Wall clock time and date at job start Mon Mar 30 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.46938 * 2 1 4 4 C 1.35978 * 125.66314 * 265.02488 * 3 2 1 5 5 C 1.35954 * 108.78409 * 179.97438 * 4 3 2 6 6 N 1.40708 * 126.10488 * 180.02562 * 5 4 3 7 7 C 1.40093 * 107.79019 * 359.77438 * 5 4 3 8 8 C 1.37649 * 125.66638 * 84.99830 * 3 2 1 9 9 C 1.46396 * 126.18366 * 359.97438 * 8 3 2 10 10 O 1.21664 * 119.99982 * 179.72118 * 9 8 3 11 11 O 1.34902 * 119.99613 * 0.02562 * 9 8 3 12 12 C 1.34846 * 116.99477 * 179.97438 * 11 9 8 13 13 H 1.08001 * 120.00532 * 359.97438 * 12 11 9 14 14 C 1.38793 * 119.99738 * 179.97438 * 12 11 9 15 15 N 1.31433 * 119.99878 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99897 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47193 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46807 * 119.99973 * 16 14 12 19 19 H 1.48502 * 109.47065 * 239.99824 * 16 14 12 20 20 H 1.08992 * 109.47646 * 300.00062 * 1 2 3 21 21 H 1.09002 * 109.47252 * 60.00557 * 1 2 3 22 22 H 1.08998 * 109.46841 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47342 * 239.99993 * 2 1 3 24 24 H 1.09002 * 109.47252 * 119.99443 * 2 1 3 25 25 H 1.08004 * 125.60879 * 359.97438 * 4 3 2 26 26 H 0.97001 * 119.99824 * 359.97438 * 6 5 4 27 27 H 0.96997 * 120.00235 * 179.97438 * 6 5 4 28 28 H 1.08004 * 126.44249 * 180.25192 * 7 5 4 29 29 H 0.96996 * 119.99911 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3728 2.0967 -1.1006 5 6 2.7736 3.3349 -0.7074 6 7 3.2167 4.3699 -1.5514 7 6 2.6612 3.3983 0.6876 8 6 2.1938 2.1704 1.1140 9 6 1.9270 1.7811 2.4998 10 8 2.1279 2.5710 3.4031 11 8 1.4642 0.5443 2.7757 12 6 1.2398 0.2499 4.0723 13 1 1.4311 0.9901 4.8352 14 6 0.7628 -1.0045 4.4266 15 7 0.5295 -1.9051 3.4982 16 14 0.4526 -1.4126 6.2229 17 1 0.7923 -0.2365 7.0636 18 1 -0.9789 -1.7597 6.4115 19 1 1.2984 -2.5663 6.6216 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 2.3413 1.7401 -2.1196 26 1 3.2562 4.2303 -2.5105 27 1 3.4827 5.2230 -1.1742 28 1 2.8976 4.2470 1.3124 29 1 0.1958 -2.7815 3.7458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041048210.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:29 Heat of formation + Delta-G solvation = -55.052623 kcal Electronic energy + Delta-G solvation = -15371.098626 eV Core-core repulsion = 12680.506110 eV Total energy + Delta-G solvation = -2690.592516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21882 -40.51552 -37.25187 -35.95049 -34.26290 -33.37696 -30.34578 -29.00432 -27.34338 -24.60594 -23.67864 -21.20843 -20.75644 -19.84828 -18.77503 -17.48619 -16.93416 -16.69618 -16.25402 -15.86322 -15.57263 -15.56042 -14.88694 -14.32084 -14.10486 -13.59474 -13.37192 -13.14027 -12.93411 -12.78454 -12.44165 -12.22394 -12.12964 -11.83879 -11.34091 -11.25281 -10.67538 -9.38086 -8.54372 -8.01120 -6.28904 0.41838 1.34951 1.39306 1.51475 1.94763 1.98409 2.11348 2.35506 2.72570 3.02270 3.43483 3.96651 4.14038 4.25217 4.37325 4.47901 4.60379 4.83266 4.93583 5.03873 5.13218 5.28847 5.31343 5.67136 5.82885 6.03622 6.40178 6.61359 6.91211 6.93075 7.40041 7.72979 8.65082 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.043921 B = 0.008090 C = 0.006990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.359202 B = 3460.153238 C = 4004.771232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.102 3.898 3 N -0.406 5.406 4 C -0.047 4.047 5 C 0.109 3.891 6 N -0.866 5.866 7 C -0.180 4.180 8 C -0.028 4.028 9 C 0.459 3.541 10 O -0.583 6.583 11 O -0.221 6.221 12 C -0.423 4.423 13 H 0.075 0.925 14 C 0.007 3.993 15 N -0.885 5.885 16 Si 1.012 2.988 17 H -0.271 1.271 18 H -0.259 1.259 19 H -0.259 1.259 20 H 0.023 0.977 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.127 0.873 24 H 0.072 0.928 25 H 0.205 0.795 26 H 0.407 0.593 27 H 0.402 0.598 28 H 0.136 0.864 29 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.675 3.175 -11.862 12.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 N -0.082 5.082 4 C -0.184 4.184 5 C 0.004 3.996 6 N -0.414 5.414 7 C -0.212 4.212 8 C -0.142 4.142 9 C 0.309 3.691 10 O -0.482 6.482 11 O -0.128 6.128 12 C -0.499 4.499 13 H 0.093 0.907 14 C -0.195 4.195 15 N -0.522 5.522 16 Si 0.831 3.169 17 H -0.195 1.195 18 H -0.184 1.184 19 H -0.184 1.184 20 H 0.042 0.958 21 H 0.094 0.906 22 H 0.098 0.902 23 H 0.145 0.855 24 H 0.091 0.909 25 H 0.222 0.778 26 H 0.237 0.763 27 H 0.230 0.770 28 H 0.154 0.846 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.473 2.664 -11.588 11.981 hybrid contribution -0.030 0.219 1.042 1.065 sum 1.443 2.882 -10.546 11.028 Atomic orbital electron populations 1.21856 0.93966 1.03076 1.01085 1.22050 0.96183 0.78580 1.04999 1.44145 1.47274 1.11981 1.04813 1.21788 1.12059 0.91975 0.92536 1.16810 1.03073 0.90666 0.89030 1.41403 1.79086 1.13470 1.07458 1.20785 1.09853 0.95987 0.94585 1.19282 1.16425 0.94218 0.84264 1.20463 0.78274 0.81776 0.88578 1.90626 1.55640 1.53794 1.48149 1.84001 1.69581 1.29249 1.30015 1.21440 1.47297 1.00288 0.80853 0.90726 1.26333 0.94726 0.93381 1.05068 1.70012 1.41446 1.05652 1.35046 0.84647 0.79075 0.78651 0.74486 1.19498 1.18368 1.18359 0.95755 0.90600 0.90169 0.85522 0.90907 0.77779 0.76323 0.76960 0.84595 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 10.17 71.98 0.73 -4.18 15 2 C 0.10 3.57 6.12 86.38 0.53 4.10 15 3 N -0.41 -14.96 2.77 -510.24 -1.41 -16.37 15 4 C -0.05 -1.33 11.41 83.52 0.95 -0.38 15 5 C 0.11 3.28 7.27 37.63 0.27 3.55 15 6 N -0.87 -17.70 9.19 -51.73 -0.48 -18.17 15 7 C -0.18 -7.07 10.66 22.69 0.24 -6.83 15 8 C -0.03 -1.28 6.88 40.33 0.28 -1.00 15 9 C 0.46 25.83 7.85 69.95 0.55 26.38 15 10 O -0.58 -35.70 16.13 19.30 0.31 -35.39 15 11 O -0.22 -13.11 6.83 9.68 0.07 -13.04 15 12 C -0.42 -25.98 9.65 67.95 0.66 -25.32 15 13 H 0.07 4.77 6.86 -2.91 -0.02 4.75 15 14 C 0.01 0.38 5.50 84.89 0.47 0.84 15 15 N -0.89 -49.53 13.67 21.63 0.30 -49.23 15 16 Si 1.01 43.34 29.55 68.60 2.03 45.37 15 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 15 18 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 20 H 0.02 1.04 7.75 -2.39 -0.02 1.02 15 21 H 0.08 2.12 8.14 -2.39 -0.02 2.10 15 22 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 23 H 0.13 3.18 8.12 -2.38 -0.02 3.16 15 24 H 0.07 3.23 6.45 -2.39 -0.02 3.22 15 25 H 0.21 3.81 8.06 -2.91 -0.02 3.79 15 26 H 0.41 5.84 8.96 -92.71 -0.83 5.01 15 27 H 0.40 7.25 8.96 -92.71 -0.83 6.42 15 28 H 0.14 5.28 8.06 -2.91 -0.02 5.25 15 29 H 0.28 14.14 8.31 -92.71 -0.77 13.37 15 Total: -1.00 -74.28 262.79 5.02 -69.26 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.47 Total: 20.42 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.68 Total: -2.84 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.59 Total: -83.78 kcal Atomic # 8 Polarization: -48.81 SS G_CDS: 0.38 Total: -48.43 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -74.28 5.02 -69.26 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041048210.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.205 kcal (2) G-P(sol) polarization free energy of solvation -74.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds