Wall clock time and date at job start Mon Mar 30 2020 03:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46916 * 2 1 4 4 C 1.46500 * 119.99446 * 269.99278 * 3 2 1 5 5 C 1.50697 * 109.47274 * 270.00029 * 4 3 2 6 6 H 1.07997 * 120.00286 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00108 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00191 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 119.99674 * 0.02562 * 7 5 4 10 10 H 1.48507 * 109.47044 * 90.00047 * 9 7 5 11 11 H 1.48503 * 109.47238 * 209.99747 * 9 7 5 12 12 H 1.48498 * 109.47398 * 330.00119 * 9 7 5 13 13 C 1.39133 * 120.00353 * 90.00197 * 3 2 1 14 14 C 1.39111 * 119.67734 * 4.99275 * 13 3 2 15 15 C 1.38315 * 119.12093 * 180.02562 * 14 13 3 16 16 C 1.39039 * 118.48635 * 0.02562 * 15 14 13 17 17 F 1.35097 * 120.35909 * 179.97438 * 16 15 14 18 18 C 1.38215 * 119.28365 * 0.02562 * 16 15 14 19 19 N 1.31999 * 120.82034 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46878 * 60.00201 * 1 2 3 21 21 H 1.08998 * 109.47358 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47457 * 300.00834 * 1 2 3 23 23 H 1.08994 * 109.47103 * 239.99821 * 2 1 3 24 24 H 1.09001 * 109.46878 * 119.99799 * 2 1 3 25 25 H 1.08997 * 109.47368 * 30.00921 * 4 3 2 26 26 H 1.09009 * 109.46702 * 150.00790 * 4 3 2 27 27 H 0.96993 * 119.99808 * 180.02562 * 8 7 5 28 28 H 1.08001 * 120.44047 * 0.27675 * 14 13 3 29 29 H 1.08003 * 120.75537 * 180.02562 * 15 14 13 30 30 H 1.07998 * 119.59404 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 5.3915 2.1832 -3.2573 9 14 3.0136 3.4368 -3.9282 10 1 3.1174 4.8568 -3.5060 11 1 3.4067 3.3146 -5.3550 12 1 1.6138 2.9711 -3.7588 13 6 2.2502 2.0372 1.2049 14 6 2.1167 1.3438 2.4034 15 6 2.3495 2.0073 3.5945 16 6 2.7094 3.3494 3.5466 17 9 2.9452 4.0343 4.6870 18 6 2.8224 3.9757 2.3196 19 7 2.5928 3.3157 1.1998 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.5818 1.6876 -2.0284 26 1 2.0956 3.1410 -1.1385 27 1 5.7177 2.5742 -4.0828 28 1 1.8389 0.3001 2.4038 29 1 2.2539 1.4945 4.5402 30 1 3.1021 5.0179 2.2766 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042454624.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:26 Heat of formation + Delta-G solvation = -18.033011 kcal Electronic energy + Delta-G solvation = -15091.698432 eV Core-core repulsion = 12415.083996 eV Total energy + Delta-G solvation = -2676.614436 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.66168 -41.09910 -37.81817 -34.83383 -33.46660 -32.00368 -31.20573 -28.41604 -25.34899 -24.42482 -23.75551 -21.70782 -19.05279 -18.68540 -18.14497 -17.86816 -16.58673 -16.38608 -15.94524 -15.86526 -14.93296 -14.67612 -14.60223 -14.26457 -14.09757 -13.67164 -13.47317 -13.29453 -13.00246 -12.55680 -12.35650 -12.05404 -11.84088 -11.71945 -10.82203 -10.79135 -10.61249 -10.26915 -8.32560 -8.25549 -6.34533 0.24842 0.39581 1.34647 1.37799 1.46429 2.20085 2.33140 2.88487 3.04256 3.34382 3.63563 3.90894 4.06115 4.12611 4.30429 4.41277 4.56961 4.78930 4.81116 4.91885 4.95161 5.01641 5.08406 5.10597 5.38582 5.50906 5.72757 6.01388 6.33633 6.58185 6.67874 7.25093 7.33368 8.86311 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.008806 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.701678 B = 3179.026076 C = 3794.384772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.113 3.887 3 N -0.596 5.596 4 C 0.237 3.763 5 C -0.527 4.527 6 H 0.024 0.976 7 C 0.011 3.989 8 N -0.949 5.949 9 Si 0.947 3.053 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.242 1.242 13 C 0.387 3.613 14 C -0.221 4.221 15 C -0.054 4.054 16 C -0.046 4.046 17 F -0.143 7.143 18 C 0.117 3.883 19 N -0.551 5.551 20 H 0.044 0.956 21 H 0.092 0.908 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.030 0.970 27 H 0.267 0.733 28 H 0.166 0.834 29 H 0.177 0.823 30 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.127 -2.466 11.161 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.009 4.009 3 N -0.305 5.305 4 C 0.114 3.886 5 C -0.566 4.566 6 H 0.043 0.957 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.770 3.230 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.166 1.166 13 C 0.151 3.849 14 C -0.246 4.246 15 C -0.080 4.080 16 C -0.070 4.070 17 F -0.122 7.122 18 C -0.043 4.043 19 N -0.268 5.268 20 H 0.063 0.937 21 H 0.111 0.889 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.183 0.817 29 H 0.194 0.806 30 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.977 -2.127 10.047 15.032 hybrid contribution 0.373 0.356 0.121 0.530 sum -10.604 -1.771 10.167 14.797 Atomic orbital electron populations 1.22140 0.94343 1.03348 1.01825 1.21659 0.95177 0.80617 1.03469 1.46833 1.67246 1.13725 1.02700 1.19245 0.94055 0.93403 0.81860 1.21594 0.97128 1.31468 1.06384 0.95725 1.25816 0.96576 0.97344 0.98940 1.70058 1.17505 1.46851 1.24515 0.85722 0.80289 0.79304 0.77643 1.19739 1.20508 1.16577 1.18872 0.90173 0.88465 0.87387 1.21576 1.10627 1.02553 0.89864 1.21611 0.94374 0.91812 1.00222 1.18447 1.12985 0.92858 0.82754 1.91432 1.93174 1.79592 1.48046 1.22776 0.94993 1.00765 0.85793 1.67289 1.19371 1.09273 1.30903 0.93665 0.88890 0.92392 0.91127 0.89019 0.94602 0.95154 0.92445 0.81651 0.80611 0.81126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16 2 C 0.11 3.40 5.97 86.38 0.52 3.91 16 3 N -0.60 -23.89 2.58 -708.16 -1.82 -25.72 16 4 C 0.24 11.34 4.29 85.63 0.37 11.71 16 5 C -0.53 -30.62 9.94 25.60 0.25 -30.37 16 6 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16 7 C 0.01 0.63 5.47 84.66 0.46 1.09 16 8 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 9 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 13 C 0.39 14.92 7.37 133.03 0.98 15.90 16 14 C -0.22 -6.43 9.27 22.50 0.21 -6.22 16 15 C -0.05 -1.41 10.15 22.48 0.23 -1.18 16 16 C -0.05 -1.37 7.34 22.46 0.16 -1.20 16 17 F -0.14 -4.10 17.28 44.97 0.78 -3.32 16 18 C 0.12 4.02 11.16 84.66 0.94 4.97 16 19 N -0.55 -23.04 9.08 -193.04 -1.75 -24.79 16 20 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 23 H 0.07 2.29 8.07 -2.39 -0.02 2.28 16 24 H 0.09 2.27 5.97 -2.39 -0.01 2.26 16 25 H 0.04 1.63 7.13 -2.39 -0.02 1.62 16 26 H 0.03 1.52 6.72 -2.38 -0.02 1.51 16 27 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.17 3.71 6.02 -2.91 -0.02 3.69 16 29 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -70.44 263.16 5.33 -65.11 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.08 Total: 6.51 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.87 Total: -4.34 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.28 Total: -110.14 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -70.44 5.33 -65.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454624.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.080 kcal (2) G-P(sol) polarization free energy of solvation -70.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds