Wall clock time and date at job start Mon Mar 30 2020 03:03:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08995 * 109.47516 * 2 1
4 4 F 1.39900 * 109.46976 * 120.00056 * 2 1 3
5 5 C 1.52999 * 109.46934 * 239.99529 * 2 1 3
6 6 O 1.42905 * 109.47252 * 55.00655 * 5 2 1
7 7 C 1.35899 * 117.00067 * 179.97438 * 6 5 2
8 8 C 1.39153 * 119.93453 * 359.72856 * 7 6 5
9 9 C 1.38525 * 120.44432 * 179.72659 * 8 7 6
10 10 C 1.37675 * 120.30247 * 0.54078 * 9 8 7
11 11 C 1.40730 * 119.85355 * 359.73238 * 10 9 8
12 12 C 1.41402 * 120.21389 * 180.02562 * 11 10 9
13 13 H 1.07996 * 120.00011 * 150.19760 * 12 11 10
14 14 C 1.39932 * 119.99798 * 330.19160 * 12 11 10
15 15 N 1.30828 * 120.00036 * 161.73289 * 14 12 11
16 16 Si 1.86801 * 120.00289 * 341.73736 * 14 12 11
17 17 H 1.48496 * 109.47340 * 95.41030 * 16 14 12
18 18 H 1.48505 * 109.46989 * 215.41027 * 16 14 12
19 19 H 1.48496 * 109.47017 * 335.40609 * 16 14 12
20 20 C 1.38102 * 119.93022 * 179.97438 * 7 6 5
21 21 H 1.08995 * 109.46999 * 300.00669 * 1 2 3
22 22 H 1.08995 * 109.47516 * 180.02562 * 1 2 3
23 23 H 1.08999 * 109.46969 * 59.99876 * 1 2 3
24 24 H 1.09004 * 109.47420 * 175.00334 * 5 2 1
25 25 H 1.08999 * 109.47910 * 295.00351 * 5 2 1
26 26 H 1.08009 * 119.77566 * 359.97024 * 8 7 6
27 27 H 1.07993 * 119.84834 * 180.27618 * 9 8 7
28 28 H 1.08000 * 120.06874 * 179.75413 * 10 9 8
29 29 H 0.97004 * 120.00496 * 179.97438 * 15 14 12
30 30 H 1.08002 * 120.15221 * 359.97438 * 20 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 9 1.9963 -0.6595 1.1423
5 6 2.0399 -0.7214 -1.2492
6 8 1.4702 -0.1189 -2.4131
7 6 1.8234 -0.6445 -3.6155
8 6 2.7075 -1.7176 -3.6716
9 6 3.0704 -2.2652 -4.8912
10 6 2.5679 -1.7455 -6.0630
11 6 1.6773 -0.6567 -6.0213
12 6 1.1563 -0.1174 -7.2201
13 1 0.1782 0.3405 -7.2259
14 6 1.9080 -0.1768 -8.3988
15 7 1.3215 -0.0184 -9.5575
16 14 3.7491 -0.4824 -8.3181
17 1 4.0190 -1.9309 -8.5025
18 1 4.4263 0.2880 -9.3921
19 1 4.2656 -0.0470 -6.9957
20 6 1.3081 -0.1092 -4.7796
21 1 -0.3633 0.5139 0.8899
22 1 -0.3634 -1.0276 0.0005
23 1 -0.3633 0.5138 -0.8900
24 1 3.1263 -0.6445 -1.2952
25 1 1.7516 -1.7716 -1.2056
26 1 3.1105 -2.1288 -2.7578
27 1 3.7538 -3.1007 -4.9233
28 1 2.8565 -2.1728 -7.0120
29 1 1.8426 -0.0592 -10.3746
30 1 0.6247 0.7260 -4.7366
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000213685433.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:02
Heat of formation + Delta-G solvation = -83.430162 kcal
Electronic energy + Delta-G solvation = -14776.125825 eV
Core-core repulsion = 12064.382805 eV
Total energy + Delta-G solvation = -2711.743020 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-47.77055 -39.14606 -36.74180 -33.56885 -32.60583 -30.40000 -28.98318 -26.77046
-25.17045 -21.97242 -21.38193 -20.28688 -18.16454 -16.71345 -16.33678 -15.85679
-15.55547 -14.92340 -14.63742 -14.55250 -14.05013 -13.21115 -12.79794 -12.72679
-12.21637 -12.17682 -12.05533 -11.72675 -11.35038 -11.12702 -10.76952 -10.64528
-10.49275 -10.09681 -9.86021 -9.57414 -9.21708 -7.77456 -7.20682 -7.00370
-4.57455 2.52512 2.66416 3.09048 3.19598 3.30586 3.53201 3.95794
4.43466 4.57060 4.64526 4.87316 5.07759 5.35165 5.48752 5.52588
5.67668 5.86164 5.99877 6.08920 6.12995 6.40355 6.62011 6.69787
6.86973 7.32262 7.42673 7.50854 7.67267 7.83977 8.23358 8.37500
8.59601 8.74945 10.01459
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.055445 B = 0.006232 C = 0.005837
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 504.885568 B = 4491.890790 C = 4795.456070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.091 3.909
3 H 0.092 0.908
4 F -0.209 7.209
5 C 0.041 3.959
6 O -0.319 6.319
7 C 0.150 3.850
8 C -0.323 4.323
9 C -0.049 4.049
10 C -0.261 4.261
11 C 0.119 3.881
12 C -0.444 4.444
13 H 0.093 0.907
14 C 0.086 3.914
15 N -0.804 5.804
16 Si 0.914 3.086
17 H -0.270 1.270
18 H -0.291 1.291
19 H -0.244 1.244
20 C -0.238 4.238
21 H 0.064 0.936
22 H 0.065 0.935
23 H 0.087 0.913
24 H 0.066 0.934
25 H 0.067 0.933
26 H 0.099 0.901
27 H 0.096 0.904
28 H 0.102 0.898
29 H 0.286 0.714
30 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.021 -0.582 11.544 11.734
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.055 3.945
3 H 0.110 0.890
4 F -0.190 7.190
5 C -0.036 4.036
6 O -0.234 6.234
7 C 0.107 3.893
8 C -0.343 4.343
9 C -0.067 4.067
10 C -0.280 4.280
11 C 0.115 3.885
12 C -0.472 4.472
13 H 0.111 0.889
14 C -0.134 4.134
15 N -0.428 5.428
16 Si 0.740 3.260
17 H -0.196 1.196
18 H -0.218 1.218
19 H -0.167 1.167
20 C -0.258 4.258
21 H 0.083 0.917
22 H 0.084 0.916
23 H 0.106 0.894
24 H 0.084 0.916
25 H 0.085 0.915
26 H 0.117 0.883
27 H 0.114 0.886
28 H 0.120 0.880
29 H 0.097 0.903
30 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 1.850 -0.394 11.314 11.471
hybrid contribution 0.985 -0.457 -0.071 1.088
sum 2.834 -0.851 11.243 11.626
Atomic orbital electron populations
1.22304 0.93434 1.03733 1.03775 1.21335 0.95954 0.96266 0.80957
0.88987 1.92814 1.90523 1.83718 1.51967 1.22998 0.98457 0.97578
0.84582 1.85882 1.67591 1.57414 1.12504 1.18748 0.94661 0.92749
0.83166 1.20449 1.11174 1.05151 0.97512 1.20388 0.96811 0.97124
0.92383 1.21011 1.08398 1.01946 0.96615 1.17462 0.89225 0.89512
0.92268 1.19476 1.04311 1.32888 0.90488 0.88933 1.26168 1.01857
0.91008 0.94373 1.69692 1.38964 1.35147 0.98991 0.86279 0.81668
0.78627 0.79423 1.19602 1.21805 1.16702 1.20259 1.10896 1.05293
0.89329 0.91711 0.91550 0.89426 0.91568 0.91482 0.88289 0.88554
0.88037 0.90320 0.87360
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.00 9.45 37.16 0.35 -1.64 16
2 C 0.09 1.13 4.38 -26.73 -0.12 1.01 16
3 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
4 F -0.21 -2.77 17.08 2.25 0.04 -2.73 16
5 C 0.04 0.60 4.68 37.16 0.17 0.78 16
6 O -0.32 -5.96 9.25 -19.42 -0.18 -6.14 16
7 C 0.15 3.28 6.67 -39.29 -0.26 3.02 16
8 C -0.32 -6.79 9.05 -39.14 -0.35 -7.14 16
9 C -0.05 -1.06 10.02 -39.68 -0.40 -1.46 16
10 C -0.26 -6.31 7.17 -38.85 -0.28 -6.59 16
11 C 0.12 3.04 5.10 -106.85 -0.55 2.49 16
12 C -0.44 -11.97 9.57 -37.74 -0.36 -12.33 16
13 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16
14 C 0.09 2.23 5.40 -17.35 -0.09 2.13 16
15 N -0.80 -21.20 13.93 55.55 0.77 -20.43 16
16 Si 0.91 20.71 24.52 -169.99 -4.17 16.54 16
17 H -0.27 -5.92 6.71 56.52 0.38 -5.54 16
18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16
19 H -0.24 -5.70 6.86 56.52 0.39 -5.31 16
20 C -0.24 -5.71 9.73 -38.73 -0.38 -6.08 16
21 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16
23 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16
24 H 0.07 0.96 7.64 -51.93 -0.40 0.56 16
25 H 0.07 0.98 7.67 -51.93 -0.40 0.59 16
26 H 0.10 1.81 6.27 -52.48 -0.33 1.48 16
27 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16
28 H 0.10 2.43 4.73 -52.49 -0.25 2.18 16
29 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16
30 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16
LS Contribution 257.45 15.07 3.88 3.88
Total: -1.00 -27.34 257.45 -5.39 -32.72
By element:
Atomic # 1 Polarization: 5.44 SS G_CDS: -3.47 Total: 1.97 kcal
Atomic # 6 Polarization: -23.55 SS G_CDS: -2.26 Total: -25.81 kcal
Atomic # 7 Polarization: -21.20 SS G_CDS: 0.77 Total: -20.43 kcal
Atomic # 8 Polarization: -5.96 SS G_CDS: -0.18 Total: -6.14 kcal
Atomic # 9 Polarization: -2.77 SS G_CDS: 0.04 Total: -2.73 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -4.17 Total: 16.54 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -27.34 -5.39 -32.72 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000213685433.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.706 kcal
(2) G-P(sol) polarization free energy of solvation -27.336 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.041 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.430 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds