Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 C 1.52998 * 109.47291 * 120.00701 * 2 1 3 13 13 H 1.09000 * 109.46986 * 60.00008 * 12 2 1 14 14 O 1.42904 * 109.46855 * 180.02562 * 12 2 1 15 15 C 1.50696 * 109.46969 * 299.99521 * 12 2 1 16 16 C 1.38237 * 119.97942 * 279.72633 * 15 12 2 17 17 C 1.38198 * 120.02657 * 179.72710 * 16 15 12 18 18 C 1.38455 * 119.97490 * 0.52729 * 17 16 15 19 19 F 1.35105 * 120.02993 * 179.72816 * 18 17 16 20 20 C 1.38460 * 119.94888 * 359.74481 * 18 17 16 21 21 C 1.38195 * 119.97311 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 24 24 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 25 25 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 26 26 H 0.96698 * 114.00686 * 59.99862 * 14 12 2 27 27 H 1.08004 * 119.98540 * 359.97438 * 16 15 12 28 28 H 1.08000 * 120.01472 * 180.29809 * 17 16 15 29 29 H 1.07997 * 120.01697 * 179.97438 * 20 18 17 30 30 H 1.07999 * 119.99243 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.3411 -2.1690 -4.4082 10 1 2.4753 -0.1452 -5.1142 11 1 3.6277 -1.7556 -3.7145 12 6 2.0400 -0.7214 1.2491 13 1 1.6767 -1.7490 1.2490 14 8 3.4690 -0.7208 1.2493 15 6 1.5378 -0.0111 2.4796 16 6 2.1759 1.1308 2.9269 17 6 1.7127 1.7861 4.0520 18 6 0.6158 1.2926 4.7376 19 9 0.1654 1.9293 5.8408 20 6 -0.0192 0.1457 4.2920 21 6 0.4429 -0.5053 3.1639 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.6955 1.1524 -3.4842 26 1 3.8621 0.1627 1.2496 27 1 3.0343 1.5131 2.3945 28 1 2.2085 2.6809 4.3984 29 1 -0.8746 -0.2405 4.8262 30 1 -0.0519 -1.4002 2.8163 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049807022.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -83.763366 kcal Electronic energy + Delta-G solvation = -15120.855491 eV Core-core repulsion = 12409.098022 eV Total energy + Delta-G solvation = -2711.757469 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.71399 -39.27602 -36.39881 -33.60117 -31.40524 -30.81870 -29.44817 -25.15442 -24.76792 -22.84370 -21.56391 -19.70404 -17.66732 -16.84997 -16.15900 -15.65482 -15.41651 -15.02312 -14.40757 -14.05156 -13.51425 -13.31664 -12.92333 -12.71273 -12.41628 -11.95392 -11.50922 -11.06050 -10.91369 -10.74212 -10.68674 -10.30375 -10.12363 -10.08792 -9.00496 -8.92778 -8.80258 -8.37154 -8.12540 -6.00563 -4.06623 1.40189 1.45861 3.30436 3.37327 3.41930 3.83687 4.42926 4.45648 4.92124 5.04114 5.16337 5.26692 5.34495 5.51948 5.60834 5.99240 6.21326 6.25959 6.31054 6.42056 6.51889 6.77381 6.91137 7.04596 7.11799 7.19657 7.67479 7.85247 8.07059 8.35079 8.43685 8.98064 9.58207 11.05227 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.052918 B = 0.006672 C = 0.006444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.994371 B = 4195.375018 C = 4344.135535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.024 3.976 3 H 0.028 0.972 4 C -0.505 4.505 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.147 3.853 13 H 0.096 0.904 14 O -0.554 6.554 15 C -0.096 4.096 16 C -0.088 4.088 17 C -0.151 4.151 18 C 0.078 3.922 19 F -0.148 7.148 20 C -0.153 4.153 21 C -0.084 4.084 22 H 0.026 0.974 23 H 0.011 0.989 24 H 0.085 0.915 25 H 0.259 0.741 26 H 0.365 0.635 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 0.490 10.923 10.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.005 3.995 3 H 0.047 0.953 4 C -0.543 4.543 5 H 0.079 0.921 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.088 3.912 13 H 0.114 0.886 14 O -0.358 6.358 15 C -0.096 4.096 16 C -0.106 4.106 17 C -0.170 4.170 18 C 0.059 3.941 19 F -0.127 7.127 20 C -0.172 4.172 21 C -0.102 4.102 22 H 0.045 0.955 23 H 0.030 0.970 24 H 0.103 0.897 25 H 0.069 0.931 26 H 0.211 0.789 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.381 -0.023 10.822 10.828 hybrid contribution 0.095 0.396 -0.687 0.798 sum -0.287 0.373 10.135 10.146 Atomic orbital electron populations 1.21791 0.98126 0.99117 1.00583 1.19305 0.93411 0.95874 0.90862 0.95349 1.21109 1.30629 1.12624 0.89948 0.92067 1.24963 0.95125 0.95041 0.99034 1.69890 1.36727 1.23279 1.23322 0.86578 0.79353 0.79362 0.82634 1.20774 1.21355 1.19822 1.21216 0.80128 0.99246 0.90600 0.88640 1.86531 1.19450 1.32865 1.96965 1.21114 0.95412 0.95716 0.97385 1.20778 0.99886 0.94638 0.95279 1.21038 0.97070 1.01604 0.97283 1.17658 0.96591 0.93932 0.85962 1.91455 1.88768 1.81403 1.51076 1.21065 1.01535 0.95729 0.98871 1.20893 0.95942 0.99813 0.93592 0.95495 0.96985 0.89671 0.93070 0.78886 0.85239 0.85186 0.85206 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.88 16 2 C 0.02 0.57 2.07 -91.77 -0.19 0.38 16 3 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.50 -13.48 8.23 -34.44 -0.28 -13.77 16 5 H 0.06 1.66 7.70 -52.49 -0.40 1.26 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.12 11.30 55.43 0.63 -24.49 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 2.91 2.74 -27.89 -0.08 2.83 16 13 H 0.10 1.91 8.00 -51.93 -0.42 1.50 16 14 O -0.55 -10.86 12.77 -35.23 -0.45 -11.31 16 15 C -0.10 -1.63 4.07 -104.62 -0.43 -2.06 16 16 C -0.09 -1.36 9.32 -39.60 -0.37 -1.73 16 17 C -0.15 -2.17 10.03 -39.52 -0.40 -2.57 16 18 C 0.08 1.15 7.30 -39.42 -0.29 0.86 16 19 F -0.15 -2.17 17.27 2.25 0.04 -2.14 16 20 C -0.15 -2.19 10.03 -39.52 -0.40 -2.58 16 21 C -0.08 -1.30 8.70 -39.59 -0.34 -1.65 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.01 0.24 6.64 -51.93 -0.34 -0.11 16 24 H 0.08 2.22 6.05 -51.93 -0.31 1.91 16 25 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 26 H 0.36 6.02 7.49 45.56 0.34 6.36 16 27 H 0.13 1.79 6.77 -52.48 -0.36 1.43 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.13 1.83 8.04 -52.49 -0.42 1.41 16 LS Contribution 259.94 15.07 3.92 3.92 Total: -1.00 -28.87 259.94 -6.17 -35.05 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -2.74 Total: 4.49 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -2.55 Total: -21.64 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.63 Total: -24.49 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -0.45 Total: -11.31 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.87 -6.17 -35.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049807022.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.716 kcal (2) G-P(sol) polarization free energy of solvation -28.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds