Wall clock time and date at job start Mon Mar 30 2020 03:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47350 * 239.99782 * 2 1 3 5 5 C 1.50707 * 109.47180 * 174.99791 * 4 2 1 6 6 H 1.07995 * 120.00006 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00023 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99986 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00151 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46867 * 60.00042 * 9 7 5 11 11 H 1.48503 * 109.47227 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47276 * 300.00113 * 9 7 5 13 13 S 1.81399 * 109.47143 * 119.99997 * 2 1 3 14 14 C 1.76197 * 103.00045 * 295.00246 * 13 2 1 15 15 C 1.39546 * 120.16130 * 179.97438 * 14 13 2 16 16 C 1.38534 * 117.89819 * 180.02562 * 15 14 13 17 17 C 1.38843 * 118.04937 * 0.02562 * 16 15 14 18 18 N 1.31794 * 120.02556 * 359.97438 * 17 16 15 19 19 N 1.28350 * 122.28992 * 359.75306 * 18 17 16 20 20 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47474 * 299.99800 * 1 2 3 22 22 H 1.09002 * 109.46922 * 60.00398 * 1 2 3 23 23 H 1.08998 * 109.47339 * 295.00204 * 4 2 1 24 24 H 1.09006 * 109.46721 * 55.00122 * 4 2 1 25 25 H 0.97001 * 119.99981 * 179.97438 * 8 7 5 26 26 H 1.08001 * 121.05217 * 359.97438 * 15 14 13 27 27 H 1.08000 * 120.97513 * 180.02562 * 16 15 14 28 28 H 1.08000 * 119.98864 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5420 -0.6149 -1.3126 6 1 4.0790 -0.0861 -0.5392 7 6 4.2304 -1.1926 -2.3582 8 7 3.5764 -1.8361 -3.3005 9 14 6.0921 -1.0613 -2.4365 10 1 6.6838 -1.6884 -1.2273 11 1 6.5870 -1.7603 -3.6497 12 1 6.4855 0.3694 -2.4950 13 16 2.1346 -0.8551 1.4811 14 6 1.5826 0.1846 2.7922 15 6 1.8625 -0.1501 4.1177 16 6 1.4058 0.7004 5.1113 17 6 0.6980 1.8316 4.7279 18 7 0.4787 2.0709 3.4506 19 7 0.9030 1.2905 2.5241 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.7517 -1.7715 -1.2055 24 1 1.6054 -0.2617 -2.1369 25 1 4.0607 -2.2423 -4.0363 26 1 2.4170 -1.0443 4.3613 27 1 1.5947 0.4896 6.1535 28 1 0.3271 2.5158 5.4767 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712434027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:11 Heat of formation + Delta-G solvation = 41.229314 kcal Electronic energy + Delta-G solvation = -12674.738758 eV Core-core repulsion = 10431.074211 eV Total energy + Delta-G solvation = -2243.664547 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.59677 -34.60372 -33.04874 -32.46071 -31.88853 -27.46938 -24.51704 -24.44790 -23.30262 -20.56752 -17.83251 -17.10960 -16.49886 -16.36426 -15.10445 -14.75619 -14.55557 -13.91195 -13.24252 -12.78887 -12.59849 -11.83302 -11.74236 -11.39806 -10.91842 -10.82170 -10.60058 -10.41158 -10.30408 -10.15914 -9.83352 -9.46044 -9.30361 -9.16962 -8.40140 -7.18864 -6.05337 -4.07838 0.89748 0.96401 1.89588 2.91725 3.33127 3.36960 3.40281 3.62984 4.43403 4.45411 4.68469 4.74899 4.86709 5.12127 5.31853 5.73090 5.75509 5.88003 5.96275 6.14048 6.17919 6.55484 6.62989 6.78688 7.49822 7.55506 7.91357 8.28147 8.80537 8.96652 9.56467 11.05694 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.043228 B = 0.007026 C = 0.006483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.578659 B = 3984.477809 C = 4317.621239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.056 4.056 3 H 0.089 0.911 4 C 0.037 3.963 5 C -0.523 4.523 6 H 0.062 0.938 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 S -0.016 6.016 14 C 0.054 3.946 15 C -0.110 4.110 16 C -0.106 4.106 17 C 0.011 3.989 18 N -0.235 5.235 19 N -0.252 5.252 20 H 0.054 0.946 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.027 0.973 24 H 0.040 0.960 25 H 0.262 0.738 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 2.716 14.735 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 H 0.108 0.892 4 C -0.002 4.002 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 S 0.225 5.775 14 C -0.200 4.200 15 C -0.145 4.145 16 C -0.136 4.136 17 C -0.159 4.159 18 N -0.077 5.077 19 N -0.100 5.100 20 H 0.073 0.927 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.168 0.832 27 H 0.166 0.834 28 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.290 2.553 13.330 14.234 hybrid contribution 1.024 0.268 1.022 1.471 sum -3.266 2.821 14.351 14.986 Atomic orbital electron populations 1.22092 0.94327 1.01766 1.02301 1.23672 0.97337 1.02538 0.94898 0.89229 1.19098 0.96461 0.95626 0.88996 1.21212 0.91518 1.34949 1.08490 0.91995 1.24984 0.98538 0.95076 0.95515 1.69947 1.35778 1.35618 1.11948 0.86634 0.85553 0.78326 0.77436 1.20048 1.21302 1.20180 1.86065 1.66226 1.29261 0.95937 1.25542 0.96957 0.98297 0.99165 1.21992 0.99875 1.01081 0.91570 1.22248 0.96092 0.94428 1.00879 1.24091 0.98536 0.97448 0.95780 1.72768 1.13436 1.22040 0.99409 1.73650 1.09214 1.01496 1.25672 0.92686 0.92026 0.91945 0.95504 0.94246 0.92806 0.83191 0.83411 0.81644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.03 37.16 0.34 -2.36 15 2 C -0.06 -1.18 2.29 -26.73 -0.06 -1.24 15 3 H 0.09 1.98 8.14 -51.92 -0.42 1.56 15 4 C 0.04 0.92 4.45 -27.88 -0.12 0.80 15 5 C -0.52 -14.39 8.53 -34.44 -0.29 -14.68 15 6 H 0.06 1.68 7.60 -52.49 -0.40 1.28 15 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 8 N -0.89 -26.31 13.29 55.43 0.74 -25.58 15 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 15 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 15 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 13 S -0.02 -0.32 20.66 -107.50 -2.22 -2.54 15 14 C 0.05 0.93 6.92 -16.75 -0.12 0.81 15 15 C -0.11 -1.45 9.97 -38.98 -0.39 -1.84 15 16 C -0.11 -1.12 10.20 -39.25 -0.40 -1.52 15 17 C 0.01 0.14 11.31 -17.34 -0.20 -0.06 15 18 N -0.23 -3.83 11.49 30.57 0.35 -3.48 15 19 N -0.25 -4.60 8.67 31.49 0.27 -4.33 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.55 15 21 H 0.06 1.12 5.99 -51.93 -0.31 0.81 15 22 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.04 1.05 8.14 -51.93 -0.42 0.62 15 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 15 26 H 0.15 1.61 8.06 -52.49 -0.42 1.19 15 27 H 0.15 0.94 8.06 -52.49 -0.42 0.51 15 28 H 0.17 1.32 8.06 -52.49 -0.42 0.90 15 LS Contribution 259.90 15.07 3.92 3.92 Total: -1.00 -30.83 259.90 -6.53 -37.36 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -3.23 Total: -3.37 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -1.34 Total: -18.48 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 1.36 Total: -33.39 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -2.22 Total: -2.54 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.83 -6.53 -37.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712434027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.593 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds