Wall clock time and date at job start Mon Mar 30 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48500 * 109.47072 * 239.99746 * 3 2 1 5 5 H 1.48499 * 109.46948 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46768 * 120.00280 * 3 2 1 7 7 C 1.38944 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00373 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00110 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99862 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00269 * 179.97438 * 10 9 7 13 13 C 1.50696 * 109.47366 * 179.97438 * 12 10 9 14 14 C 1.38752 * 120.77250 * 269.97684 * 13 12 10 15 15 C 1.38108 * 119.21991 * 180.02562 * 14 13 12 16 16 N 1.31925 * 120.80242 * 0.02562 * 15 14 13 17 17 C 1.32038 * 121.68882 * 359.68313 * 16 15 14 18 18 F 1.35096 * 119.64981 * 180.28646 * 17 16 15 19 19 C 1.38507 * 120.77580 * 90.00130 * 13 12 10 20 20 H 0.96995 * 120.00283 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00493 * 359.97438 * 9 7 2 22 22 H 1.08999 * 109.46813 * 59.99685 * 12 10 9 23 23 H 1.09004 * 109.46895 * 299.99906 * 12 10 9 24 24 H 1.07995 * 120.38911 * 359.97438 * 14 13 12 25 25 H 1.08003 * 119.59612 * 179.97438 * 15 14 13 26 26 H 1.08002 * 120.42704 * 359.94978 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2830 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 6 2.2232 -6.0083 0.0004 14 6 2.6832 -6.5482 -1.1922 15 6 3.5800 -7.5979 -1.1554 16 7 3.9993 -8.0882 -0.0047 17 6 3.5881 -7.5968 1.1497 18 9 4.0488 -8.1268 2.3038 19 6 2.6846 -6.5470 1.1900 20 1 -0.4850 0.8400 0.0004 21 1 0.3535 -2.3907 0.0005 22 1 0.6169 -4.9208 -0.8886 23 1 0.6176 -4.9205 0.8914 24 1 2.3433 -6.1528 -2.1379 25 1 3.9417 -8.0230 -2.0800 26 1 2.3479 -6.1511 2.1367 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001632144972.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:53 Heat of formation + Delta-G solvation = -72.792349 kcal Electronic energy + Delta-G solvation = -14358.364426 eV Core-core repulsion = 11543.542353 eV Total energy + Delta-G solvation = -2814.822073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.05711 -41.24226 -39.88364 -36.09871 -34.81996 -33.28498 -31.84161 -29.85403 -26.75269 -24.65901 -23.58914 -21.13919 -19.97089 -18.44606 -18.31640 -17.80600 -17.06812 -17.04203 -16.50359 -15.89581 -15.79110 -15.25098 -14.68634 -14.56092 -14.03503 -13.74486 -13.44837 -13.30555 -12.96419 -12.58713 -12.44354 -12.13208 -11.52545 -10.92891 -10.75020 -10.32122 -10.04120 -9.97566 -8.48220 -5.97064 -0.04500 0.09091 1.38959 1.42454 1.52486 2.01902 2.28432 2.51286 2.63523 3.19308 3.26105 3.47573 3.72422 3.95561 4.06877 4.36146 4.46327 4.55985 4.66857 4.82463 4.84895 5.28766 5.40440 5.64438 5.97654 6.56479 6.62717 7.10281 7.53037 8.08067 8.68453 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.053106 B = 0.005684 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.121516 B = 4925.019682 C = 5013.931506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.989 3.011 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.078 0.922 9 N -0.567 5.567 10 C 0.442 3.558 11 O -0.633 6.633 12 C -0.089 4.089 13 C 0.009 3.991 14 C -0.168 4.168 15 C 0.133 3.867 16 N -0.542 5.542 17 C 0.282 3.718 18 F -0.123 7.123 19 C -0.188 4.188 20 H 0.279 0.721 21 H 0.400 0.600 22 H 0.131 0.869 23 H 0.122 0.878 24 H 0.167 0.833 25 H 0.204 0.796 26 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -10.622 -1.986 10.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.096 0.904 9 N -0.204 5.204 10 C 0.230 3.770 11 O -0.521 6.521 12 C -0.128 4.128 13 C 0.001 3.999 14 C -0.188 4.188 15 C -0.023 4.023 16 N -0.257 5.257 17 C 0.130 3.870 18 F -0.102 7.102 19 C -0.210 4.210 20 H 0.088 0.912 21 H 0.234 0.766 22 H 0.149 0.851 23 H 0.140 0.860 24 H 0.184 0.816 25 H 0.220 0.780 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.031 -11.161 -1.914 11.324 hybrid contribution -0.467 1.476 0.479 1.621 sum -0.436 -9.685 -1.435 9.800 Atomic orbital electron populations 1.69646 1.06720 1.29466 1.49876 1.25982 0.96500 1.02272 0.96135 0.85043 0.77841 0.76901 0.78915 1.19682 1.19462 1.19915 1.19614 0.92696 0.84043 1.50210 0.90394 1.41909 1.09493 1.04540 1.64418 1.20619 0.87967 0.85854 0.82593 1.90541 1.16072 1.88122 1.57334 1.20609 0.96759 0.87798 1.07666 1.19860 0.94319 0.93020 0.92720 1.22425 0.99001 0.97695 0.99693 1.23058 0.92066 0.92379 0.94764 1.66991 1.27611 1.32560 0.98582 1.18228 0.94290 0.92596 0.81911 1.91568 1.87721 1.85897 1.45041 1.21812 1.00124 0.97653 1.01372 0.91189 0.76593 0.85072 0.86041 0.81583 0.77967 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.63 13.05 21.66 0.28 -47.35 15 2 C -0.01 -0.44 5.50 84.92 0.47 0.03 15 3 Si 0.99 41.73 29.55 68.60 2.03 43.76 15 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 15 6 H -0.27 -11.52 7.11 99.48 0.71 -10.82 15 7 C -0.34 -18.39 9.68 84.04 0.81 -17.57 15 8 H 0.08 4.58 7.16 -2.91 -0.02 4.56 15 9 N -0.57 -27.34 5.29 -306.98 -1.62 -28.97 15 10 C 0.44 19.42 7.78 87.66 0.68 20.10 15 11 O -0.63 -33.50 15.61 -3.08 -0.05 -33.54 15 12 C -0.09 -2.60 5.88 29.10 0.17 -2.43 15 13 C 0.01 0.27 4.41 -19.68 -0.09 0.18 15 14 C -0.17 -4.29 9.81 22.36 0.22 -4.07 15 15 C 0.13 3.27 11.18 84.65 0.95 4.21 15 16 N -0.54 -16.69 10.37 -196.92 -2.04 -18.73 15 17 C 0.28 9.05 8.41 84.74 0.71 9.77 15 18 F -0.12 -3.93 17.29 44.97 0.78 -3.15 15 19 C -0.19 -5.76 9.79 22.41 0.22 -5.54 15 20 H 0.28 13.62 8.31 -92.71 -0.77 12.85 15 21 H 0.40 18.01 7.90 -92.71 -0.73 17.27 15 22 H 0.13 2.99 8.10 -2.39 -0.02 2.98 15 23 H 0.12 2.97 8.10 -2.39 -0.02 2.95 15 24 H 0.17 3.32 8.06 -2.91 -0.02 3.30 15 25 H 0.20 3.19 8.06 -2.91 -0.02 3.16 15 26 H 0.15 4.22 8.06 -2.91 -0.02 4.20 15 Total: -1.00 -67.52 248.66 4.01 -63.52 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.49 Total: 19.79 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.14 Total: 4.67 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -3.38 Total: -95.05 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.05 Total: -33.54 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -67.52 4.01 -63.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001632144972.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.277 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds