Wall clock time and date at job start Mon Mar 30 2020 03:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47221 * 2 1 4 4 C 1.50704 * 109.46987 * 119.99613 * 2 1 3 5 5 H 1.08000 * 119.99512 * 119.99977 * 4 2 1 6 6 C 1.37876 * 120.00293 * 300.00150 * 4 2 1 7 7 N 1.31516 * 119.99821 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99952 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47106 * 90.00413 * 8 6 4 10 10 H 1.48498 * 109.47011 * 210.00154 * 8 6 4 11 11 H 1.48496 * 109.47335 * 330.00004 * 8 6 4 12 12 N 1.46500 * 109.47361 * 239.99870 * 2 1 3 13 13 C 1.46494 * 120.00091 * 299.99901 * 12 2 1 14 14 C 1.38995 * 119.99661 * 119.99987 * 12 2 1 15 15 C 1.39069 * 119.68524 * 185.00190 * 14 12 2 16 16 C 1.38380 * 119.15738 * 179.97438 * 15 14 12 17 17 C 1.38757 * 118.53396 * 0.25426 * 16 15 14 18 18 C 1.38375 * 119.30154 * 359.47728 * 17 16 15 19 19 F 1.35104 * 119.59988 * 180.25841 * 18 17 16 20 20 N 1.32134 * 120.79616 * 0.53193 * 18 17 16 21 21 H 1.08997 * 109.47285 * 300.00352 * 1 2 3 22 22 H 1.08996 * 109.46813 * 59.99950 * 1 2 3 23 23 H 1.08994 * 109.47116 * 179.97438 * 1 2 3 24 24 H 0.97004 * 120.00083 * 180.02562 * 7 6 4 25 25 H 1.08998 * 109.47554 * 270.00179 * 13 12 2 26 26 H 1.09004 * 109.47085 * 29.99969 * 13 12 2 27 27 H 1.09003 * 109.47196 * 149.99624 * 13 12 2 28 28 H 1.08000 * 120.42646 * 0.02562 * 15 14 12 29 29 H 1.08002 * 120.73050 * 179.97438 * 16 15 14 30 30 H 1.07994 * 120.34994 * 179.75200 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5458 4.4125 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5661 3.7121 12 7 2.0184 -0.6906 -1.1961 13 6 1.6646 -2.0932 -1.4279 14 6 2.8175 -0.0151 -2.1110 15 6 3.1913 -0.6427 -3.2944 16 6 3.9867 0.0401 -4.1977 17 6 4.3877 1.3309 -3.8841 18 6 3.9747 1.8975 -2.6911 19 9 4.3573 3.1558 -2.3822 20 7 3.2150 1.2206 -1.8481 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 0.7086 1.1614 3.4844 25 1 2.4158 -2.7377 -0.9716 26 1 0.6905 -2.3002 -0.9846 27 1 1.6239 -2.2852 -2.5002 28 1 2.8644 -1.6501 -3.5061 29 1 4.2922 -0.4231 -5.1242 30 1 5.0120 1.8892 -4.5660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097737.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:00 Heat of formation + Delta-G solvation = -10.512662 kcal Electronic energy + Delta-G solvation = -15257.868764 eV Core-core repulsion = 12581.580435 eV Total energy + Delta-G solvation = -2676.288329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.91943 -41.03790 -37.93139 -34.92362 -33.43666 -31.92808 -29.95416 -27.48618 -27.21231 -24.45104 -23.52471 -21.61585 -18.95171 -18.46519 -18.06195 -16.99668 -16.93474 -16.69431 -16.34033 -15.46760 -15.28056 -14.53686 -14.47296 -13.93726 -13.77809 -13.43401 -13.32502 -12.95852 -12.73809 -12.62569 -12.40014 -12.18059 -12.09460 -11.29294 -10.88827 -10.60418 -10.36270 -10.28447 -8.40368 -8.06793 -6.29777 0.25110 0.56138 1.38509 1.39780 1.49606 2.15815 2.41176 2.89339 3.01277 3.13570 3.83621 4.10146 4.32012 4.34133 4.54843 4.71051 4.79057 4.88243 4.92224 5.02713 5.08231 5.13471 5.34527 5.44044 5.59401 5.79722 5.92127 6.14945 6.25888 6.65794 6.82013 7.22533 7.41559 8.89702 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.031445 B = 0.008408 C = 0.007594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.237774 B = 3329.398847 C = 3686.331262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.269 3.731 3 H 0.022 0.978 4 C -0.535 4.535 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.263 1.263 12 N -0.598 5.598 13 C 0.099 3.901 14 C 0.415 3.585 15 C -0.258 4.258 16 C 0.005 3.995 17 C -0.261 4.261 18 C 0.318 3.682 19 F -0.133 7.133 20 N -0.625 5.625 21 H 0.066 0.934 22 H 0.017 0.983 23 H 0.044 0.956 24 H 0.263 0.737 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.191 0.809 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 -5.225 -13.415 14.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.040 0.960 4 C -0.574 4.574 5 H 0.072 0.928 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.204 1.204 11 H -0.188 1.188 12 N -0.307 5.307 13 C -0.043 4.043 14 C 0.179 3.821 15 C -0.283 4.283 16 C -0.020 4.020 17 C -0.286 4.286 18 C 0.164 3.836 19 F -0.112 7.112 20 N -0.350 5.350 21 H 0.085 0.915 22 H 0.036 0.964 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.184 0.816 29 H 0.208 0.792 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.468 -4.821 -12.334 13.689 hybrid contribution 0.421 0.119 0.862 0.967 sum 3.889 -4.702 -11.472 12.994 Atomic orbital electron populations 1.21908 0.97790 0.99807 0.99705 1.18526 0.90973 0.92576 0.81231 0.95978 1.21612 1.31479 1.12812 0.91497 0.92789 1.25704 0.95195 0.95719 1.01895 1.70020 1.37427 1.23952 1.24270 0.85512 0.77793 0.79170 0.78867 1.20969 1.20429 1.18768 1.47167 1.49803 1.11873 1.21819 1.21715 1.00848 0.79503 1.02212 1.18471 0.88331 0.86447 0.88868 1.21789 1.07876 1.04262 0.94414 1.21645 0.90222 0.91391 0.98736 1.21700 1.10056 0.99364 0.97486 1.18292 0.93605 0.80248 0.91495 1.91542 1.88496 1.37349 1.93836 1.66224 1.20321 1.11516 1.36913 0.91515 0.96356 0.93708 0.92742 0.93433 0.91245 0.88635 0.81610 0.79182 0.81364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.60 8.95 71.98 0.64 -5.96 16 2 C 0.27 14.24 2.66 44.25 0.12 14.36 16 3 H 0.02 1.38 6.82 -2.39 -0.02 1.36 16 4 C -0.54 -29.90 8.37 25.60 0.21 -29.69 16 5 H 0.05 2.97 7.65 -2.91 -0.02 2.95 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -54.03 11.32 21.45 0.24 -53.79 16 8 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 9 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.60 -25.78 2.87 -708.91 -2.03 -27.81 16 13 C 0.10 3.23 9.52 127.77 1.22 4.44 16 14 C 0.42 16.83 7.37 133.04 0.98 17.81 16 15 C -0.26 -7.28 9.27 22.50 0.21 -7.08 16 16 C 0.00 0.11 10.16 22.43 0.23 0.34 16 17 C -0.26 -7.01 10.08 22.43 0.23 -6.79 16 18 C 0.32 12.14 8.41 84.68 0.71 12.85 16 19 F -0.13 -5.17 17.29 44.97 0.78 -4.39 16 20 N -0.62 -28.72 8.86 -194.33 -1.72 -30.44 16 21 H 0.07 3.67 6.07 -2.39 -0.01 3.65 16 22 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.04 2.01 6.66 -2.39 -0.02 2.00 16 24 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.29 6.43 -2.38 -0.02 2.28 16 27 H 0.10 2.25 5.97 -2.39 -0.01 2.23 16 28 H 0.17 3.51 6.02 -2.91 -0.02 3.50 16 29 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 30 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -69.45 257.60 5.44 -64.01 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: 1.15 Total: 4.62 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 5.00 Total: 1.53 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -3.51 Total: -112.04 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 0.78 Total: -4.39 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.45 5.44 -64.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097737.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.497 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds