Wall clock time and date at job start Mon Mar 30 2020 03:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47516 * 2 1 4 4 F 1.39900 * 109.46976 * 120.00056 * 2 1 3 5 5 C 1.52999 * 109.46934 * 239.99529 * 2 1 3 6 6 O 1.42905 * 109.47252 * 55.00655 * 5 2 1 7 7 C 1.35899 * 117.00067 * 179.97438 * 6 5 2 8 8 C 1.39153 * 119.93453 * 359.72856 * 7 6 5 9 9 C 1.38525 * 120.44432 * 179.72659 * 8 7 6 10 10 C 1.37675 * 120.30247 * 0.54078 * 9 8 7 11 11 C 1.40730 * 119.85355 * 359.73238 * 10 9 8 12 12 C 1.41402 * 120.21389 * 180.02562 * 11 10 9 13 13 H 1.07996 * 120.00011 * 150.19760 * 12 11 10 14 14 C 1.39932 * 119.99798 * 330.19160 * 12 11 10 15 15 N 1.30828 * 120.00036 * 161.73289 * 14 12 11 16 16 Si 1.86801 * 120.00289 * 341.73736 * 14 12 11 17 17 H 1.48496 * 109.47340 * 95.41030 * 16 14 12 18 18 H 1.48505 * 109.46989 * 215.41027 * 16 14 12 19 19 H 1.48496 * 109.47017 * 335.40609 * 16 14 12 20 20 C 1.38102 * 119.93022 * 179.97438 * 7 6 5 21 21 H 1.08995 * 109.46999 * 300.00669 * 1 2 3 22 22 H 1.08995 * 109.47516 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46969 * 59.99876 * 1 2 3 24 24 H 1.09004 * 109.47420 * 175.00334 * 5 2 1 25 25 H 1.08999 * 109.47910 * 295.00351 * 5 2 1 26 26 H 1.08009 * 119.77566 * 359.97024 * 8 7 6 27 27 H 1.07993 * 119.84834 * 180.27618 * 9 8 7 28 28 H 1.08000 * 120.06874 * 179.75413 * 10 9 8 29 29 H 0.97004 * 120.00496 * 179.97438 * 15 14 12 30 30 H 1.08002 * 120.15221 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0399 -0.7214 -1.2492 6 8 1.4702 -0.1189 -2.4131 7 6 1.8234 -0.6445 -3.6155 8 6 2.7075 -1.7176 -3.6716 9 6 3.0704 -2.2652 -4.8912 10 6 2.5679 -1.7455 -6.0630 11 6 1.6773 -0.6567 -6.0213 12 6 1.1563 -0.1174 -7.2201 13 1 0.1782 0.3405 -7.2259 14 6 1.9080 -0.1768 -8.3988 15 7 1.3215 -0.0184 -9.5575 16 14 3.7491 -0.4824 -8.3181 17 1 4.0190 -1.9309 -8.5025 18 1 4.4263 0.2880 -9.3921 19 1 4.2656 -0.0470 -6.9957 20 6 1.3081 -0.1092 -4.7796 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 3.1263 -0.6445 -1.2952 25 1 1.7516 -1.7716 -1.2056 26 1 3.1105 -2.1288 -2.7578 27 1 3.7538 -3.1007 -4.9233 28 1 2.8565 -2.1728 -7.0120 29 1 1.8426 -0.0592 -10.3746 30 1 0.6247 0.7260 -4.7366 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213685433.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:01 Heat of formation + Delta-G solvation = -98.879395 kcal Electronic energy + Delta-G solvation = -14776.795754 eV Core-core repulsion = 12064.382805 eV Total energy + Delta-G solvation = -2712.412949 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.78545 -40.75401 -38.43554 -35.42611 -33.76600 -32.24314 -30.64605 -28.01561 -26.98704 -23.35102 -23.07201 -21.83978 -19.87750 -18.18208 -17.77650 -17.19391 -17.13658 -16.39164 -16.25333 -15.75840 -15.59883 -14.91607 -14.52744 -13.90157 -13.81387 -13.73059 -13.29305 -13.09614 -12.89805 -12.84980 -12.43333 -12.02912 -11.85527 -11.68194 -11.51538 -11.33410 -11.05213 -9.62904 -8.95938 -8.92175 -6.57996 0.71551 0.85649 1.27382 1.41586 1.50491 2.12593 2.15130 2.56020 3.45007 3.51991 3.63518 3.85011 4.06225 4.17822 4.39468 4.41165 4.45180 4.58962 4.79026 4.85280 4.90303 5.00906 5.09981 5.21938 5.50680 5.62398 5.70708 5.88167 5.96173 6.27148 6.58935 6.71695 6.82428 8.14837 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.055445 B = 0.006232 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.885568 B = 4491.890790 C = 4795.456070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 H 0.108 0.892 4 F -0.211 7.211 5 C 0.031 3.969 6 O -0.322 6.322 7 C 0.155 3.845 8 C -0.308 4.308 9 C -0.048 4.048 10 C -0.277 4.277 11 C 0.103 3.897 12 C -0.483 4.483 13 H 0.057 0.943 14 C 0.051 3.949 15 N -0.844 5.844 16 Si 0.968 3.032 17 H -0.254 1.254 18 H -0.276 1.276 19 H -0.254 1.254 20 C -0.260 4.260 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.296 0.704 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.918 -1.703 13.743 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.060 3.940 3 H 0.126 0.874 4 F -0.192 7.192 5 C -0.045 4.045 6 O -0.236 6.236 7 C 0.111 3.889 8 C -0.328 4.328 9 C -0.066 4.066 10 C -0.296 4.296 11 C 0.100 3.900 12 C -0.512 4.512 13 H 0.075 0.925 14 C -0.165 4.165 15 N -0.470 5.470 16 Si 0.791 3.209 17 H -0.179 1.179 18 H -0.203 1.203 19 H -0.178 1.178 20 C -0.280 4.280 21 H 0.103 0.897 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.736 -1.518 13.528 14.116 hybrid contribution 0.350 -0.139 -0.471 0.603 sum 4.086 -1.657 13.057 13.781 Atomic orbital electron populations 1.22304 0.92823 1.03855 1.04241 1.21337 0.96414 0.96585 0.79665 0.87377 1.92816 1.90598 1.83883 1.51893 1.23321 0.99134 0.98184 0.83845 1.85881 1.67719 1.57533 1.12486 1.18760 0.93885 0.92538 0.83760 1.20920 1.09327 1.03712 0.98823 1.20831 0.96543 0.97649 0.91534 1.21133 1.08745 1.01872 0.97899 1.17592 0.90050 0.90184 0.92171 1.19459 1.03920 1.35439 0.92406 0.92462 1.26839 1.05406 0.90576 0.93670 1.69713 1.40572 1.36957 0.99708 0.85452 0.76904 0.79467 0.79067 1.17920 1.20250 1.17823 1.20340 1.11619 1.05841 0.90242 0.89722 0.91643 0.90529 0.90502 0.90853 0.84681 0.84689 0.88039 0.89346 0.88123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 9.45 71.98 0.68 -2.87 16 2 C 0.10 2.08 4.38 30.59 0.13 2.21 16 3 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 4 F -0.21 -4.88 17.08 44.97 0.77 -4.11 16 5 C 0.03 0.82 4.68 71.98 0.34 1.16 16 6 O -0.32 -11.28 9.25 -92.41 -0.85 -12.13 16 7 C 0.16 6.47 6.67 22.46 0.15 6.62 16 8 C -0.31 -11.76 9.05 22.56 0.20 -11.55 16 9 C -0.05 -1.90 10.02 22.21 0.22 -1.68 16 10 C -0.28 -13.06 7.17 22.75 0.16 -12.90 16 11 C 0.10 5.35 5.10 -21.31 -0.11 5.24 16 12 C -0.48 -27.44 9.57 23.46 0.22 -27.21 16 13 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 14 C 0.05 2.71 5.40 85.25 0.46 3.17 16 15 N -0.84 -46.05 13.93 21.82 0.30 -45.75 16 16 Si 0.97 42.49 24.52 68.60 1.68 44.17 16 17 H -0.25 -10.41 6.71 99.48 0.67 -9.74 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.25 -11.48 6.86 99.48 0.68 -10.80 16 20 C -0.26 -12.62 9.73 22.82 0.22 -12.40 16 21 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.08 1.74 7.56 -2.39 -0.02 1.72 16 24 H 0.08 1.89 7.64 -2.38 -0.02 1.87 16 25 H 0.07 1.86 7.67 -2.39 -0.02 1.84 16 26 H 0.14 4.18 6.27 -2.91 -0.02 4.17 16 27 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 28 H 0.10 4.72 4.73 -2.91 -0.01 4.71 16 29 H 0.30 14.40 8.30 -92.71 -0.77 13.63 16 30 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -59.54 257.45 5.66 -53.88 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.07 Total: 14.15 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 2.69 Total: -50.22 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.30 Total: -45.75 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.85 Total: -12.13 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.77 Total: -4.11 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.68 Total: 44.17 kcal Total: -59.54 5.66 -53.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213685433.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.998 kcal (2) G-P(sol) polarization free energy of solvation -59.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds