Wall clock time and date at job start Mon Mar 30 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35960 * 116.99585 * 2 1 4 4 C 1.38946 * 120.06099 * 270.01986 * 3 2 1 5 5 F 1.35099 * 120.04946 * 0.02562 * 4 3 2 6 6 C 1.38295 * 119.90134 * 179.97438 * 4 3 2 7 7 C 1.38301 * 120.02977 * 359.97438 * 6 4 3 8 8 C 1.38214 * 120.12819 * 359.79438 * 7 6 4 9 9 C 1.38229 * 120.09065 * 0.45717 * 8 7 6 10 10 C 1.50707 * 120.01088 * 179.79208 * 9 8 7 11 11 H 1.08994 * 109.46920 * 179.72569 * 10 9 8 12 12 C 1.53005 * 109.47222 * 299.72489 * 10 9 8 13 13 C 1.50697 * 109.47081 * 59.72647 * 10 9 8 14 14 H 1.08004 * 120.00038 * 354.35779 * 13 10 9 15 15 C 1.37880 * 120.00093 * 174.35923 * 13 10 9 16 16 N 1.31511 * 120.00032 * 156.99608 * 15 13 10 17 17 Si 1.86796 * 119.99812 * 336.99361 * 15 13 10 18 18 H 1.48504 * 109.47258 * 180.02562 * 17 15 13 19 19 H 1.48497 * 109.47166 * 60.00014 * 17 15 13 20 20 H 1.48507 * 109.47277 * 300.00231 * 17 15 13 21 21 H 1.08996 * 109.46856 * 299.99828 * 1 2 3 22 22 H 1.08994 * 109.47186 * 60.00187 * 1 2 3 23 23 H 1.09003 * 109.46311 * 180.02562 * 1 2 3 24 24 H 1.07999 * 119.97948 * 180.02562 * 6 4 3 25 25 H 1.08000 * 119.93423 * 180.02562 * 7 6 4 26 26 H 1.08001 * 119.95480 * 180.22901 * 8 7 6 27 27 H 1.09000 * 109.46720 * 53.28972 * 12 10 9 28 28 H 1.08995 * 109.46944 * 173.28693 * 12 10 9 29 29 H 1.08997 * 109.46852 * 293.29100 * 12 10 9 30 30 H 0.97000 * 119.99790 * 354.92638 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 2.3618 1.8318 -1.2026 5 9 2.0554 1.2324 -2.3739 6 6 2.9891 3.0643 -1.1987 7 6 3.3012 3.6784 0.0006 8 6 2.9835 3.0646 1.1975 9 6 2.3612 1.8303 1.1997 10 6 2.0199 1.1605 2.5059 11 1 1.5334 0.2054 2.3082 12 6 3.3013 0.9238 3.3078 13 6 1.0892 2.0444 3.2955 14 1 0.8483 3.0335 2.9349 15 6 0.5452 1.5903 4.4783 16 7 0.1242 2.4492 5.3809 17 14 0.4061 -0.2447 4.7986 18 1 -0.2091 -0.4694 6.1314 19 1 1.7588 -0.8565 4.7677 20 1 -0.4427 -0.8672 3.7509 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 3.2346 3.5478 -2.1327 25 1 3.7907 4.6411 0.0018 26 1 3.2252 3.5483 2.1324 27 1 3.8486 1.8616 3.4032 28 1 3.0456 0.5499 4.2992 29 1 3.9224 0.1914 2.7923 30 1 0.2629 3.3999 5.2476 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084353581.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:07 Heat of formation + Delta-G solvation = -86.031393 kcal Electronic energy + Delta-G solvation = -15561.060309 eV Core-core repulsion = 12849.204491 eV Total energy + Delta-G solvation = -2711.855818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.91341 -40.94414 -38.32953 -36.30100 -33.70560 -31.02910 -30.29135 -27.81799 -26.75327 -24.54986 -23.35482 -21.46137 -19.58420 -18.86953 -17.87784 -17.71429 -17.05511 -16.07604 -15.98645 -15.66324 -15.46646 -15.24688 -14.59667 -14.31120 -13.85273 -13.42726 -13.32943 -13.10227 -12.84734 -12.47619 -12.33178 -12.18308 -11.67899 -11.62106 -11.11274 -10.90930 -10.38646 -9.65820 -9.59351 -8.69317 -6.31867 0.07024 0.25975 1.47794 1.50790 1.71649 2.39511 2.48660 2.89847 3.02550 3.20597 3.80707 4.06028 4.26204 4.32720 4.38874 4.46236 4.51656 4.61444 4.73966 4.82578 4.91578 5.08260 5.16732 5.21219 5.29668 5.51674 5.72817 5.76339 6.03429 6.10025 6.45794 6.61195 7.39335 8.63793 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.032478 B = 0.010395 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.915235 B = 2692.933563 C = 3152.879031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.344 6.344 3 C 0.030 3.970 4 C 0.063 3.937 5 F -0.142 7.142 6 C -0.151 4.151 7 C -0.086 4.086 8 C -0.121 4.121 9 C -0.047 4.047 10 C 0.046 3.954 11 H 0.032 0.968 12 C -0.135 4.135 13 C -0.593 4.593 14 H 0.026 0.974 15 C -0.005 4.005 16 N -0.930 5.930 17 Si 1.065 2.935 18 H -0.289 1.289 19 H -0.251 1.251 20 H -0.266 1.266 21 H 0.037 0.963 22 H 0.052 0.948 23 H 0.118 0.882 24 H 0.169 0.831 25 H 0.169 0.831 26 H 0.125 0.875 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.046 0.954 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 -1.258 -11.655 12.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.261 6.261 3 C -0.014 4.014 4 C 0.043 3.957 5 F -0.121 7.121 6 C -0.169 4.169 7 C -0.103 4.103 8 C -0.139 4.139 9 C -0.048 4.048 10 C 0.027 3.973 11 H 0.050 0.950 12 C -0.192 4.192 13 C -0.630 4.630 14 H 0.045 0.955 15 C -0.205 4.205 16 N -0.565 5.565 17 Si 0.888 3.112 18 H -0.215 1.215 19 H -0.175 1.175 20 H -0.191 1.191 21 H 0.055 0.945 22 H 0.070 0.930 23 H 0.137 0.863 24 H 0.187 0.813 25 H 0.187 0.813 26 H 0.143 0.857 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.813 -2.562 -10.622 11.940 hybrid contribution -0.052 1.486 -0.939 1.759 sum 4.761 -1.076 -11.562 12.550 Atomic orbital electron populations 1.23174 0.77971 1.04642 1.00565 1.85958 1.21177 1.24699 1.94273 1.18770 1.02494 0.88645 0.91541 1.18252 1.03615 0.93890 0.79922 1.91431 1.91509 1.83638 1.45481 1.21300 1.01286 0.93144 1.01216 1.21379 0.98056 1.00765 0.90129 1.21174 0.99032 0.94210 0.99476 1.20481 0.95079 0.94698 0.94516 1.18025 0.94384 0.95609 0.89278 0.95014 1.22048 0.97446 1.00327 0.99427 1.21956 1.31650 1.01327 1.08078 0.95525 1.26857 0.92802 1.09012 0.91834 1.70968 1.47536 1.03670 1.34297 0.83778 0.78927 0.72094 0.76442 1.21507 1.17534 1.19123 0.94453 0.92979 0.86344 0.81341 0.81306 0.85660 0.93126 0.93786 0.93503 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 10.88 113.37 1.23 2.26 16 2 O -0.34 -13.69 9.13 -93.11 -0.85 -14.54 16 3 C 0.03 1.18 5.70 22.53 0.13 1.31 16 4 C 0.06 2.14 7.31 22.45 0.16 2.31 16 5 F -0.14 -4.74 17.11 44.97 0.77 -3.97 16 6 C -0.15 -4.13 10.02 22.30 0.22 -3.91 16 7 C -0.09 -2.36 10.04 22.28 0.22 -2.14 16 8 C -0.12 -4.37 8.56 22.26 0.19 -4.18 16 9 C -0.05 -1.97 4.76 -19.77 -0.09 -2.06 16 10 C 0.05 2.16 2.04 -12.28 -0.03 2.13 16 11 H 0.03 1.53 5.32 -2.39 -0.01 1.51 16 12 C -0.13 -5.76 8.83 71.98 0.64 -5.13 16 13 C -0.59 -32.42 8.48 25.60 0.22 -32.21 16 14 H 0.03 1.59 7.77 -2.91 -0.02 1.57 16 15 C -0.01 -0.28 5.20 84.66 0.44 0.16 16 16 N -0.93 -56.56 13.70 21.45 0.29 -56.26 16 17 Si 1.07 49.38 26.44 68.60 1.81 51.19 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 19 H -0.25 -10.59 6.14 99.48 0.61 -9.98 16 20 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 21 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 22 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 24 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 25 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 26 H 0.13 4.66 7.55 -2.91 -0.02 4.64 16 27 H 0.05 2.05 7.19 -2.39 -0.02 2.04 16 28 H 0.04 1.94 5.46 -2.39 -0.01 1.92 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.26 15.73 8.73 -92.71 -0.81 14.92 16 Total: -1.00 -63.94 259.20 6.37 -57.57 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.00 Total: 7.45 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.34 Total: -41.45 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.29 Total: -56.26 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.85 Total: -14.54 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.77 Total: -3.97 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.81 Total: 51.19 kcal Total: -63.94 6.37 -57.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084353581.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.458 kcal (2) G-P(sol) polarization free energy of solvation -63.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds