Wall clock time and date at job start Mon Mar 30 2020 03:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35958 * 117.00103 * 2 1 4 4 C 1.38662 * 120.05818 * 0.28002 * 3 2 1 5 5 C 1.38179 * 119.96578 * 180.22355 * 4 3 2 6 6 C 1.50707 * 119.95505 * 179.76818 * 5 4 3 7 7 H 1.08997 * 109.46649 * 359.72398 * 6 5 4 8 8 C 1.52994 * 109.47019 * 119.72585 * 6 5 4 9 9 C 1.50695 * 109.47014 * 239.72855 * 6 5 4 10 10 H 1.08004 * 120.00546 * 0.27454 * 9 6 5 11 11 C 1.37885 * 119.99721 * 179.97438 * 9 6 5 12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 6 14 14 H 1.48500 * 109.47093 * 60.00328 * 13 11 9 15 15 H 1.48495 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47239 * 300.00048 * 13 11 9 17 17 C 1.38261 * 120.09758 * 359.49762 * 5 4 3 18 18 C 1.38263 * 120.12584 * 0.24870 * 17 5 4 19 19 C 1.38335 * 120.02377 * 0.02562 * 18 17 5 20 20 F 1.35099 * 120.04251 * 180.02562 * 19 18 17 21 21 H 1.09003 * 109.47255 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47302 * 299.99921 * 1 2 3 23 23 H 1.09010 * 109.47066 * 59.99950 * 1 2 3 24 24 H 1.07995 * 120.02306 * 359.97438 * 4 3 2 25 25 H 1.08998 * 109.46887 * 180.02562 * 8 6 5 26 26 H 1.09005 * 109.47504 * 300.00247 * 8 6 5 27 27 H 1.09002 * 109.47168 * 60.00598 * 8 6 5 28 28 H 0.97000 * 119.99706 * 179.97438 * 12 11 9 29 29 H 1.07996 * 119.94111 * 180.23097 * 17 5 4 30 30 H 1.07996 * 119.98911 * 179.97438 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0059 5 6 1.9215 3.6052 0.0012 6 6 1.1018 4.8699 0.0023 7 1 0.0419 4.6157 0.0020 8 6 1.4296 5.6890 1.2522 9 6 1.4246 5.6788 -1.2275 10 1 2.1475 5.3117 -1.9411 11 6 0.7925 6.8848 -1.4449 12 7 -0.0917 7.3293 -0.5788 13 14 1.1932 7.8879 -2.9690 14 1 0.8760 7.0928 -4.1824 15 1 0.3854 9.1339 -2.9679 16 1 2.6371 8.2347 -2.9678 17 6 3.3022 3.6777 0.0011 18 6 4.0579 2.5199 0.0006 19 6 3.4333 1.2856 -0.0004 20 9 4.1713 0.1540 -0.0005 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8901 24 1 0.2137 2.3201 0.0100 25 1 0.8364 6.6034 1.2532 26 1 1.1961 5.1039 2.1417 27 1 2.4896 5.9432 1.2523 28 1 -0.5361 8.1779 -0.7316 29 1 3.7915 4.6405 0.0013 30 1 5.1363 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084353577.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:02 Heat of formation + Delta-G solvation = -70.465731 kcal Electronic energy + Delta-G solvation = -15089.708714 eV Core-core repulsion = 12378.527874 eV Total energy + Delta-G solvation = -2711.180840 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.29889 -39.59986 -37.36691 -34.15518 -31.36125 -29.85951 -28.44348 -26.70887 -25.19457 -22.62923 -22.03973 -19.98784 -17.57486 -16.80018 -16.27077 -15.86864 -15.73550 -14.82097 -14.68251 -14.10968 -13.94024 -13.60227 -12.87212 -12.42506 -12.02564 -11.83845 -11.62022 -11.33139 -11.09039 -10.96283 -10.79796 -10.60122 -10.23668 -10.15894 -9.55853 -9.09258 -8.44900 -8.23231 -7.54982 -6.08611 -4.16054 1.73351 1.84464 3.27435 3.32231 3.35234 3.45265 4.18200 4.39430 4.74383 5.14957 5.22703 5.28307 5.32931 5.57148 5.60882 5.77988 5.90188 6.01625 6.48037 6.63881 6.74400 6.79923 6.96697 7.07753 7.19973 7.22720 7.62330 7.71420 7.85095 8.00775 8.29241 8.86244 9.49119 10.96990 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.034383 B = 0.007512 C = 0.007065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.170611 B = 3726.708512 C = 3962.519454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.089 3.911 4 C -0.191 4.191 5 C -0.001 4.001 6 C 0.071 3.929 7 H 0.036 0.964 8 C -0.133 4.133 9 C -0.511 4.511 10 H 0.059 0.941 11 C 0.063 3.937 12 N -0.889 5.889 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.119 4.119 18 C -0.121 4.121 19 C 0.034 3.966 20 F -0.146 7.146 21 H 0.096 0.904 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.132 0.868 25 H 0.087 0.913 26 H 0.009 0.991 27 H 0.031 0.969 28 H 0.262 0.738 29 H 0.135 0.865 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -8.736 1.918 9.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.043 3.957 4 C -0.210 4.210 5 C -0.001 4.001 6 C 0.052 3.948 7 H 0.054 0.946 8 C -0.190 4.190 9 C -0.549 4.549 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.528 5.528 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.137 4.137 18 C -0.139 4.139 19 C 0.014 3.986 20 F -0.125 7.125 21 H 0.114 0.886 22 H 0.074 0.926 23 H 0.076 0.924 24 H 0.149 0.851 25 H 0.106 0.894 26 H 0.029 0.971 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.192 -8.815 1.951 9.290 hybrid contribution 0.026 0.510 -0.877 1.015 sum 2.218 -8.305 1.074 8.663 Atomic orbital electron populations 1.23035 0.78493 1.03386 1.01786 1.86046 1.21332 1.26532 1.89332 1.18970 0.90689 0.85238 1.00753 1.21151 1.00023 0.91091 1.08706 1.20607 0.94273 0.95777 0.89459 1.17931 0.94109 0.87474 0.95257 0.94634 1.21797 1.00248 1.02074 0.94928 1.21052 1.24169 1.04011 1.05653 0.92324 1.24956 0.94835 0.97485 0.96570 1.69869 1.26679 1.20911 1.35308 0.86617 0.78481 0.79395 0.83316 1.20231 1.21242 1.20149 1.20920 0.93708 0.97568 1.01547 1.20960 1.00337 0.90454 1.02200 1.16833 0.85817 0.82663 1.13259 1.91414 1.76614 1.49578 1.94931 0.88605 0.92564 0.92429 0.85066 0.89448 0.97150 0.95018 0.92782 0.84742 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.39 10.36 -19.61 -0.20 -5.59 16 3 C 0.09 1.64 6.69 -39.18 -0.26 1.38 16 4 C -0.19 -3.64 8.66 -39.45 -0.34 -3.98 16 5 C 0.00 -0.02 4.74 -104.63 -0.50 -0.51 16 6 C 0.07 1.69 2.48 -92.93 -0.23 1.46 16 7 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16 8 C -0.13 -3.06 8.78 37.15 0.33 -2.73 16 9 C -0.51 -13.37 8.24 -34.44 -0.28 -13.65 16 10 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 11 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 12 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 13 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 C -0.12 -2.29 8.70 -39.56 -0.34 -2.63 16 18 C -0.12 -2.09 10.02 -39.54 -0.40 -2.49 16 19 C 0.03 0.63 7.31 -39.30 -0.29 0.34 16 20 F -0.15 -2.68 17.11 2.25 0.04 -2.65 16 21 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 23 H 0.06 0.70 7.68 -51.92 -0.40 0.30 16 24 H 0.13 2.29 6.19 -52.49 -0.32 1.97 16 25 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.03 0.69 7.38 -51.93 -0.38 0.30 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.13 2.53 7.57 -52.49 -0.40 2.13 16 30 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 261.05 15.07 3.93 3.93 Total: -1.00 -28.14 261.05 -5.47 -33.61 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -3.43 Total: -1.28 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -1.42 Total: -19.89 kcal Atomic # 7 Polarization: -24.38 SS G_CDS: 0.63 Total: -23.75 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.59 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -28.14 -5.47 -33.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084353577.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.855 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds