Wall clock time and date at job start Mon Mar 30 2020 03:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47363 * 2 1 4 4 C 1.50697 * 109.47006 * 240.00035 * 2 1 3 5 5 H 1.07997 * 120.00521 * 245.42568 * 4 2 1 6 6 C 1.37885 * 119.99846 * 65.43346 * 4 2 1 7 7 N 1.31514 * 119.99956 * 9.74877 * 6 4 2 8 8 Si 1.86805 * 119.99737 * 189.74951 * 6 4 2 9 9 H 1.48496 * 109.46915 * 84.99340 * 8 6 4 10 10 H 1.48497 * 109.46715 * 204.98988 * 8 6 4 11 11 H 1.48497 * 109.47148 * 324.99023 * 8 6 4 12 12 N 1.46899 * 109.47255 * 120.00052 * 2 1 3 13 13 C 1.46903 * 110.99804 * 58.95275 * 12 2 1 14 14 C 1.39145 * 110.99937 * 294.99930 * 12 2 1 15 15 N 1.32358 * 119.72041 * 0.02562 * 14 12 2 16 16 C 1.31983 * 121.64808 * 179.70798 * 15 14 12 17 17 C 1.38027 * 120.89964 * 0.53440 * 16 15 14 18 18 C 1.38860 * 119.34008 * 359.47706 * 17 16 15 19 19 C 1.38485 * 118.48944 * 0.25552 * 18 17 16 20 20 F 1.35099 * 120.47115 * 180.02562 * 19 18 17 21 21 H 1.08996 * 109.47494 * 183.15369 * 1 2 3 22 22 H 1.09005 * 109.46708 * 303.15535 * 1 2 3 23 23 H 1.08995 * 109.47121 * 63.14960 * 1 2 3 24 24 H 0.96997 * 119.99816 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.47202 * 296.04482 * 13 12 2 26 26 H 1.09000 * 109.47116 * 56.04596 * 13 12 2 27 27 H 1.09000 * 109.46819 * 176.04357 * 13 12 2 28 28 H 1.08006 * 119.54654 * 180.28841 * 16 15 14 29 29 H 1.08000 * 120.32925 * 179.75282 * 17 16 15 30 30 H 1.08003 * 120.75407 * 180.27002 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.5790 -1.6367 -1.1339 6 6 1.7940 -0.1776 -2.4797 7 7 1.3017 1.0366 -2.5937 8 14 2.1704 -1.1804 -4.0101 9 1 1.0156 -2.0605 -4.3215 10 1 2.4176 -0.2652 -5.1531 11 1 3.3771 -2.0126 -3.7722 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6683 0.0005 2.3537 15 7 0.9803 1.1273 2.2588 16 6 0.6221 1.8122 3.3287 17 6 0.9643 1.3803 4.5942 18 6 1.6859 0.2028 4.7393 19 6 2.0433 -0.4977 3.5994 20 9 2.7451 -1.6482 3.6941 21 1 -0.3634 -1.0260 0.0565 22 1 -0.3633 0.5621 0.8604 23 1 -0.3633 0.4641 -0.9168 24 1 1.1337 1.4113 -3.4725 25 1 0.4419 -2.0731 1.3347 26 1 1.8166 -2.5950 0.3317 27 1 1.9617 -2.5869 2.1057 28 1 0.0570 2.7252 3.2120 29 1 0.6698 1.9500 5.4631 30 1 1.9620 -0.1586 5.7189 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063096048.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:57 Heat of formation + Delta-G solvation = -3.516592 kcal Electronic energy + Delta-G solvation = -15597.976872 eV Core-core repulsion = 12921.991916 eV Total energy + Delta-G solvation = -2675.984957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.88028 -41.36177 -38.47264 -34.84795 -33.14705 -31.69415 -30.18412 -27.25740 -27.02845 -24.63472 -23.70401 -21.65372 -18.71526 -18.26324 -18.17160 -17.53072 -16.83627 -16.59685 -15.76825 -15.45952 -15.22907 -14.80167 -14.76724 -14.04502 -13.84137 -13.44355 -13.19779 -12.88011 -12.82536 -12.56917 -12.50283 -12.15677 -11.88923 -11.10650 -10.88849 -10.48685 -10.33357 -10.18324 -8.82001 -8.15871 -6.24816 0.08524 0.27977 1.41634 1.42449 1.52439 2.39736 2.67962 2.88320 3.14958 3.35115 3.62438 3.87085 4.11583 4.27695 4.47708 4.58285 4.70373 4.79969 4.91791 5.01512 5.07933 5.10808 5.13547 5.48287 5.56116 5.63763 5.79277 6.04101 6.19091 6.61131 6.81540 7.15107 7.42196 8.93445 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.044313 B = 0.008439 C = 0.007435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.719209 B = 3317.284805 C = 3764.833896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.015 0.985 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.269 1.269 12 N -0.490 5.490 13 C 0.033 3.967 14 C 0.271 3.729 15 N -0.522 5.522 16 C 0.100 3.900 17 C -0.167 4.167 18 C -0.080 4.080 19 C -0.003 4.003 20 F -0.136 7.136 21 H 0.027 0.973 22 H 0.054 0.946 23 H 0.040 0.960 24 H 0.263 0.737 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.183 0.817 29 H 0.187 0.813 30 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.134 -1.256 14.512 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.127 3.873 3 H 0.033 0.967 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.206 5.206 13 C -0.113 4.113 14 C 0.038 3.962 15 N -0.236 5.236 16 C -0.058 4.058 17 C -0.188 4.188 18 C -0.106 4.106 19 C -0.028 4.028 20 F -0.115 7.115 21 H 0.046 0.954 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.200 0.800 29 H 0.204 0.796 30 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -1.845 -0.946 13.440 13.599 hybrid contribution -0.096 -0.675 -0.479 0.833 sum -1.941 -1.622 12.961 13.206 Atomic orbital electron populations 1.22137 0.99110 0.98416 1.00603 1.18894 0.90851 0.93105 0.84452 0.96707 1.21424 1.36127 1.08498 0.91176 0.92156 1.25724 0.95150 0.95571 1.01950 1.70123 1.45686 1.15210 1.24489 0.85531 0.78773 0.78551 0.78557 1.19695 1.20916 1.19330 1.59379 1.54986 1.04387 1.01803 1.22464 0.97844 0.87004 1.03959 1.20514 0.92551 0.92670 0.90463 1.67984 1.12266 1.07933 1.35456 1.23332 0.95938 0.98668 0.87903 1.22288 1.00152 0.96803 0.99571 1.21890 0.96223 0.94584 0.97909 1.18406 1.02674 0.87417 0.94298 1.91388 1.76796 1.46606 1.96675 0.95410 0.92709 0.94109 0.92837 0.94981 0.90310 0.89704 0.79986 0.79602 0.80259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.33 8.37 71.98 0.60 -6.73 16 2 C 0.23 12.62 1.83 44.17 0.08 12.71 16 3 H 0.01 0.93 7.69 -2.38 -0.02 0.91 16 4 C -0.53 -30.53 7.93 25.60 0.20 -30.33 16 5 H 0.06 3.39 6.58 -2.91 -0.02 3.37 16 6 C 0.02 0.89 5.17 84.66 0.44 1.33 16 7 N -0.92 -54.76 12.17 21.45 0.26 -54.50 16 8 Si 0.96 44.51 29.55 68.60 2.03 46.54 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 N -0.49 -23.16 4.73 -706.55 -3.34 -26.51 16 13 C 0.03 1.35 8.46 127.69 1.08 2.43 16 14 C 0.27 11.22 6.05 133.07 0.80 12.02 16 15 N -0.52 -20.93 6.47 -193.03 -1.25 -22.18 16 16 C 0.10 2.80 11.17 84.62 0.95 3.74 16 17 C -0.17 -3.44 10.10 22.37 0.23 -3.22 16 18 C -0.08 -1.87 10.15 22.48 0.23 -1.64 16 19 C 0.00 -0.11 7.00 22.59 0.16 0.05 16 20 F -0.14 -4.62 14.80 44.97 0.67 -3.95 16 21 H 0.03 1.33 6.30 -2.39 -0.02 1.31 16 22 H 0.05 2.62 5.70 -2.38 -0.01 2.60 16 23 H 0.04 2.27 6.85 -2.39 -0.02 2.25 16 24 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 25 H 0.03 1.28 6.44 -2.39 -0.02 1.26 16 26 H 0.08 3.35 6.32 -2.39 -0.02 3.33 16 27 H 0.08 3.07 5.73 -2.39 -0.01 3.06 16 28 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 29 H 0.19 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -68.79 249.37 4.28 -64.51 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.15 Total: 5.73 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 4.77 Total: -9.63 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -4.33 Total: -103.19 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.67 Total: -3.95 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.79 4.28 -64.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063096048.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.990 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds