Wall clock time and date at job start Mon Mar 30 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48500 * 109.47072 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46768 * 120.00280 * 3 2 1 7 7 C 1.38944 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00373 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00110 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99862 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00269 * 179.97438 * 10 9 7 13 13 C 1.50696 * 109.47366 * 179.97438 * 12 10 9 14 14 C 1.38752 * 120.77250 * 269.97684 * 13 12 10 15 15 C 1.38108 * 119.21991 * 180.02562 * 14 13 12 16 16 N 1.31925 * 120.80242 * 0.02562 * 15 14 13 17 17 C 1.32038 * 121.68882 * 359.68313 * 16 15 14 18 18 F 1.35096 * 119.64981 * 180.28646 * 17 16 15 19 19 C 1.38507 * 120.77580 * 90.00130 * 13 12 10 20 20 H 0.96995 * 120.00283 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00493 * 359.97438 * 9 7 2 22 22 H 1.08999 * 109.46813 * 59.99685 * 12 10 9 23 23 H 1.09004 * 109.46895 * 299.99906 * 12 10 9 24 24 H 1.07995 * 120.38911 * 359.97438 * 14 13 12 25 25 H 1.08003 * 119.59612 * 179.97438 * 15 14 13 26 26 H 1.08002 * 120.42704 * 359.94978 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 6 2.2232 -6.0083 0.0004 14 6 2.6832 -6.5482 -1.1922 15 6 3.5800 -7.5979 -1.1554 16 7 3.9993 -8.0882 -0.0047 17 6 3.5881 -7.5968 1.1497 18 9 4.0488 -8.1268 2.3038 19 6 2.6846 -6.5470 1.1900 20 1 -0.4850 0.8400 0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6169 -4.9208 -0.8886 23 1 0.6176 -4.9205 0.8914 24 1 2.3433 -6.1528 -2.1379 25 1 3.9417 -8.0230 -2.0800 26 1 2.3479 -6.1511 2.1367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001632144972.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:53 Heat of formation + Delta-G solvation = -51.068991 kcal Electronic energy + Delta-G solvation = -14357.422430 eV Core-core repulsion = 11543.542353 eV Total energy + Delta-G solvation = -2813.880078 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.83803 -40.01775 -38.14844 -34.27296 -33.42367 -31.34585 -30.71078 -28.46154 -24.89126 -23.51512 -22.27427 -19.44191 -18.07451 -17.16411 -17.13176 -16.13716 -15.91878 -15.75324 -14.61818 -14.50334 -14.14004 -13.87254 -13.34870 -13.05072 -12.62961 -12.36662 -12.10156 -11.59637 -11.44833 -11.06424 -10.50483 -10.30616 -9.63398 -9.60575 -9.57532 -8.84809 -8.52590 -8.08238 -6.51138 -3.92695 1.10205 1.27460 3.14040 3.21124 3.25382 3.65968 3.75419 3.79190 4.11610 4.55151 4.77143 5.01234 5.08845 5.15551 5.18918 5.60094 5.62418 5.82659 5.86543 5.93618 6.25000 6.44716 6.77795 7.46483 7.76001 7.94098 8.48223 9.06915 9.41324 9.91672 10.66020 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.053106 B = 0.005684 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.121516 B = 4925.019682 C = 5013.931506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.304 4.304 8 H 0.103 0.897 9 N -0.556 5.556 10 C 0.440 3.560 11 O -0.590 6.590 12 C -0.103 4.103 13 C 0.029 3.971 14 C -0.170 4.170 15 C 0.131 3.869 16 N -0.524 5.524 17 C 0.302 3.698 18 F -0.118 7.118 19 C -0.181 4.181 20 H 0.274 0.726 21 H 0.394 0.606 22 H 0.097 0.903 23 H 0.096 0.904 24 H 0.142 0.858 25 H 0.165 0.835 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 -10.425 -1.146 10.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.121 0.879 9 N -0.192 5.192 10 C 0.226 3.774 11 O -0.475 6.475 12 C -0.143 4.143 13 C 0.021 3.979 14 C -0.190 4.190 15 C -0.025 4.025 16 N -0.239 5.239 17 C 0.149 3.851 18 F -0.097 7.097 19 C -0.202 4.202 20 H 0.084 0.916 21 H 0.227 0.773 22 H 0.116 0.884 23 H 0.114 0.886 24 H 0.159 0.841 25 H 0.182 0.818 26 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.630 -10.950 -1.081 11.022 hybrid contribution -0.670 1.493 0.253 1.656 sum -0.040 -9.457 -0.827 9.493 Atomic orbital electron populations 1.69595 1.05965 1.28503 1.49902 1.25281 0.95647 0.99816 0.96962 0.85903 0.78802 0.80284 0.79182 1.19806 1.20870 1.19810 1.19677 0.93409 0.82144 1.48079 0.87883 1.41853 1.09284 1.04507 1.63553 1.19550 0.88176 0.84372 0.85324 1.90568 1.13727 1.87124 1.56091 1.20675 0.97005 0.91900 1.04736 1.19708 0.93611 0.92596 0.92020 1.22052 0.99693 0.98067 0.99220 1.22378 0.92931 0.92913 0.94255 1.66930 1.27068 1.31930 0.97992 1.18049 0.93492 0.91898 0.81703 1.91589 1.87599 1.85789 1.44772 1.21663 1.00149 0.97692 1.00684 0.91645 0.77255 0.88436 0.88595 0.84063 0.81833 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.69 13.05 55.50 0.72 -22.96 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 15 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 15 4 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 7 C -0.30 -8.22 9.68 -14.94 -0.14 -8.37 15 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 15 9 N -0.56 -13.47 5.29 -10.96 -0.06 -13.53 15 10 C 0.44 9.84 7.78 -10.98 -0.09 9.75 15 11 O -0.59 -15.54 15.61 5.54 0.09 -15.46 15 12 C -0.10 -1.63 5.88 -29.04 -0.17 -1.80 15 13 C 0.03 0.46 4.41 -104.33 -0.46 0.00 15 14 C -0.17 -2.40 9.81 -39.44 -0.39 -2.78 15 15 C 0.13 1.78 11.18 -17.56 -0.20 1.58 15 16 N -0.52 -8.43 10.37 -13.59 -0.14 -8.57 15 17 C 0.30 4.93 8.41 -17.34 -0.15 4.78 15 18 F -0.12 -1.89 17.29 2.25 0.04 -1.85 15 19 C -0.18 -2.85 9.79 -39.36 -0.39 -3.23 15 20 H 0.27 6.84 8.31 -40.82 -0.34 6.50 15 21 H 0.39 9.00 7.90 -40.82 -0.32 8.67 15 22 H 0.10 1.29 8.10 -51.93 -0.42 0.87 15 23 H 0.10 1.31 8.10 -51.93 -0.42 0.89 15 24 H 0.14 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.16 1.59 8.06 -52.48 -0.42 1.17 15 26 H 0.14 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 248.66 15.07 3.75 3.75 Total: -1.00 -31.31 248.66 -4.64 -35.95 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -1.94 Total: 6.66 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -2.07 Total: 0.49 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.53 Total: -45.06 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.31 -4.64 -35.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632144972.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.120 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds