Wall clock time and date at job start Mon Mar 30 2020 03:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31510 * 120.00248 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 119.99357 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46811 * 90.00524 * 8 6 4 10 10 H 1.48502 * 109.46643 * 209.99901 * 8 6 4 11 11 H 1.48499 * 109.47300 * 329.99977 * 8 6 4 12 12 C 1.40165 * 111.00243 * 123.95403 * 2 1 3 13 13 C 1.38781 * 120.00780 * 295.77468 * 12 2 1 14 14 C 1.38145 * 120.02438 * 179.74290 * 13 12 2 15 15 C 1.38855 * 120.03320 * 0.50902 * 14 13 12 16 16 N 1.39993 * 119.99556 * 179.74548 * 15 14 13 17 17 C 1.38862 * 120.01456 * 359.76604 * 15 14 13 18 18 C 1.38260 * 119.97229 * 359.97438 * 17 15 14 19 19 F 1.35104 * 120.01299 * 179.97438 * 18 17 15 20 20 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 21 21 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 22 22 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 24 24 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 25 25 H 0.96999 * 119.99895 * 180.02562 * 7 6 4 26 26 H 1.07998 * 119.98818 * 359.97438 * 13 12 2 27 27 H 1.07994 * 119.98535 * 180.23119 * 14 13 12 28 28 H 0.96994 * 120.00237 * 180.02562 * 16 15 14 29 29 H 0.97001 * 119.99712 * 0.02562 * 16 15 14 30 30 H 1.07991 * 120.01288 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 1.7142 3.9391 -2.6618 8 14 3.0007 4.2759 -0.2313 9 1 4.4531 4.0625 -0.4557 10 1 2.6934 5.7258 -0.3237 11 1 2.6293 3.7760 1.1168 12 6 1.9714 -0.7308 1.0854 13 6 1.7323 -0.2997 2.3827 14 6 2.2227 -1.0226 3.4528 15 6 2.9643 -2.1755 3.2313 16 7 3.4654 -2.9046 4.3162 17 6 3.2093 -2.6052 1.9338 18 6 2.7141 -1.8849 0.8625 19 9 2.9524 -2.3019 -0.4003 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.5611 1.9274 0.8309 24 1 3.0797 1.3445 0.1082 25 1 1.9894 4.8549 -2.8240 26 1 1.1594 0.5993 2.5558 27 1 2.0331 -0.6886 4.4621 28 1 3.9837 -3.7097 4.1616 29 1 3.2943 -2.6045 5.2227 30 1 3.7857 -3.5020 1.7615 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020474817.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:47 Heat of formation + Delta-G solvation = -7.862442 kcal Electronic energy + Delta-G solvation = -15106.862921 eV Core-core repulsion = 12430.689515 eV Total energy + Delta-G solvation = -2676.173407 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.27550 -39.31702 -36.71946 -33.50263 -32.26818 -30.30711 -28.41682 -27.39526 -24.57115 -22.84641 -21.83527 -20.15048 -17.60350 -17.25294 -16.79346 -15.77511 -15.19772 -14.99884 -14.85383 -14.39155 -13.77955 -13.67917 -13.39950 -12.69384 -12.39665 -12.31882 -12.08984 -11.58935 -11.22168 -11.09506 -10.53000 -10.52067 -10.08644 -9.83194 -9.29747 -8.57221 -8.55281 -7.52905 -7.35182 -6.03551 -4.01000 1.47011 1.65603 3.30258 3.37124 3.39092 3.73004 3.89775 4.43369 4.64608 4.80483 5.04834 5.23985 5.28424 5.58704 5.75816 5.96176 6.13924 6.17420 6.31780 6.34545 6.64820 6.70799 6.85943 6.89695 7.03329 7.39998 7.62632 7.67498 7.86646 8.16630 8.68769 9.05158 9.57568 11.09449 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.034779 B = 0.007946 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.896851 B = 3522.990960 C = 3833.453528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.494 5.494 3 C 0.169 3.831 4 C -0.510 4.510 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.018 3.982 13 C -0.077 4.077 14 C -0.201 4.201 15 C 0.226 3.774 16 N -0.880 5.880 17 C -0.235 4.235 18 C 0.165 3.835 19 F -0.126 7.126 20 H 0.084 0.916 21 H 0.017 0.983 22 H 0.049 0.951 23 H -0.007 1.007 24 H 0.024 0.976 25 H 0.264 0.736 26 H 0.128 0.872 27 H 0.120 0.880 28 H 0.396 0.604 29 H 0.397 0.603 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 -11.822 14.268 18.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.215 5.215 3 C 0.044 3.956 4 C -0.548 4.548 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.080 4.080 13 C -0.097 4.097 14 C -0.224 4.224 15 C 0.122 3.878 16 N -0.420 5.420 17 C -0.259 4.259 18 C 0.144 3.856 19 F -0.104 7.104 20 H 0.102 0.898 21 H 0.036 0.964 22 H 0.067 0.933 23 H 0.011 0.989 24 H 0.042 0.958 25 H 0.074 0.926 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.224 0.776 29 H 0.225 0.775 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.909 -11.841 13.613 18.143 hybrid contribution 0.530 0.779 1.423 1.707 sum 2.439 -11.062 15.036 18.825 Atomic orbital electron populations 1.22267 0.86591 0.99910 1.01496 1.59646 1.07899 1.16718 1.37279 1.20252 0.95018 0.82844 0.97513 1.21022 1.35728 0.97209 1.00843 0.89925 1.24867 0.95732 0.97297 0.95283 1.69888 1.46817 1.13298 1.23812 0.86896 0.81059 0.79279 0.82784 1.20088 1.21135 1.19222 1.18971 1.02407 0.95942 0.90638 1.21426 0.97545 0.98735 0.92038 1.20452 1.05686 0.97122 0.99128 1.17376 0.92330 0.90963 0.87103 1.42429 1.62662 1.30885 1.06023 1.20317 1.10716 1.04382 0.90450 1.17309 0.96478 0.92996 0.78847 1.91494 1.92179 1.89302 1.37469 0.89755 0.96415 0.93254 0.98921 0.95755 0.92638 0.85416 0.86156 0.77574 0.77461 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.88 9.10 60.07 0.55 1.43 16 2 N -0.49 -11.11 4.56 -180.16 -0.82 -11.93 16 3 C 0.17 4.24 3.37 -4.97 -0.02 4.23 16 4 C -0.51 -14.78 9.07 -34.44 -0.31 -15.10 16 5 H 0.08 2.60 7.35 -52.48 -0.39 2.21 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 7 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 8 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.02 0.34 4.69 -83.55 -0.39 -0.05 16 13 C -0.08 -1.28 8.71 -39.41 -0.34 -1.62 16 14 C -0.20 -2.73 9.89 -39.39 -0.39 -3.12 16 15 C 0.23 2.89 6.76 -83.67 -0.57 2.32 16 16 N -0.88 -7.55 9.10 32.45 0.30 -7.25 16 17 C -0.23 -3.38 9.87 -39.34 -0.39 -3.77 16 18 C 0.16 2.99 7.31 -39.28 -0.29 2.70 16 19 F -0.13 -2.49 17.07 2.25 0.04 -2.45 16 20 H 0.08 1.81 6.86 -51.93 -0.36 1.46 16 21 H 0.02 0.32 7.49 -51.93 -0.39 -0.06 16 22 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 23 H -0.01 -0.17 6.52 -51.93 -0.34 -0.51 16 24 H 0.02 0.63 7.49 -51.93 -0.39 0.24 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H 0.13 2.10 7.16 -52.49 -0.38 1.72 16 27 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.40 2.66 8.84 -40.82 -0.36 2.30 16 29 H 0.40 2.61 8.84 -40.82 -0.36 2.25 16 30 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 260.24 15.07 3.92 3.92 Total: -1.00 -32.24 260.24 -6.10 -38.34 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.39 Total: 0.34 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -2.25 Total: -11.03 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.25 Total: -46.21 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.24 -6.10 -38.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020474817.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.475 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds