Wall clock time and date at job start Mon Mar 30 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30932 * 125.76110 * 2 1 4 4 N 1.28870 * 108.99717 * 179.75720 * 3 2 1 5 5 H 0.96998 * 125.94703 * 180.26131 * 4 3 2 6 6 C 1.35187 * 108.09755 * 0.44144 * 4 3 2 7 7 C 1.47769 * 126.44616 * 179.82378 * 6 4 3 8 8 O 1.21562 * 120.00135 * 359.71456 * 7 6 4 9 9 N 1.34784 * 120.00456 * 179.71534 * 7 6 4 10 10 C 1.46497 * 120.00075 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47049 * 324.99133 * 10 9 7 12 12 C 1.52997 * 109.47188 * 85.00024 * 10 9 7 13 13 C 1.50706 * 109.46582 * 204.99875 * 10 9 7 14 14 H 1.07999 * 120.00196 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99394 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47474 * 90.00322 * 17 15 13 19 19 H 1.48510 * 109.47116 * 210.00055 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99887 * 17 15 13 21 21 N 1.32146 * 107.11029 * 359.56440 * 6 4 3 22 22 H 1.09006 * 109.47017 * 269.95685 * 1 2 3 23 23 H 1.08995 * 109.47039 * 29.95228 * 1 2 3 24 24 H 1.08992 * 109.47374 * 149.96068 * 1 2 3 25 25 H 0.96996 * 119.99132 * 359.97438 * 9 7 6 26 26 H 1.09002 * 109.47153 * 299.99573 * 12 10 9 27 27 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 28 28 H 1.09004 * 109.47261 * 59.99745 * 12 10 9 29 29 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2722 1.0625 0.0000 4 7 3.5061 0.6908 0.0052 5 1 4.2778 1.2784 0.0099 6 6 3.5376 -0.6607 -0.0013 7 6 4.7464 -1.5106 -0.0023 8 8 5.8492 -0.9990 -0.0022 9 7 4.6265 -2.8531 -0.0033 10 6 5.8249 -3.6956 -0.0037 11 1 6.6063 -3.2156 -0.5927 12 6 6.3142 -3.8871 1.4333 13 6 5.4953 -5.0375 -0.6052 14 1 4.4932 -5.2424 -0.9520 15 6 6.4731 -6.0037 -0.7126 16 7 7.6932 -5.7544 -0.2898 17 14 6.0646 -7.6667 -1.4589 18 1 6.2968 -7.6220 -2.9249 19 1 6.9321 -8.7082 -0.8519 20 1 4.6404 -7.9923 -1.1929 21 7 2.2841 -1.0788 -0.0008 22 1 -0.3633 -0.0008 1.0277 23 1 -0.3633 0.8904 -0.5131 24 1 -0.3634 -0.8895 -0.5144 25 1 3.7466 -3.2613 -0.0030 26 1 6.5526 -2.9166 1.8683 27 1 7.2056 -4.5144 1.4329 28 1 5.5327 -4.3673 2.0223 29 1 8.3809 -6.4343 -0.3651 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087448756.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:22 Heat of formation + Delta-G solvation = 17.427552 kcal Electronic energy + Delta-G solvation = -14922.157761 eV Core-core repulsion = 12267.000972 eV Total energy + Delta-G solvation = -2655.156789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.58314 -40.58515 -36.91162 -35.07836 -34.39292 -33.31361 -30.88335 -29.31111 -27.36136 -25.84959 -23.10027 -22.15348 -21.50552 -20.17999 -18.72436 -17.73723 -17.61746 -17.18848 -16.24327 -15.78587 -15.13111 -14.63879 -14.43836 -13.88131 -13.75573 -13.55667 -13.17387 -13.02273 -12.91797 -12.78207 -12.28054 -12.14693 -11.72293 -11.62483 -11.38999 -11.14485 -10.62797 -10.56124 -9.93549 -8.18780 -6.35819 -0.05380 1.29596 1.31775 1.47642 1.48414 1.59218 2.07623 2.29356 2.46418 3.01229 3.12526 3.41538 3.78651 4.71219 4.79989 4.82099 4.84962 4.89651 5.03182 5.06823 5.31757 5.37688 5.48972 5.62775 5.66746 5.81693 6.04752 6.60896 6.68222 6.96719 7.10449 7.36767 8.87656 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.042450 B = 0.006391 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.441982 B = 4379.997792 C = 4848.191739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C 0.177 3.823 3 N -0.304 5.304 4 N -0.353 5.353 5 H 0.465 0.535 6 C 0.173 3.827 7 C 0.591 3.409 8 O -0.573 6.573 9 N -0.670 5.670 10 C 0.269 3.731 11 H 0.013 0.987 12 C -0.137 4.137 13 C -0.550 4.550 14 H 0.073 0.927 15 C 0.019 3.981 16 N -0.914 5.914 17 Si 0.972 3.028 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.261 1.261 21 N -0.483 5.483 22 H 0.098 0.902 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.412 0.588 26 H 0.018 0.982 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.240 8.497 0.882 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 N -0.143 5.143 4 N -0.078 5.078 5 H 0.314 0.686 6 C -0.106 4.106 7 C 0.372 3.628 8 O -0.452 6.452 9 N -0.318 5.318 10 C 0.167 3.833 11 H 0.031 0.969 12 C -0.195 4.195 13 C -0.588 4.588 14 H 0.091 0.909 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.797 3.203 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.185 1.185 21 N -0.212 5.212 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.114 0.886 25 H 0.248 0.752 26 H 0.037 0.963 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.699 8.956 0.903 14.762 hybrid contribution 0.711 -0.618 -0.304 0.990 sum -10.989 8.338 0.599 13.807 Atomic orbital electron populations 1.20264 0.80258 1.05408 1.05169 1.25227 1.00513 0.83092 1.01347 1.74148 0.89628 1.27336 1.23169 1.44844 1.07788 1.06255 1.48891 0.68550 1.24074 0.94495 0.85062 1.06920 1.16772 0.85095 0.82956 0.77977 1.90794 1.26751 1.74256 1.53441 1.46150 1.12425 1.04081 1.69106 1.18606 0.82088 0.88509 0.94097 0.96865 1.21935 1.02097 0.98659 0.96846 1.21495 0.97675 0.97860 1.41797 0.90934 1.25738 0.94536 1.02550 0.95334 1.70023 1.02767 1.35885 1.46564 0.85335 0.78641 0.78154 0.78168 1.20335 1.20800 1.18545 1.71187 0.98774 1.31497 1.19740 0.88303 0.88152 0.88623 0.75199 0.96274 0.90815 0.93999 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.82 10.51 71.24 0.75 -0.07 15 2 C 0.18 4.66 8.14 138.66 1.13 5.79 15 3 N -0.30 -8.15 12.28 -51.38 -0.63 -8.79 15 4 N -0.35 -9.88 6.98 -51.88 -0.36 -10.24 15 5 H 0.46 10.63 8.96 -219.79 -1.97 8.66 15 6 C 0.17 5.83 8.03 136.70 1.10 6.93 15 7 C 0.59 24.09 7.79 86.76 0.68 24.76 15 8 O -0.57 -26.34 16.76 -3.91 -0.07 -26.41 15 9 N -0.67 -28.69 5.07 -449.05 -2.27 -30.97 15 10 C 0.27 13.73 2.56 44.25 0.11 13.84 15 11 H 0.01 0.79 7.58 -2.39 -0.02 0.77 15 12 C -0.14 -6.74 9.26 71.98 0.67 -6.07 15 13 C -0.55 -28.84 8.73 25.60 0.22 -28.62 15 14 H 0.07 3.61 7.74 -2.91 -0.02 3.59 15 15 C 0.02 1.00 5.30 84.66 0.45 1.45 15 16 N -0.91 -51.09 11.32 21.45 0.24 -50.85 15 17 Si 0.97 41.45 29.54 68.60 2.03 43.48 15 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 19 H -0.28 -11.85 7.11 99.48 0.71 -11.15 15 20 H -0.26 -10.61 7.11 99.48 0.71 -9.91 15 21 N -0.48 -15.33 11.09 -181.25 -2.01 -17.34 15 22 H 0.10 1.25 8.14 -2.38 -0.02 1.23 15 23 H 0.10 1.21 8.14 -2.39 -0.02 1.19 15 24 H 0.10 1.37 8.14 -2.39 -0.02 1.35 15 25 H 0.41 16.11 8.26 -92.71 -0.77 15.34 15 26 H 0.02 0.88 8.14 -2.39 -0.02 0.86 15 27 H 0.07 3.96 6.07 -2.39 -0.01 3.94 15 28 H 0.04 1.91 8.14 -2.38 -0.02 1.90 15 29 H 0.27 14.11 8.31 -92.71 -0.77 13.34 15 Total: -1.00 -63.48 262.32 0.49 -62.99 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -1.54 Total: 20.11 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 5.10 Total: 18.01 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -5.04 Total: -118.19 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.07 Total: -26.41 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -63.48 0.49 -62.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087448756.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.418 kcal (2) G-P(sol) polarization free energy of solvation -63.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds