Wall clock time and date at job start Mon Mar 30 2020 02:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35909 * 116.99726 * 2 1 4 4 C 1.38766 * 120.04105 * 0.02643 * 3 2 1 5 5 C 1.38135 * 119.99079 * 179.72158 * 4 3 2 6 6 C 1.38246 * 120.08094 * 0.50753 * 5 4 3 7 7 C 1.50700 * 119.96041 * 179.76549 * 6 5 4 8 8 H 1.08994 * 109.47551 * 179.72360 * 7 6 5 9 9 C 1.52996 * 109.47211 * 299.72858 * 7 6 5 10 10 C 1.50702 * 109.46869 * 59.72414 * 7 6 5 11 11 H 1.08002 * 120.00299 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99942 * 179.72213 * 10 7 6 13 13 N 1.31514 * 119.99985 * 180.27663 * 12 10 7 14 14 Si 1.86800 * 119.99777 * 0.28166 * 12 10 7 15 15 H 1.48498 * 109.47109 * 89.99834 * 14 12 10 16 16 H 1.48507 * 109.46754 * 209.99574 * 14 12 10 17 17 H 1.48498 * 109.47278 * 329.99405 * 14 12 10 18 18 C 1.38476 * 120.08458 * 359.49042 * 6 5 4 19 19 F 1.35107 * 119.99851 * 180.22797 * 18 6 5 20 20 C 1.38387 * 120.00694 * 0.25557 * 18 6 5 21 21 H 1.08993 * 109.47205 * 59.99463 * 1 2 3 22 22 H 1.08999 * 109.46649 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46903 * 299.99785 * 1 2 3 24 24 H 1.07997 * 120.00804 * 359.97438 * 4 3 2 25 25 H 1.07997 * 119.95981 * 180.27974 * 5 4 3 26 26 H 1.09001 * 109.47094 * 179.97438 * 9 7 6 27 27 H 1.09003 * 109.46851 * 299.99806 * 9 7 6 28 28 H 1.09003 * 109.47532 * 59.99881 * 9 7 6 29 29 H 0.96996 * 119.99730 * 180.02562 * 13 12 10 30 30 H 1.08000 * 120.04169 * 179.97438 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2910 2.3753 0.0006 5 6 1.9191 3.6055 0.0064 6 6 3.2996 3.6787 0.0010 7 6 3.9820 5.0224 0.0021 8 1 5.0628 4.8810 0.0023 9 6 3.5702 5.8045 -1.2467 10 6 3.5757 5.7912 1.2329 11 1 2.8921 5.3507 1.9436 12 6 4.0816 7.0545 1.4550 13 7 3.7313 7.7232 2.5318 14 14 5.2646 7.8161 0.2261 15 1 4.4975 8.5729 -0.7956 16 1 6.1887 8.7378 0.9346 17 1 6.0479 6.7431 -0.4373 18 6 4.0562 2.5190 0.0005 19 9 5.4053 2.5925 0.0000 20 6 3.4307 1.2845 0.0000 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 0.2124 2.3196 0.0006 25 1 1.3310 4.5113 0.0114 26 1 4.0635 6.7765 -1.2457 27 1 3.8641 5.2484 -2.1370 28 1 2.4894 5.9459 -1.2469 29 1 4.0869 8.6120 2.6878 30 1 4.0203 0.3797 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084353585.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:50 Heat of formation + Delta-G solvation = -80.096176 kcal Electronic energy + Delta-G solvation = -15175.029671 eV Core-core repulsion = 12463.431224 eV Total energy + Delta-G solvation = -2711.598448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.87106 -41.02066 -38.73087 -35.98938 -33.62536 -31.69582 -30.03150 -27.97685 -27.09219 -24.52980 -23.37010 -21.46513 -19.43202 -18.81066 -17.69667 -17.15606 -16.89368 -16.78448 -16.28797 -16.00661 -15.53912 -14.90409 -14.84348 -14.12808 -13.79312 -13.70602 -13.53135 -13.16947 -12.90397 -12.84598 -12.30517 -11.87011 -11.81640 -11.70953 -11.27369 -11.13463 -10.74390 -9.81918 -9.01453 -8.30439 -6.34271 0.20348 0.39934 1.29308 1.36820 1.46525 2.24687 2.31897 2.66522 3.05093 3.52555 3.81486 3.95435 4.06686 4.30910 4.44313 4.46905 4.52078 4.59041 4.70408 4.78791 4.81566 5.06342 5.14775 5.17879 5.25775 5.45386 5.60636 5.73218 5.79924 6.28271 6.41629 6.70707 7.30300 8.85648 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.041387 B = 0.007918 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.379939 B = 3535.398465 C = 3817.424344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.327 6.327 3 C 0.139 3.861 4 C -0.205 4.205 5 C -0.049 4.049 6 C -0.125 4.125 7 C 0.040 3.960 8 H 0.024 0.976 9 C -0.139 4.139 10 C -0.508 4.508 11 H 0.039 0.961 12 C 0.016 3.984 13 N -0.945 5.945 14 Si 0.945 3.055 15 H -0.260 1.260 16 H -0.299 1.299 17 H -0.255 1.255 18 C 0.107 3.893 19 F -0.146 7.146 20 C -0.193 4.193 21 H 0.069 0.931 22 H 0.124 0.876 23 H 0.063 0.937 24 H 0.163 0.837 25 H 0.135 0.865 26 H 0.034 0.966 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.266 0.734 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 -12.839 -8.460 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.093 3.907 4 C -0.224 4.224 5 C -0.067 4.067 6 C -0.126 4.126 7 C 0.021 3.979 8 H 0.042 0.958 9 C -0.196 4.196 10 C -0.546 4.546 11 H 0.058 0.942 12 C -0.181 4.181 13 N -0.586 5.586 14 Si 0.772 3.228 15 H -0.185 1.185 16 H -0.226 1.226 17 H -0.180 1.180 18 C 0.088 3.912 19 F -0.125 7.125 20 C -0.212 4.212 21 H 0.087 0.913 22 H 0.142 0.858 23 H 0.081 0.919 24 H 0.180 0.820 25 H 0.153 0.847 26 H 0.052 0.948 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -6.016 -12.885 -8.368 16.500 hybrid contribution 0.739 0.954 0.094 1.210 sum -5.277 -11.931 -8.274 15.449 Atomic orbital electron populations 1.23418 0.76024 1.05845 1.02535 1.86024 1.23765 1.25711 1.88611 1.18522 0.91067 0.85030 0.96062 1.21513 1.01600 0.90926 1.08344 1.20805 0.92679 0.98272 0.94961 1.20095 0.95101 0.94285 1.03157 1.18107 0.95357 0.89967 0.94492 0.95785 1.22068 1.01861 0.98575 0.97123 1.21164 1.27426 1.00151 1.05863 0.94228 1.25793 0.97715 0.97589 0.97032 1.70022 1.46422 1.13417 1.28694 0.85898 0.79268 0.78626 0.78970 1.18528 1.22632 1.17973 1.17395 0.76588 0.93924 1.03325 1.91422 1.29838 1.97165 1.94048 1.20228 0.93348 0.96708 1.10915 0.91274 0.85765 0.91852 0.81983 0.84723 0.94783 0.92378 0.91770 0.92452 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.11 10.50 -92.52 -0.97 -9.08 16 3 C 0.14 4.11 6.68 22.50 0.15 4.26 16 4 C -0.21 -5.96 9.04 22.37 0.20 -5.76 16 5 C -0.05 -1.78 8.69 22.25 0.19 -1.59 16 6 C -0.13 -5.27 4.74 -19.81 -0.09 -5.36 16 7 C 0.04 1.90 2.05 -12.29 -0.03 1.87 16 8 H 0.02 1.22 6.17 -2.39 -0.01 1.21 16 9 C -0.14 -5.82 8.49 71.98 0.61 -5.21 16 10 C -0.51 -29.01 8.81 25.60 0.23 -28.79 16 11 H 0.04 2.48 7.84 -2.91 -0.02 2.46 16 12 C 0.02 0.94 5.45 84.66 0.46 1.40 16 13 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 14 Si 0.95 45.47 24.37 68.60 1.67 47.15 16 15 H -0.26 -11.63 6.87 99.48 0.68 -10.95 16 16 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 17 H -0.26 -11.78 6.52 99.48 0.65 -11.13 16 18 C 0.11 4.21 7.24 22.36 0.16 4.37 16 19 F -0.15 -6.02 16.19 44.97 0.73 -5.29 16 20 C -0.19 -6.35 9.97 22.41 0.22 -6.12 16 21 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 22 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.06 0.90 7.66 -2.38 -0.02 0.88 16 24 H 0.16 3.46 6.30 -2.91 -0.02 3.44 16 25 H 0.13 4.88 7.58 -2.91 -0.02 4.85 16 26 H 0.03 1.46 3.29 -2.39 -0.01 1.45 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.51 7.40 -2.39 -0.02 2.49 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.15 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -67.18 253.05 6.02 -61.17 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: 1.07 Total: 4.32 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 3.22 Total: -39.57 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.30 Total: -58.69 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.97 Total: -9.08 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.73 Total: -5.29 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.15 kcal Total: -67.18 6.02 -61.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084353585.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.929 kcal (2) G-P(sol) polarization free energy of solvation -67.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds