Wall clock time and date at job start Mon Mar 30 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35960 * 116.99585 * 2 1 4 4 C 1.38946 * 120.06099 * 270.01986 * 3 2 1 5 5 F 1.35099 * 120.04946 * 0.02562 * 4 3 2 6 6 C 1.38295 * 119.90134 * 179.97438 * 4 3 2 7 7 C 1.38301 * 120.02977 * 359.97438 * 6 4 3 8 8 C 1.38214 * 120.12819 * 359.79438 * 7 6 4 9 9 C 1.38229 * 120.09065 * 0.45717 * 8 7 6 10 10 C 1.50707 * 120.01088 * 179.79208 * 9 8 7 11 11 H 1.08994 * 109.46920 * 179.72569 * 10 9 8 12 12 C 1.53005 * 109.47222 * 299.72489 * 10 9 8 13 13 C 1.50697 * 109.47081 * 59.72647 * 10 9 8 14 14 H 1.08004 * 120.00038 * 354.35779 * 13 10 9 15 15 C 1.37880 * 120.00093 * 174.35923 * 13 10 9 16 16 N 1.31511 * 120.00032 * 156.99608 * 15 13 10 17 17 Si 1.86796 * 119.99812 * 336.99361 * 15 13 10 18 18 H 1.48504 * 109.47258 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47166 * 60.00014 * 17 15 13 20 20 H 1.48507 * 109.47277 * 300.00231 * 17 15 13 21 21 H 1.08996 * 109.46856 * 299.99828 * 1 2 3 22 22 H 1.08994 * 109.47186 * 60.00187 * 1 2 3 23 23 H 1.09003 * 109.46311 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.97948 * 180.02562 * 6 4 3 25 25 H 1.08000 * 119.93423 * 180.02562 * 7 6 4 26 26 H 1.08001 * 119.95480 * 180.22901 * 8 7 6 27 27 H 1.09000 * 109.46720 * 53.28972 * 12 10 9 28 28 H 1.08995 * 109.46944 * 173.28693 * 12 10 9 29 29 H 1.08997 * 109.46852 * 293.29100 * 12 10 9 30 30 H 0.97000 * 119.99790 * 354.92638 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 2.3618 1.8318 -1.2026 5 9 2.0554 1.2324 -2.3739 6 6 2.9891 3.0643 -1.1987 7 6 3.3012 3.6784 0.0006 8 6 2.9835 3.0646 1.1975 9 6 2.3612 1.8303 1.1997 10 6 2.0199 1.1605 2.5059 11 1 1.5334 0.2054 2.3082 12 6 3.3013 0.9238 3.3078 13 6 1.0892 2.0444 3.2955 14 1 0.8483 3.0335 2.9349 15 6 0.5452 1.5903 4.4783 16 7 0.1242 2.4492 5.3809 17 14 0.4061 -0.2447 4.7986 18 1 -0.2091 -0.4694 6.1314 19 1 1.7588 -0.8565 4.7677 20 1 -0.4427 -0.8672 3.7509 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 3.2346 3.5478 -2.1327 25 1 3.7907 4.6411 0.0018 26 1 3.2252 3.5483 2.1324 27 1 3.8486 1.8616 3.4032 28 1 3.0456 0.5499 4.2992 29 1 3.9224 0.1914 2.7923 30 1 0.2629 3.3999 5.2476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084353581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:07 Heat of formation + Delta-G solvation = -68.729811 kcal Electronic energy + Delta-G solvation = -15560.310056 eV Core-core repulsion = 12849.204491 eV Total energy + Delta-G solvation = -2711.105565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.52501 -39.47529 -36.88733 -34.48312 -31.74625 -29.63056 -28.74235 -26.40744 -24.78966 -22.94488 -21.93682 -19.74024 -17.60245 -17.41651 -16.35837 -16.25175 -15.62932 -14.65877 -14.40336 -14.22181 -13.91152 -13.50097 -12.84366 -12.61642 -12.21252 -11.93833 -11.77306 -11.53050 -11.27704 -10.96442 -10.58053 -10.46814 -9.90264 -9.80377 -9.42541 -9.07752 -8.30853 -8.18539 -8.11733 -6.51807 -4.13350 1.47213 1.66504 3.37951 3.42035 3.59267 3.78358 4.31933 4.45980 4.60934 5.10262 5.15412 5.42066 5.62171 5.64747 5.74878 5.81943 5.99149 6.13715 6.29617 6.39987 6.46924 6.60696 6.70630 6.82866 6.86219 7.11070 7.21978 7.47209 7.91161 8.03114 8.31290 8.82721 9.51319 10.83908 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.010395 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.915235 B = 2692.933563 C = 3152.879031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.328 6.328 3 C 0.048 3.952 4 C 0.073 3.927 5 F -0.143 7.143 6 C -0.170 4.170 7 C -0.101 4.101 8 C -0.109 4.109 9 C -0.014 4.014 10 C 0.045 3.955 11 H 0.039 0.961 12 C -0.139 4.139 13 C -0.602 4.602 14 H 0.059 0.941 15 C 0.041 3.959 16 N -0.896 5.896 17 Si 1.033 2.967 18 H -0.285 1.285 19 H -0.275 1.275 20 H -0.282 1.282 21 H 0.063 0.937 22 H 0.038 0.962 23 H 0.090 0.910 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.025 0.975 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.162 -0.980 -9.762 10.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.244 6.244 3 C 0.003 3.997 4 C 0.053 3.947 5 F -0.122 7.122 6 C -0.189 4.189 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.015 4.015 10 C 0.026 3.974 11 H 0.057 0.943 12 C -0.196 4.196 13 C -0.639 4.639 14 H 0.077 0.923 15 C -0.165 4.165 16 N -0.528 5.528 17 Si 0.860 3.140 18 H -0.211 1.211 19 H -0.201 1.201 20 H -0.209 1.209 21 H 0.081 0.919 22 H 0.057 0.943 23 H 0.108 0.892 24 H 0.147 0.853 25 H 0.145 0.855 26 H 0.152 0.848 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.641 -2.286 -8.706 9.709 hybrid contribution 0.294 1.296 -1.412 1.939 sum 3.935 -0.990 -10.118 10.901 Atomic orbital electron populations 1.23048 0.79047 1.02918 1.01239 1.85997 1.20007 1.24244 1.94182 1.18613 1.01841 0.88312 0.90929 1.18095 1.03034 0.93005 0.80538 1.91429 1.91435 1.83455 1.45839 1.20840 1.03878 0.94600 0.99543 1.20987 0.99611 0.99718 0.91634 1.21090 0.98666 0.94753 0.98198 1.20612 0.92395 0.93238 0.95263 1.18164 0.94589 0.96600 0.88009 0.94273 1.22142 0.97871 0.99441 1.00168 1.21862 1.31656 1.02325 1.08074 0.92253 1.25675 0.93199 1.05946 0.91711 1.70857 1.44917 1.04172 1.32892 0.84197 0.77376 0.76036 0.76365 1.21116 1.20091 1.20855 0.91856 0.94291 0.89189 0.85316 0.85524 0.84833 0.93632 0.92670 0.95594 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.88 101.05 1.10 1.65 16 2 O -0.33 -6.66 9.13 -19.62 -0.18 -6.84 16 3 C 0.05 0.97 5.70 -39.18 -0.22 0.74 16 4 C 0.07 1.34 7.31 -39.30 -0.29 1.05 16 5 F -0.14 -2.57 17.11 2.25 0.04 -2.53 16 6 C -0.17 -2.67 10.02 -39.54 -0.40 -3.07 16 7 C -0.10 -1.58 10.04 -39.57 -0.40 -1.98 16 8 C -0.11 -2.04 8.56 -39.59 -0.34 -2.38 16 9 C -0.01 -0.31 4.76 -104.48 -0.50 -0.80 16 10 C 0.05 1.06 2.04 -92.92 -0.19 0.87 16 11 H 0.04 0.95 5.32 -51.93 -0.28 0.67 16 12 C -0.14 -3.02 8.83 37.16 0.33 -2.69 16 13 C -0.60 -16.07 8.48 -34.44 -0.29 -16.37 16 14 H 0.06 1.70 7.77 -52.48 -0.41 1.30 16 15 C 0.04 1.14 5.20 -17.82 -0.09 1.05 16 16 N -0.90 -26.43 13.70 55.43 0.76 -25.67 16 17 Si 1.03 24.51 26.44 -169.99 -4.49 20.01 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.12 6.14 56.52 0.35 -5.78 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 24 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 25 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 26 H 0.13 2.50 7.55 -52.49 -0.40 2.10 16 27 H 0.04 0.93 7.19 -51.93 -0.37 0.56 16 28 H 0.05 1.24 5.46 -51.93 -0.28 0.96 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 LS Contribution 259.20 15.07 3.91 3.91 Total: -1.00 -29.08 259.20 -4.73 -33.81 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -3.48 Total: -0.76 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.29 Total: -21.92 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.76 Total: -25.67 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -0.18 Total: -6.84 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.53 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.49 Total: 20.01 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.08 -4.73 -33.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084353581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.916 kcal (2) G-P(sol) polarization free energy of solvation -29.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds