Wall clock time and date at job start Mon Mar 30 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35909 * 116.99726 * 2 1 4 4 C 1.38766 * 120.04105 * 0.02643 * 3 2 1 5 5 C 1.38135 * 119.99079 * 179.72158 * 4 3 2 6 6 C 1.38246 * 120.08094 * 0.50753 * 5 4 3 7 7 C 1.50700 * 119.96041 * 179.76549 * 6 5 4 8 8 H 1.08994 * 109.47551 * 179.72360 * 7 6 5 9 9 C 1.52996 * 109.47211 * 299.72858 * 7 6 5 10 10 C 1.50702 * 109.46869 * 59.72414 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.38476 * 120.08458 * 359.49042 * 6 5 4 19 19 F 1.35107 * 119.99851 * 180.22797 * 18 6 5 20 20 C 1.38387 * 120.00694 * 0.25557 * 18 6 5 21 21 H 1.08993 * 109.47205 * 59.99463 * 1 2 3 22 22 H 1.08999 * 109.46649 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46903 * 299.99785 * 1 2 3 24 24 H 1.07997 * 120.00804 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.95981 * 180.27974 * 5 4 3 26 26 H 1.09001 * 109.47094 * 179.97438 * 9 7 6 27 27 H 1.09003 * 109.46851 * 299.99806 * 9 7 6 28 28 H 1.09003 * 109.47532 * 59.99881 * 9 7 6 29 29 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 30 30 H 1.08000 * 120.04169 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2910 2.3753 0.0006 5 6 1.9191 3.6055 0.0064 6 6 3.2996 3.6787 0.0010 7 6 3.9820 5.0224 0.0021 8 1 5.0628 4.8810 0.0023 9 6 3.5702 5.8045 -1.2467 10 6 3.5757 5.7912 1.2329 11 1 2.8921 5.3507 1.9436 12 6 4.0816 7.0545 1.4550 13 7 3.7313 7.7232 2.5318 14 14 5.2646 7.8161 0.2261 15 1 4.4975 8.5729 -0.7956 16 1 6.1887 8.7378 0.9346 17 1 6.0479 6.7431 -0.4373 18 6 4.0562 2.5190 0.0005 19 9 5.4053 2.5925 0.0000 20 6 3.4307 1.2845 0.0000 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.2124 2.3196 0.0006 25 1 1.3310 4.5113 0.0114 26 1 4.0635 6.7765 -1.2457 27 1 3.8641 5.2484 -2.1370 28 1 2.4894 5.9459 -1.2469 29 1 4.0869 8.6120 2.6878 30 1 4.0203 0.3797 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084353585.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:51 Heat of formation + Delta-G solvation = -60.632193 kcal Electronic energy + Delta-G solvation = -15174.185650 eV Core-core repulsion = 12463.431224 eV Total energy + Delta-G solvation = -2710.754426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.33290 -39.77586 -37.36440 -34.22032 -31.62055 -30.32595 -28.63275 -26.97633 -25.06864 -23.00969 -21.93646 -19.79326 -18.16178 -16.94787 -16.14207 -15.68969 -15.54574 -15.31140 -14.89736 -14.49344 -14.09251 -13.38514 -12.89658 -12.46311 -12.30474 -12.16962 -12.12881 -12.00143 -11.40663 -10.98651 -10.87645 -10.40170 -10.18618 -9.99310 -9.41517 -9.14457 -8.59374 -8.42898 -7.60008 -6.10140 -4.10225 1.60158 1.80593 3.26171 3.32535 3.38377 3.40683 4.07730 4.39320 4.90862 5.01683 5.15967 5.20532 5.26293 5.29697 5.44462 5.56166 5.71907 5.88016 6.24057 6.32998 6.44141 6.57924 6.64747 6.73953 6.84735 7.03011 7.16265 7.47057 7.60597 7.68874 8.47022 8.92648 9.50940 11.02518 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.041387 B = 0.007918 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.379939 B = 3535.398465 C = 3817.424344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.127 3.873 4 C -0.218 4.218 5 C -0.042 4.042 6 C -0.092 4.092 7 C 0.039 3.961 8 H 0.041 0.959 9 C -0.143 4.143 10 C -0.510 4.510 11 H 0.077 0.923 12 C 0.072 3.928 13 N -0.898 5.898 14 Si 0.886 3.114 15 H -0.278 1.278 16 H -0.297 1.297 17 H -0.265 1.265 18 C 0.125 3.875 19 F -0.135 7.135 20 C -0.192 4.192 21 H 0.054 0.946 22 H 0.095 0.905 23 H 0.055 0.945 24 H 0.127 0.873 25 H 0.138 0.862 26 H 0.042 0.958 27 H 0.031 0.969 28 H 0.054 0.946 29 H 0.265 0.735 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 -11.360 -6.819 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.083 3.917 4 C -0.237 4.237 5 C -0.060 4.060 6 C -0.093 4.093 7 C 0.020 3.980 8 H 0.059 0.941 9 C -0.200 4.200 10 C -0.548 4.548 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.717 3.283 15 H -0.205 1.205 16 H -0.224 1.224 17 H -0.190 1.190 18 C 0.105 3.895 19 F -0.114 7.114 20 C -0.211 4.211 21 H 0.073 0.927 22 H 0.114 0.886 23 H 0.074 0.926 24 H 0.144 0.856 25 H 0.156 0.844 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.013 -11.382 -6.709 14.131 hybrid contribution 0.585 0.682 -0.479 1.019 sum -4.428 -10.700 -7.187 13.629 Atomic orbital electron populations 1.23003 0.78674 1.03419 1.01479 1.86004 1.21120 1.27087 1.89272 1.18452 0.91298 0.84051 0.97942 1.21238 0.99824 0.92278 1.10377 1.20770 0.93591 0.97041 0.94584 1.20226 0.93946 0.95283 0.99887 1.18257 0.96137 0.88323 0.95274 0.94082 1.22154 1.01311 0.99208 0.97308 1.20933 1.28771 0.99989 1.05063 0.90521 1.24981 0.95862 0.96926 0.95236 1.69884 1.44467 1.12769 1.26480 0.86857 0.81284 0.79275 0.80921 1.20522 1.22412 1.18988 1.17227 0.76949 0.93202 1.02089 1.91459 1.29085 1.97059 1.93789 1.20049 0.92360 0.97121 1.11616 0.92747 0.88634 0.92607 0.85555 0.84401 0.93906 0.95038 0.92679 0.92555 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.56 10.50 -19.45 -0.20 -4.77 16 3 C 0.13 2.06 6.68 -39.23 -0.26 1.80 16 4 C -0.22 -3.47 9.04 -39.42 -0.36 -3.82 16 5 C -0.04 -0.78 8.69 -39.62 -0.34 -1.12 16 6 C -0.09 -1.95 4.74 -104.53 -0.50 -2.44 16 7 C 0.04 0.93 2.05 -92.92 -0.19 0.74 16 8 H 0.04 1.03 6.17 -51.93 -0.32 0.71 16 9 C -0.14 -3.08 8.49 37.16 0.32 -2.76 16 10 C -0.51 -14.17 8.81 -34.44 -0.30 -14.47 16 11 H 0.08 2.30 7.84 -52.49 -0.41 1.89 16 12 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 13 N -0.90 -27.24 13.96 55.43 0.77 -26.47 16 14 Si 0.89 21.96 24.37 -169.99 -4.14 17.82 16 15 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 16 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 17 H -0.26 -6.38 6.52 56.52 0.37 -6.01 16 18 C 0.12 2.48 7.24 -39.44 -0.29 2.19 16 19 F -0.14 -2.78 16.19 2.25 0.04 -2.74 16 20 C -0.19 -3.33 9.97 -39.37 -0.39 -3.72 16 21 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 22 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.51 7.66 -51.92 -0.40 0.11 16 24 H 0.13 1.61 6.30 -52.49 -0.33 1.28 16 25 H 0.14 2.52 7.58 -52.49 -0.40 2.13 16 26 H 0.04 0.96 3.29 -51.93 -0.17 0.79 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 1.11 7.40 -51.93 -0.38 0.73 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 253.05 15.07 3.81 3.81 Total: -1.00 -30.58 253.05 -4.40 -34.99 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -3.26 Total: -2.27 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: -1.42 Total: -20.37 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.77 Total: -26.47 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.20 Total: -4.77 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.58 -4.40 -34.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084353585.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.646 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds