Wall clock time and date at job start Mon Mar 30 2020 03:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47516 * 2 1 4 4 F 1.39900 * 109.46976 * 120.00056 * 2 1 3 5 5 C 1.52999 * 109.46934 * 239.99529 * 2 1 3 6 6 O 1.42905 * 109.47252 * 55.00655 * 5 2 1 7 7 C 1.35899 * 117.00067 * 179.97438 * 6 5 2 8 8 C 1.39153 * 119.93453 * 359.72856 * 7 6 5 9 9 C 1.38525 * 120.44432 * 179.72659 * 8 7 6 10 10 C 1.37675 * 120.30247 * 0.54078 * 9 8 7 11 11 C 1.40730 * 119.85355 * 359.73238 * 10 9 8 12 12 C 1.41402 * 120.21389 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00011 * 150.19760 * 12 11 10 14 14 C 1.39932 * 119.99798 * 330.19160 * 12 11 10 15 15 N 1.30828 * 120.00036 * 161.73289 * 14 12 11 16 16 Si 1.86801 * 120.00289 * 341.73736 * 14 12 11 17 17 H 1.48496 * 109.47340 * 95.41030 * 16 14 12 18 18 H 1.48505 * 109.46989 * 215.41027 * 16 14 12 19 19 H 1.48496 * 109.47017 * 335.40609 * 16 14 12 20 20 C 1.38102 * 119.93022 * 179.97438 * 7 6 5 21 21 H 1.08995 * 109.46999 * 300.00669 * 1 2 3 22 22 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46969 * 59.99876 * 1 2 3 24 24 H 1.09004 * 109.47420 * 175.00334 * 5 2 1 25 25 H 1.08999 * 109.47910 * 295.00351 * 5 2 1 26 26 H 1.08009 * 119.77566 * 359.97024 * 8 7 6 27 27 H 1.07993 * 119.84834 * 180.27618 * 9 8 7 28 28 H 1.08000 * 120.06874 * 179.75413 * 10 9 8 29 29 H 0.97004 * 120.00496 * 179.97438 * 15 14 12 30 30 H 1.08002 * 120.15221 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0399 -0.7214 -1.2492 6 8 1.4702 -0.1189 -2.4131 7 6 1.8234 -0.6445 -3.6155 8 6 2.7075 -1.7176 -3.6716 9 6 3.0704 -2.2652 -4.8912 10 6 2.5679 -1.7455 -6.0630 11 6 1.6773 -0.6567 -6.0213 12 6 1.1563 -0.1174 -7.2201 13 1 0.1782 0.3405 -7.2259 14 6 1.9080 -0.1768 -8.3988 15 7 1.3215 -0.0184 -9.5575 16 14 3.7491 -0.4824 -8.3181 17 1 4.0190 -1.9309 -8.5025 18 1 4.4263 0.2880 -9.3921 19 1 4.2656 -0.0470 -6.9957 20 6 1.3081 -0.1092 -4.7796 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 3.1263 -0.6445 -1.2952 25 1 1.7516 -1.7716 -1.2056 26 1 3.1105 -2.1288 -2.7578 27 1 3.7538 -3.1007 -4.9233 28 1 2.8565 -2.1728 -7.0120 29 1 1.8426 -0.0592 -10.3746 30 1 0.6247 0.7260 -4.7366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213685433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:02 Heat of formation + Delta-G solvation = -83.430162 kcal Electronic energy + Delta-G solvation = -14776.125825 eV Core-core repulsion = 12064.382805 eV Total energy + Delta-G solvation = -2711.743020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.77055 -39.14606 -36.74180 -33.56885 -32.60583 -30.40000 -28.98318 -26.77046 -25.17045 -21.97242 -21.38193 -20.28688 -18.16454 -16.71345 -16.33678 -15.85679 -15.55547 -14.92340 -14.63742 -14.55250 -14.05013 -13.21115 -12.79794 -12.72679 -12.21637 -12.17682 -12.05533 -11.72675 -11.35038 -11.12702 -10.76952 -10.64528 -10.49275 -10.09681 -9.86021 -9.57414 -9.21708 -7.77456 -7.20682 -7.00370 -4.57455 2.52512 2.66416 3.09048 3.19598 3.30586 3.53201 3.95794 4.43466 4.57060 4.64526 4.87316 5.07759 5.35165 5.48752 5.52588 5.67668 5.86164 5.99877 6.08920 6.12995 6.40355 6.62011 6.69787 6.86973 7.32262 7.42673 7.50854 7.67267 7.83977 8.23358 8.37500 8.59601 8.74945 10.01459 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.055445 B = 0.006232 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.885568 B = 4491.890790 C = 4795.456070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.091 3.909 3 H 0.092 0.908 4 F -0.209 7.209 5 C 0.041 3.959 6 O -0.319 6.319 7 C 0.150 3.850 8 C -0.323 4.323 9 C -0.049 4.049 10 C -0.261 4.261 11 C 0.119 3.881 12 C -0.444 4.444 13 H 0.093 0.907 14 C 0.086 3.914 15 N -0.804 5.804 16 Si 0.914 3.086 17 H -0.270 1.270 18 H -0.291 1.291 19 H -0.244 1.244 20 C -0.238 4.238 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.286 0.714 30 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -0.582 11.544 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.055 3.945 3 H 0.110 0.890 4 F -0.190 7.190 5 C -0.036 4.036 6 O -0.234 6.234 7 C 0.107 3.893 8 C -0.343 4.343 9 C -0.067 4.067 10 C -0.280 4.280 11 C 0.115 3.885 12 C -0.472 4.472 13 H 0.111 0.889 14 C -0.134 4.134 15 N -0.428 5.428 16 Si 0.740 3.260 17 H -0.196 1.196 18 H -0.218 1.218 19 H -0.167 1.167 20 C -0.258 4.258 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.114 0.886 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.850 -0.394 11.314 11.471 hybrid contribution 0.985 -0.457 -0.071 1.088 sum 2.834 -0.851 11.243 11.626 Atomic orbital electron populations 1.22304 0.93434 1.03733 1.03775 1.21335 0.95954 0.96266 0.80957 0.88987 1.92814 1.90523 1.83718 1.51967 1.22998 0.98457 0.97578 0.84582 1.85882 1.67591 1.57414 1.12504 1.18748 0.94661 0.92749 0.83166 1.20449 1.11174 1.05151 0.97512 1.20388 0.96811 0.97124 0.92383 1.21011 1.08398 1.01946 0.96615 1.17462 0.89225 0.89512 0.92268 1.19476 1.04311 1.32888 0.90488 0.88933 1.26168 1.01857 0.91008 0.94373 1.69692 1.38964 1.35147 0.98991 0.86279 0.81668 0.78627 0.79423 1.19602 1.21805 1.16702 1.20259 1.10896 1.05293 0.89329 0.91711 0.91550 0.89426 0.91568 0.91482 0.88289 0.88554 0.88037 0.90320 0.87360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.00 9.45 37.16 0.35 -1.64 16 2 C 0.09 1.13 4.38 -26.73 -0.12 1.01 16 3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 4 F -0.21 -2.77 17.08 2.25 0.04 -2.73 16 5 C 0.04 0.60 4.68 37.16 0.17 0.78 16 6 O -0.32 -5.96 9.25 -19.42 -0.18 -6.14 16 7 C 0.15 3.28 6.67 -39.29 -0.26 3.02 16 8 C -0.32 -6.79 9.05 -39.14 -0.35 -7.14 16 9 C -0.05 -1.06 10.02 -39.68 -0.40 -1.46 16 10 C -0.26 -6.31 7.17 -38.85 -0.28 -6.59 16 11 C 0.12 3.04 5.10 -106.85 -0.55 2.49 16 12 C -0.44 -11.97 9.57 -37.74 -0.36 -12.33 16 13 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 14 C 0.09 2.23 5.40 -17.35 -0.09 2.13 16 15 N -0.80 -21.20 13.93 55.55 0.77 -20.43 16 16 Si 0.91 20.71 24.52 -169.99 -4.17 16.54 16 17 H -0.27 -5.92 6.71 56.52 0.38 -5.54 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.24 -5.70 6.86 56.52 0.39 -5.31 16 20 C -0.24 -5.71 9.73 -38.73 -0.38 -6.08 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 24 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16 25 H 0.07 0.98 7.67 -51.93 -0.40 0.59 16 26 H 0.10 1.81 6.27 -52.48 -0.33 1.48 16 27 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.10 2.43 4.73 -52.49 -0.25 2.18 16 29 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 257.45 15.07 3.88 3.88 Total: -1.00 -27.34 257.45 -5.39 -32.72 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.47 Total: 1.97 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: -2.26 Total: -25.81 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.77 Total: -20.43 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.18 Total: -6.14 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.17 Total: 16.54 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -27.34 -5.39 -32.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213685433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.706 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds