Wall clock time and date at job start Mon Mar 30 2020 03:00:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42909 * 1
3 3 C 1.35960 * 116.99585 * 2 1
4 4 C 1.38946 * 120.06099 * 270.01986 * 3 2 1
5 5 F 1.35099 * 120.04946 * 0.02562 * 4 3 2
6 6 C 1.38295 * 119.90134 * 179.97438 * 4 3 2
7 7 C 1.38301 * 120.02977 * 359.97438 * 6 4 3
8 8 C 1.38214 * 120.12819 * 359.79438 * 7 6 4
9 9 C 1.38229 * 120.09065 * 0.45717 * 8 7 6
10 10 C 1.50707 * 120.01088 * 179.79208 * 9 8 7
11 11 H 1.08994 * 109.46920 * 179.72569 * 10 9 8
12 12 C 1.53005 * 109.47222 * 299.72489 * 10 9 8
13 13 C 1.50697 * 109.47081 * 59.72647 * 10 9 8
14 14 H 1.08004 * 120.00038 * 354.35779 * 13 10 9
15 15 C 1.37880 * 120.00093 * 174.35923 * 13 10 9
16 16 N 1.31511 * 120.00032 * 156.99608 * 15 13 10
17 17 Si 1.86796 * 119.99812 * 336.99361 * 15 13 10
18 18 H 1.48504 * 109.47258 * 180.02562 * 17 15 13
19 19 H 1.48497 * 109.47166 * 60.00014 * 17 15 13
20 20 H 1.48507 * 109.47277 * 300.00231 * 17 15 13
21 21 H 1.08996 * 109.46856 * 299.99828 * 1 2 3
22 22 H 1.08994 * 109.47186 * 60.00187 * 1 2 3
23 23 H 1.09003 * 109.46311 * 180.02562 * 1 2 3
24 24 H 1.07999 * 119.97948 * 180.02562 * 6 4 3
25 25 H 1.08000 * 119.93423 * 180.02562 * 7 6 4
26 26 H 1.08001 * 119.95480 * 180.22901 * 8 7 6
27 27 H 1.09000 * 109.46720 * 53.28972 * 12 10 9
28 28 H 1.08995 * 109.46944 * 173.28693 * 12 10 9
29 29 H 1.08997 * 109.46852 * 293.29100 * 12 10 9
30 30 H 0.97000 * 119.99790 * 354.92638 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0462 1.2115 0.0000
4 6 2.3618 1.8318 -1.2026
5 9 2.0554 1.2324 -2.3739
6 6 2.9891 3.0643 -1.1987
7 6 3.3012 3.6784 0.0006
8 6 2.9835 3.0646 1.1975
9 6 2.3612 1.8303 1.1997
10 6 2.0199 1.1605 2.5059
11 1 1.5334 0.2054 2.3082
12 6 3.3013 0.9238 3.3078
13 6 1.0892 2.0444 3.2955
14 1 0.8483 3.0335 2.9349
15 6 0.5452 1.5903 4.4783
16 7 0.1242 2.4492 5.3809
17 14 0.4061 -0.2447 4.7986
18 1 -0.2091 -0.4694 6.1314
19 1 1.7588 -0.8565 4.7677
20 1 -0.4427 -0.8672 3.7509
21 1 -0.3633 0.5138 0.8900
22 1 -0.3633 0.5138 -0.8899
23 1 -0.3632 -1.0277 0.0005
24 1 3.2346 3.5478 -2.1327
25 1 3.7907 4.6411 0.0018
26 1 3.2252 3.5483 2.1324
27 1 3.8486 1.8616 3.4032
28 1 3.0456 0.5499 4.2992
29 1 3.9224 0.1914 2.7923
30 1 0.2629 3.3999 5.2476
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000084353581.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:00:07
Heat of formation + Delta-G solvation = -86.031393 kcal
Electronic energy + Delta-G solvation = -15561.060309 eV
Core-core repulsion = 12849.204491 eV
Total energy + Delta-G solvation = -2711.855818 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-49.91341 -40.94414 -38.32953 -36.30100 -33.70560 -31.02910 -30.29135 -27.81799
-26.75327 -24.54986 -23.35482 -21.46137 -19.58420 -18.86953 -17.87784 -17.71429
-17.05511 -16.07604 -15.98645 -15.66324 -15.46646 -15.24688 -14.59667 -14.31120
-13.85273 -13.42726 -13.32943 -13.10227 -12.84734 -12.47619 -12.33178 -12.18308
-11.67899 -11.62106 -11.11274 -10.90930 -10.38646 -9.65820 -9.59351 -8.69317
-6.31867 0.07024 0.25975 1.47794 1.50790 1.71649 2.39511 2.48660
2.89847 3.02550 3.20597 3.80707 4.06028 4.26204 4.32720 4.38874
4.46236 4.51656 4.61444 4.73966 4.82578 4.91578 5.08260 5.16732
5.21219 5.29668 5.51674 5.72817 5.76339 6.03429 6.10025 6.45794
6.61195 7.39335 8.63793
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.032478 B = 0.010395 C = 0.008879
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 861.915235 B = 2692.933563 C = 3152.879031
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.344 6.344
3 C 0.030 3.970
4 C 0.063 3.937
5 F -0.142 7.142
6 C -0.151 4.151
7 C -0.086 4.086
8 C -0.121 4.121
9 C -0.047 4.047
10 C 0.046 3.954
11 H 0.032 0.968
12 C -0.135 4.135
13 C -0.593 4.593
14 H 0.026 0.974
15 C -0.005 4.005
16 N -0.930 5.930
17 Si 1.065 2.935
18 H -0.289 1.289
19 H -0.251 1.251
20 H -0.266 1.266
21 H 0.037 0.963
22 H 0.052 0.948
23 H 0.118 0.882
24 H 0.169 0.831
25 H 0.169 0.831
26 H 0.125 0.875
27 H 0.050 0.950
28 H 0.043 0.957
29 H 0.046 0.954
30 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.322 -1.258 -11.655 12.874
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.261 6.261
3 C -0.014 4.014
4 C 0.043 3.957
5 F -0.121 7.121
6 C -0.169 4.169
7 C -0.103 4.103
8 C -0.139 4.139
9 C -0.048 4.048
10 C 0.027 3.973
11 H 0.050 0.950
12 C -0.192 4.192
13 C -0.630 4.630
14 H 0.045 0.955
15 C -0.205 4.205
16 N -0.565 5.565
17 Si 0.888 3.112
18 H -0.215 1.215
19 H -0.175 1.175
20 H -0.191 1.191
21 H 0.055 0.945
22 H 0.070 0.930
23 H 0.137 0.863
24 H 0.187 0.813
25 H 0.187 0.813
26 H 0.143 0.857
27 H 0.069 0.931
28 H 0.062 0.938
29 H 0.065 0.935
30 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 4.813 -2.562 -10.622 11.940
hybrid contribution -0.052 1.486 -0.939 1.759
sum 4.761 -1.076 -11.562 12.550
Atomic orbital electron populations
1.23174 0.77971 1.04642 1.00565 1.85958 1.21177 1.24699 1.94273
1.18770 1.02494 0.88645 0.91541 1.18252 1.03615 0.93890 0.79922
1.91431 1.91509 1.83638 1.45481 1.21300 1.01286 0.93144 1.01216
1.21379 0.98056 1.00765 0.90129 1.21174 0.99032 0.94210 0.99476
1.20481 0.95079 0.94698 0.94516 1.18025 0.94384 0.95609 0.89278
0.95014 1.22048 0.97446 1.00327 0.99427 1.21956 1.31650 1.01327
1.08078 0.95525 1.26857 0.92802 1.09012 0.91834 1.70968 1.47536
1.03670 1.34297 0.83778 0.78927 0.72094 0.76442 1.21507 1.17534
1.19123 0.94453 0.92979 0.86344 0.81341 0.81306 0.85660 0.93126
0.93786 0.93503 0.93443
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.03 10.88 113.37 1.23 2.26 16
2 O -0.34 -13.69 9.13 -93.11 -0.85 -14.54 16
3 C 0.03 1.18 5.70 22.53 0.13 1.31 16
4 C 0.06 2.14 7.31 22.45 0.16 2.31 16
5 F -0.14 -4.74 17.11 44.97 0.77 -3.97 16
6 C -0.15 -4.13 10.02 22.30 0.22 -3.91 16
7 C -0.09 -2.36 10.04 22.28 0.22 -2.14 16
8 C -0.12 -4.37 8.56 22.26 0.19 -4.18 16
9 C -0.05 -1.97 4.76 -19.77 -0.09 -2.06 16
10 C 0.05 2.16 2.04 -12.28 -0.03 2.13 16
11 H 0.03 1.53 5.32 -2.39 -0.01 1.51 16
12 C -0.13 -5.76 8.83 71.98 0.64 -5.13 16
13 C -0.59 -32.42 8.48 25.60 0.22 -32.21 16
14 H 0.03 1.59 7.77 -2.91 -0.02 1.57 16
15 C -0.01 -0.28 5.20 84.66 0.44 0.16 16
16 N -0.93 -56.56 13.70 21.45 0.29 -56.26 16
17 Si 1.07 49.38 26.44 68.60 1.81 51.19 16
18 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16
19 H -0.25 -10.59 6.14 99.48 0.61 -9.98 16
20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16
21 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16
22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
23 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16
24 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16
25 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16
26 H 0.13 4.66 7.55 -2.91 -0.02 4.64 16
27 H 0.05 2.05 7.19 -2.39 -0.02 2.04 16
28 H 0.04 1.94 5.46 -2.39 -0.01 1.92 16
29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16
30 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16
Total: -1.00 -63.94 259.20 6.37 -57.57
By element:
Atomic # 1 Polarization: 6.45 SS G_CDS: 1.00 Total: 7.45 kcal
Atomic # 6 Polarization: -44.79 SS G_CDS: 3.34 Total: -41.45 kcal
Atomic # 7 Polarization: -56.56 SS G_CDS: 0.29 Total: -56.26 kcal
Atomic # 8 Polarization: -13.69 SS G_CDS: -0.85 Total: -14.54 kcal
Atomic # 9 Polarization: -4.74 SS G_CDS: 0.77 Total: -3.97 kcal
Atomic # 14 Polarization: 49.38 SS G_CDS: 1.81 Total: 51.19 kcal
Total: -63.94 6.37 -57.57 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000084353581.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.458 kcal
(2) G-P(sol) polarization free energy of solvation -63.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.399 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.574 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds