Wall clock time and date at job start Mon Mar 30 2020 03:41:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46502 * 109.46916 * 2 1
4 4 C 1.46500 * 119.99446 * 269.99278 * 3 2 1
5 5 C 1.50697 * 109.47274 * 270.00029 * 4 3 2
6 6 H 1.07997 * 120.00286 * 0.02562 * 5 4 3
7 7 C 1.37883 * 120.00108 * 180.02562 * 5 4 3
8 8 N 1.31513 * 120.00191 * 180.02562 * 7 5 4
9 9 Si 1.86802 * 119.99674 * 0.02562 * 7 5 4
10 10 H 1.48507 * 109.47044 * 90.00047 * 9 7 5
11 11 H 1.48503 * 109.47238 * 209.99747 * 9 7 5
12 12 H 1.48498 * 109.47398 * 330.00119 * 9 7 5
13 13 C 1.39133 * 120.00353 * 90.00197 * 3 2 1
14 14 C 1.39111 * 119.67734 * 4.99275 * 13 3 2
15 15 C 1.38315 * 119.12093 * 180.02562 * 14 13 3
16 16 C 1.39039 * 118.48635 * 0.02562 * 15 14 13
17 17 F 1.35097 * 120.35909 * 179.97438 * 16 15 14
18 18 C 1.38215 * 119.28365 * 0.02562 * 16 15 14
19 19 N 1.31999 * 120.82034 * 0.02562 * 18 16 15
20 20 H 1.09001 * 109.46878 * 60.00201 * 1 2 3
21 21 H 1.08998 * 109.47358 * 179.97438 * 1 2 3
22 22 H 1.08998 * 109.47457 * 300.00834 * 1 2 3
23 23 H 1.08994 * 109.47103 * 239.99821 * 2 1 3
24 24 H 1.09001 * 109.46878 * 119.99799 * 2 1 3
25 25 H 1.08997 * 109.47368 * 30.00921 * 4 3 2
26 26 H 1.09009 * 109.46702 * 150.00790 * 4 3 2
27 27 H 0.96993 * 119.99808 * 180.02562 * 8 7 5
28 28 H 1.08001 * 120.44047 * 0.27675 * 14 13 3
29 29 H 1.08003 * 120.75537 * 180.02562 * 15 14 13
30 30 H 1.07998 * 119.59404 * 180.02562 * 18 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.2626 2.0717 -1.2688
5 6 3.6858 1.8349 -1.7037
6 1 4.3427 1.2302 -1.0961
7 6 4.1495 2.3903 -2.8775
8 7 5.3915 2.1832 -3.2573
9 14 3.0136 3.4368 -3.9282
10 1 3.1174 4.8568 -3.5060
11 1 3.4067 3.3146 -5.3550
12 1 1.6138 2.9711 -3.7588
13 6 2.2502 2.0372 1.2049
14 6 2.1167 1.3438 2.4034
15 6 2.3495 2.0073 3.5945
16 6 2.7094 3.3494 3.5466
17 9 2.9452 4.0343 4.6870
18 6 2.8224 3.9757 2.3196
19 7 2.5928 3.3157 1.1998
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3634 0.5139 0.8899
23 1 1.8933 -0.5138 -0.8899
24 1 1.8933 -0.5138 0.8900
25 1 1.5818 1.6876 -2.0284
26 1 2.0956 3.1410 -1.1385
27 1 5.7177 2.5742 -4.0828
28 1 1.8389 0.3001 2.4038
29 1 2.2539 1.4945 4.5402
30 1 3.1021 5.0179 2.2766
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000042454624.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:26
Heat of formation + Delta-G solvation = -18.033011 kcal
Electronic energy + Delta-G solvation = -15091.698432 eV
Core-core repulsion = 12415.083996 eV
Total energy + Delta-G solvation = -2676.614436 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.102 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-49.66168 -41.09910 -37.81817 -34.83383 -33.46660 -32.00368 -31.20573 -28.41604
-25.34899 -24.42482 -23.75551 -21.70782 -19.05279 -18.68540 -18.14497 -17.86816
-16.58673 -16.38608 -15.94524 -15.86526 -14.93296 -14.67612 -14.60223 -14.26457
-14.09757 -13.67164 -13.47317 -13.29453 -13.00246 -12.55680 -12.35650 -12.05404
-11.84088 -11.71945 -10.82203 -10.79135 -10.61249 -10.26915 -8.32560 -8.25549
-6.34533 0.24842 0.39581 1.34647 1.37799 1.46429 2.20085 2.33140
2.88487 3.04256 3.34382 3.63563 3.90894 4.06115 4.12611 4.30429
4.41277 4.56961 4.78930 4.81116 4.91885 4.95161 5.01641 5.08406
5.10597 5.38582 5.50906 5.72757 6.01388 6.33633 6.58185 6.67874
7.25093 7.33368 8.86311
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.026770 B = 0.008806 C = 0.007378
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1045.701678 B = 3179.026076 C = 3794.384772
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.113 3.887
3 N -0.596 5.596
4 C 0.237 3.763
5 C -0.527 4.527
6 H 0.024 0.976
7 C 0.011 3.989
8 N -0.949 5.949
9 Si 0.947 3.053
10 H -0.272 1.272
11 H -0.280 1.280
12 H -0.242 1.242
13 C 0.387 3.613
14 C -0.221 4.221
15 C -0.054 4.054
16 C -0.046 4.046
17 F -0.143 7.143
18 C 0.117 3.883
19 N -0.551 5.551
20 H 0.044 0.956
21 H 0.092 0.908
22 H 0.057 0.943
23 H 0.070 0.930
24 H 0.092 0.908
25 H 0.036 0.964
26 H 0.030 0.970
27 H 0.267 0.733
28 H 0.166 0.834
29 H 0.177 0.823
30 H 0.172 0.828
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.127 -2.466 11.161 15.952
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.009 4.009
3 N -0.305 5.305
4 C 0.114 3.886
5 C -0.566 4.566
6 H 0.043 0.957
7 C -0.187 4.187
8 N -0.589 5.589
9 Si 0.770 3.230
10 H -0.197 1.197
11 H -0.205 1.205
12 H -0.166 1.166
13 C 0.151 3.849
14 C -0.246 4.246
15 C -0.080 4.080
16 C -0.070 4.070
17 F -0.122 7.122
18 C -0.043 4.043
19 N -0.268 5.268
20 H 0.063 0.937
21 H 0.111 0.889
22 H 0.076 0.924
23 H 0.089 0.911
24 H 0.110 0.890
25 H 0.054 0.946
26 H 0.048 0.952
27 H 0.076 0.924
28 H 0.183 0.817
29 H 0.194 0.806
30 H 0.189 0.811
Dipole moment (debyes) X Y Z Total
from point charges -10.977 -2.127 10.047 15.032
hybrid contribution 0.373 0.356 0.121 0.530
sum -10.604 -1.771 10.167 14.797
Atomic orbital electron populations
1.22140 0.94343 1.03348 1.01825 1.21659 0.95177 0.80617 1.03469
1.46833 1.67246 1.13725 1.02700 1.19245 0.94055 0.93403 0.81860
1.21594 0.97128 1.31468 1.06384 0.95725 1.25816 0.96576 0.97344
0.98940 1.70058 1.17505 1.46851 1.24515 0.85722 0.80289 0.79304
0.77643 1.19739 1.20508 1.16577 1.18872 0.90173 0.88465 0.87387
1.21576 1.10627 1.02553 0.89864 1.21611 0.94374 0.91812 1.00222
1.18447 1.12985 0.92858 0.82754 1.91432 1.93174 1.79592 1.48046
1.22776 0.94993 1.00765 0.85793 1.67289 1.19371 1.09273 1.30903
0.93665 0.88890 0.92392 0.91127 0.89019 0.94602 0.95154 0.92445
0.81651 0.80611 0.81126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.69 10.24 71.98 0.74 -2.95 16
2 C 0.11 3.40 5.97 86.38 0.52 3.91 16
3 N -0.60 -23.89 2.58 -708.16 -1.82 -25.72 16
4 C 0.24 11.34 4.29 85.63 0.37 11.71 16
5 C -0.53 -30.62 9.94 25.60 0.25 -30.37 16
6 H 0.02 1.62 8.06 -2.91 -0.02 1.59 16
7 C 0.01 0.63 5.47 84.66 0.46 1.09 16
8 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16
9 Si 0.95 44.29 27.47 68.60 1.88 46.18 16
10 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16
11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16
12 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16
13 C 0.39 14.92 7.37 133.03 0.98 15.90 16
14 C -0.22 -6.43 9.27 22.50 0.21 -6.22 16
15 C -0.05 -1.41 10.15 22.48 0.23 -1.18 16
16 C -0.05 -1.37 7.34 22.46 0.16 -1.20 16
17 F -0.14 -4.10 17.28 44.97 0.78 -3.32 16
18 C 0.12 4.02 11.16 84.66 0.94 4.97 16
19 N -0.55 -23.04 9.08 -193.04 -1.75 -24.79 16
20 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
21 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
22 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16
23 H 0.07 2.29 8.07 -2.39 -0.02 2.28 16
24 H 0.09 2.27 5.97 -2.39 -0.01 2.26 16
25 H 0.04 1.63 7.13 -2.39 -0.02 1.62 16
26 H 0.03 1.52 6.72 -2.38 -0.02 1.51 16
27 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16
28 H 0.17 3.71 6.02 -2.91 -0.02 3.69 16
29 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16
30 H 0.17 5.08 8.06 -2.91 -0.02 5.06 16
Total: -1.00 -70.44 263.16 5.33 -65.11
By element:
Atomic # 1 Polarization: 5.43 SS G_CDS: 1.08 Total: 6.51 kcal
Atomic # 6 Polarization: -9.20 SS G_CDS: 4.87 Total: -4.34 kcal
Atomic # 7 Polarization: -106.86 SS G_CDS: -3.28 Total: -110.14 kcal
Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal
Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal
Total: -70.44 5.33 -65.11 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000042454624.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.080 kcal
(2) G-P(sol) polarization free energy of solvation -70.445 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.033 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds