Wall clock time and date at job start Mon Mar 30 2020 03:00:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.35958 * 117.00103 * 2 1
4 4 C 1.38662 * 120.05818 * 0.28002 * 3 2 1
5 5 C 1.38179 * 119.96578 * 180.22355 * 4 3 2
6 6 C 1.50707 * 119.95505 * 179.76818 * 5 4 3
7 7 H 1.08997 * 109.46649 * 359.72398 * 6 5 4
8 8 C 1.52994 * 109.47019 * 119.72585 * 6 5 4
9 9 C 1.50695 * 109.47014 * 239.72855 * 6 5 4
10 10 H 1.08004 * 120.00546 * 0.27454 * 9 6 5
11 11 C 1.37885 * 119.99721 * 179.97438 * 9 6 5
12 12 N 1.31514 * 120.00035 * 0.02562 * 11 9 6
13 13 Si 1.86803 * 119.99853 * 179.97438 * 11 9 6
14 14 H 1.48500 * 109.47093 * 60.00328 * 13 11 9
15 15 H 1.48495 * 109.47002 * 180.02562 * 13 11 9
16 16 H 1.48503 * 109.47239 * 300.00048 * 13 11 9
17 17 C 1.38261 * 120.09758 * 359.49762 * 5 4 3
18 18 C 1.38263 * 120.12584 * 0.24870 * 17 5 4
19 19 C 1.38335 * 120.02377 * 0.02562 * 18 17 5
20 20 F 1.35099 * 120.04251 * 180.02562 * 19 18 17
21 21 H 1.09003 * 109.47255 * 179.97438 * 1 2 3
22 22 H 1.09004 * 109.47302 * 299.99921 * 1 2 3
23 23 H 1.09010 * 109.47066 * 59.99950 * 1 2 3
24 24 H 1.07995 * 120.02306 * 359.97438 * 4 3 2
25 25 H 1.08998 * 109.46887 * 180.02562 * 8 6 5
26 26 H 1.09005 * 109.47504 * 300.00247 * 8 6 5
27 27 H 1.09002 * 109.47168 * 60.00598 * 8 6 5
28 28 H 0.97000 * 119.99706 * 179.97438 * 12 11 9
29 29 H 1.07996 * 119.94111 * 180.23097 * 17 5 4
30 30 H 1.07996 * 119.98911 * 179.97438 * 18 17 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0462 1.2114 0.0000
4 6 1.2922 2.3751 0.0059
5 6 1.9215 3.6052 0.0012
6 6 1.1018 4.8699 0.0023
7 1 0.0419 4.6157 0.0020
8 6 1.4296 5.6890 1.2522
9 6 1.4246 5.6788 -1.2275
10 1 2.1475 5.3117 -1.9411
11 6 0.7925 6.8848 -1.4449
12 7 -0.0917 7.3293 -0.5788
13 14 1.1932 7.8879 -2.9690
14 1 0.8760 7.0928 -4.1824
15 1 0.3854 9.1339 -2.9679
16 1 2.6371 8.2347 -2.9678
17 6 3.3022 3.6777 0.0011
18 6 4.0579 2.5199 0.0006
19 6 3.4333 1.2856 -0.0004
20 9 4.1713 0.1540 -0.0005
21 1 -0.3634 -1.0277 -0.0005
22 1 -0.3634 0.5138 0.8900
23 1 -0.3634 0.5139 -0.8901
24 1 0.2137 2.3201 0.0100
25 1 0.8364 6.6034 1.2532
26 1 1.1961 5.1039 2.1417
27 1 2.4896 5.9432 1.2523
28 1 -0.5361 8.1779 -0.7316
29 1 3.7915 4.6405 0.0013
30 1 5.1363 2.5791 0.0002
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000084353577.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:02
Heat of formation + Delta-G solvation = -70.465731 kcal
Electronic energy + Delta-G solvation = -15089.708714 eV
Core-core repulsion = 12378.527874 eV
Total energy + Delta-G solvation = -2711.180840 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-48.29889 -39.59986 -37.36691 -34.15518 -31.36125 -29.85951 -28.44348 -26.70887
-25.19457 -22.62923 -22.03973 -19.98784 -17.57486 -16.80018 -16.27077 -15.86864
-15.73550 -14.82097 -14.68251 -14.10968 -13.94024 -13.60227 -12.87212 -12.42506
-12.02564 -11.83845 -11.62022 -11.33139 -11.09039 -10.96283 -10.79796 -10.60122
-10.23668 -10.15894 -9.55853 -9.09258 -8.44900 -8.23231 -7.54982 -6.08611
-4.16054 1.73351 1.84464 3.27435 3.32231 3.35234 3.45265 4.18200
4.39430 4.74383 5.14957 5.22703 5.28307 5.32931 5.57148 5.60882
5.77988 5.90188 6.01625 6.48037 6.63881 6.74400 6.79923 6.96697
7.07753 7.19973 7.22720 7.62330 7.71420 7.85095 8.00775 8.29241
8.86244 9.49119 10.96990
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.034383 B = 0.007512 C = 0.007065
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.170611 B = 3726.708512 C = 3962.519454
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.318 6.318
3 C 0.089 3.911
4 C -0.191 4.191
5 C -0.001 4.001
6 C 0.071 3.929
7 H 0.036 0.964
8 C -0.133 4.133
9 C -0.511 4.511
10 H 0.059 0.941
11 C 0.063 3.937
12 N -0.889 5.889
13 Si 0.894 3.106
14 H -0.277 1.277
15 H -0.287 1.287
16 H -0.276 1.276
17 C -0.119 4.119
18 C -0.121 4.121
19 C 0.034 3.966
20 F -0.146 7.146
21 H 0.096 0.904
22 H 0.056 0.944
23 H 0.057 0.943
24 H 0.132 0.868
25 H 0.087 0.913
26 H 0.009 0.991
27 H 0.031 0.969
28 H 0.262 0.738
29 H 0.135 0.865
30 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.216 -8.736 1.918 9.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.043 3.957
4 C -0.210 4.210
5 C -0.001 4.001
6 C 0.052 3.948
7 H 0.054 0.946
8 C -0.190 4.190
9 C -0.549 4.549
10 H 0.077 0.923
11 C -0.138 4.138
12 N -0.528 5.528
13 Si 0.722 3.278
14 H -0.202 1.202
15 H -0.212 1.212
16 H -0.201 1.201
17 C -0.137 4.137
18 C -0.139 4.139
19 C 0.014 3.986
20 F -0.125 7.125
21 H 0.114 0.886
22 H 0.074 0.926
23 H 0.076 0.924
24 H 0.149 0.851
25 H 0.106 0.894
26 H 0.029 0.971
27 H 0.050 0.950
28 H 0.072 0.928
29 H 0.153 0.847
30 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 2.192 -8.815 1.951 9.290
hybrid contribution 0.026 0.510 -0.877 1.015
sum 2.218 -8.305 1.074 8.663
Atomic orbital electron populations
1.23035 0.78493 1.03386 1.01786 1.86046 1.21332 1.26532 1.89332
1.18970 0.90689 0.85238 1.00753 1.21151 1.00023 0.91091 1.08706
1.20607 0.94273 0.95777 0.89459 1.17931 0.94109 0.87474 0.95257
0.94634 1.21797 1.00248 1.02074 0.94928 1.21052 1.24169 1.04011
1.05653 0.92324 1.24956 0.94835 0.97485 0.96570 1.69869 1.26679
1.20911 1.35308 0.86617 0.78481 0.79395 0.83316 1.20231 1.21242
1.20149 1.20920 0.93708 0.97568 1.01547 1.20960 1.00337 0.90454
1.02200 1.16833 0.85817 0.82663 1.13259 1.91414 1.76614 1.49578
1.94931 0.88605 0.92564 0.92429 0.85066 0.89448 0.97150 0.95018
0.92782 0.84742 0.85009
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.35 9.81 101.05 0.99 1.34 16
2 O -0.32 -5.39 10.36 -19.61 -0.20 -5.59 16
3 C 0.09 1.64 6.69 -39.18 -0.26 1.38 16
4 C -0.19 -3.64 8.66 -39.45 -0.34 -3.98 16
5 C 0.00 -0.02 4.74 -104.63 -0.50 -0.51 16
6 C 0.07 1.69 2.48 -92.93 -0.23 1.46 16
7 H 0.04 0.91 7.87 -51.93 -0.41 0.50 16
8 C -0.13 -3.06 8.78 37.15 0.33 -2.73 16
9 C -0.51 -13.37 8.24 -34.44 -0.28 -13.65 16
10 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16
11 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16
12 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16
13 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16
14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
17 C -0.12 -2.29 8.70 -39.56 -0.34 -2.63 16
18 C -0.12 -2.09 10.02 -39.54 -0.40 -2.49 16
19 C 0.03 0.63 7.31 -39.30 -0.29 0.34 16
20 F -0.15 -2.68 17.11 2.25 0.04 -2.65 16
21 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16
22 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16
23 H 0.06 0.70 7.68 -51.92 -0.40 0.30 16
24 H 0.13 2.29 6.19 -52.49 -0.32 1.97 16
25 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16
26 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16
27 H 0.03 0.69 7.38 -51.93 -0.38 0.30 16
28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
29 H 0.13 2.53 7.57 -52.49 -0.40 2.13 16
30 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16
LS Contribution 261.05 15.07 3.93 3.93
Total: -1.00 -28.14 261.05 -5.47 -33.61
By element:
Atomic # 1 Polarization: 2.14 SS G_CDS: -3.43 Total: -1.28 kcal
Atomic # 6 Polarization: -18.47 SS G_CDS: -1.42 Total: -19.89 kcal
Atomic # 7 Polarization: -24.38 SS G_CDS: 0.63 Total: -23.75 kcal
Atomic # 8 Polarization: -5.39 SS G_CDS: -0.20 Total: -5.59 kcal
Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.65 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -28.14 -5.47 -33.61 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084353577.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.855 kcal
(2) G-P(sol) polarization free energy of solvation -28.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.611 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.466 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds