Wall clock time and date at job start Mon Mar 30 2020 03:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47221 * 2 1 4 4 C 1.50704 * 109.46987 * 119.99613 * 2 1 3 5 5 H 1.08000 * 119.99512 * 119.99977 * 4 2 1 6 6 C 1.37876 * 120.00293 * 300.00150 * 4 2 1 7 7 N 1.31516 * 119.99821 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47106 * 90.00413 * 8 6 4 10 10 H 1.48498 * 109.47011 * 210.00154 * 8 6 4 11 11 H 1.48496 * 109.47335 * 330.00004 * 8 6 4 12 12 N 1.46500 * 109.47361 * 239.99870 * 2 1 3 13 13 C 1.46494 * 120.00091 * 299.99901 * 12 2 1 14 14 C 1.38995 * 119.99661 * 119.99987 * 12 2 1 15 15 C 1.39069 * 119.68524 * 185.00190 * 14 12 2 16 16 C 1.38380 * 119.15738 * 179.97438 * 15 14 12 17 17 C 1.38757 * 118.53396 * 0.25426 * 16 15 14 18 18 C 1.38375 * 119.30154 * 359.47728 * 17 16 15 19 19 F 1.35104 * 119.59988 * 180.25841 * 18 17 16 20 20 N 1.32134 * 120.79616 * 0.53193 * 18 17 16 21 21 H 1.08997 * 109.47285 * 300.00352 * 1 2 3 22 22 H 1.08996 * 109.46813 * 59.99950 * 1 2 3 23 23 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00083 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47554 * 270.00179 * 13 12 2 26 26 H 1.09004 * 109.47085 * 29.99969 * 13 12 2 27 27 H 1.09003 * 109.47196 * 149.99624 * 13 12 2 28 28 H 1.08000 * 120.42646 * 0.02562 * 15 14 12 29 29 H 1.08002 * 120.73050 * 179.97438 * 16 15 14 30 30 H 1.07994 * 120.34994 * 179.75200 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4125 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5661 3.7121 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.8175 -0.0151 -2.1110 15 6 3.1913 -0.6427 -3.2944 16 6 3.9867 0.0401 -4.1977 17 6 4.3877 1.3309 -3.8841 18 6 3.9747 1.8975 -2.6911 19 9 4.3573 3.1558 -2.3822 20 7 3.2150 1.2206 -1.8481 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7086 1.1614 3.4844 25 1 2.4158 -2.7377 -0.9716 26 1 0.6905 -2.3002 -0.9846 27 1 1.6239 -2.2852 -2.5002 28 1 2.8644 -1.6501 -3.5061 29 1 4.2922 -0.4231 -5.1242 30 1 5.0120 1.8892 -4.5660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:01 Heat of formation + Delta-G solvation = 7.530475 kcal Electronic energy + Delta-G solvation = -15257.086355 eV Core-core repulsion = 12581.580435 eV Total energy + Delta-G solvation = -2675.505920 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.50570 -39.64482 -36.32275 -33.00585 -32.11089 -30.17603 -28.46606 -26.00640 -25.19057 -23.04647 -22.06198 -19.90422 -17.53174 -16.75755 -16.28358 -15.64015 -15.53554 -15.07403 -14.67555 -13.87411 -13.74532 -13.10088 -12.79178 -12.51159 -12.36415 -12.01601 -11.51857 -11.22398 -11.06287 -10.85310 -10.66304 -10.31194 -10.14296 -9.75423 -9.25025 -8.94736 -8.79867 -8.40403 -6.84796 -6.05570 -4.14328 1.57783 1.81977 3.27234 3.33739 3.35329 3.57502 4.24275 4.33554 4.47234 5.00008 5.24215 5.35362 5.48746 5.59630 5.75995 6.04180 6.17118 6.19489 6.28012 6.55867 6.72723 6.84045 6.96656 7.05561 7.40950 7.60442 7.80901 7.99665 8.19879 8.36125 8.61438 8.91430 9.51389 10.98484 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.008408 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.237774 B = 3329.398847 C = 3686.331262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.261 3.739 3 H 0.071 0.929 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.577 5.577 13 C 0.099 3.901 14 C 0.449 3.551 15 C -0.273 4.273 16 C -0.009 4.009 17 C -0.287 4.287 18 C 0.358 3.642 19 F -0.121 7.121 20 N -0.566 5.566 21 H 0.094 0.906 22 H 0.011 0.989 23 H 0.029 0.971 24 H 0.263 0.737 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.134 0.866 29 H 0.133 0.867 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.938 -3.268 -11.141 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.089 0.911 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.283 5.283 13 C -0.045 4.045 14 C 0.210 3.790 15 C -0.299 4.299 16 C -0.035 4.035 17 C -0.313 4.313 18 C 0.201 3.799 19 F -0.100 7.100 20 N -0.290 5.290 21 H 0.113 0.887 22 H 0.030 0.970 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.429 -2.867 -10.013 10.695 hybrid contribution 0.656 -0.542 0.301 0.903 sum 3.085 -3.409 -9.712 10.745 Atomic orbital electron populations 1.22130 0.98389 0.99317 1.00845 1.19056 0.90609 0.94671 0.79589 0.91097 1.21333 1.31702 1.12968 0.90338 0.92417 1.24882 0.94956 0.95010 0.98916 1.69876 1.36359 1.22647 1.23730 0.86502 0.78660 0.79848 0.82414 1.20628 1.21114 1.19983 1.47351 1.48145 1.10466 1.22332 1.21563 1.01400 0.81835 0.99660 1.17988 0.87270 0.86448 0.87272 1.21401 1.08976 1.03119 0.96356 1.20979 0.92391 0.92504 0.97606 1.21215 1.11908 0.98772 0.99372 1.17784 0.92086 0.80129 0.89870 1.91580 1.88284 1.36616 1.93529 1.66443 1.18521 1.09698 1.34310 0.88706 0.97037 0.95180 0.92700 0.93275 0.90599 0.92645 0.84841 0.84890 0.84964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.65 2.66 -69.08 -0.18 6.46 16 3 H 0.07 2.06 6.82 -51.93 -0.35 1.71 16 4 C -0.52 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.16 16 6 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.58 -12.41 2.87 -175.42 -0.50 -12.91 16 13 C 0.10 1.69 9.52 59.84 0.57 2.26 16 14 C 0.45 9.21 7.37 -155.02 -1.14 8.07 16 15 C -0.27 -4.35 9.27 -39.22 -0.36 -4.72 16 16 C -0.01 -0.13 10.16 -39.34 -0.40 -0.53 16 17 C -0.29 -4.35 10.08 -39.34 -0.40 -4.75 16 18 C 0.36 6.85 8.41 -17.37 -0.15 6.71 16 19 F -0.12 -2.29 17.29 2.25 0.04 -2.25 16 20 N -0.57 -12.65 8.86 -12.78 -0.11 -12.77 16 21 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 22 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 23 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 1.30 6.43 -51.93 -0.33 0.96 16 27 H 0.06 0.75 5.97 -51.93 -0.31 0.44 16 28 H 0.13 1.78 6.02 -52.49 -0.32 1.46 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 257.60 15.07 3.88 3.88 Total: -1.00 -29.87 257.60 -6.40 -36.28 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -3.20 Total: -1.25 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: -2.11 Total: -2.62 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.01 Total: -50.30 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.87 -6.40 -36.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.809 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds