0.12 4.60 8.06 -2.91 -0.02 4.58 15 28 H 0.29 13.42 8.30 -92.71 -0.77 12.65 15 29 H 0.11 5.66 6.06 -2.91 -0.02 5.65 15 Total: -1.00 -56.65 259.49 5.76 -50.89 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.14 Total: 14.69 kcal Atomic # 6 Polarization: -61.53 SS G_CDS: 2.43 Total: -59.10 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.24 Total: -41.88 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Atomic # 17 Polarization: -5.06 SS G_CDS: -0.08 Total: -5.13 kcal Total: -56.65 5.76 -50.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694821576.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.027 kcal (2) G-P(sol) polarization free energy of solvation -56.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds