Wall clock time and date at job start Mon Mar 30 2020 02:55:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35645 * 116.99855 * 2 1
4 4 C 1.41349 * 120.26504 * 276.16264 * 3 2 1
5 5 C 1.41157 * 120.29003 * 359.96111 * 4 3 2
6 6 H 1.07996 * 119.99929 * 331.18769 * 5 4 3
7 7 C 1.39938 * 119.99829 * 151.18262 * 5 4 3
8 8 N 1.30866 * 120.00366 * 344.99634 * 7 5 4
9 9 Si 1.86804 * 119.99570 * 164.99492 * 7 5 4
10 10 H 1.48495 * 109.47208 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.46835 * 120.00555 * 9 7 5
12 12 H 1.48507 * 109.46817 * 240.00132 * 9 7 5
13 13 C 1.40692 * 119.42192 * 179.97438 * 4 3 2
14 14 C 1.36525 * 119.92854 * 0.02562 * 13 4 3
15 15 C 1.38785 * 120.53712 * 359.72749 * 14 13 4
16 16 C 1.38348 * 120.59021 * 0.55065 * 15 14 13
17 17 C 1.50697 * 119.97546 * 179.71908 * 16 15 14
18 18 H 1.09004 * 109.46877 * 23.27881 * 17 16 15
19 19 C 1.52993 * 109.47388 * 263.27784 * 17 16 15
20 20 F 1.39903 * 109.47051 * 143.27561 * 17 16 15
21 21 H 1.09001 * 109.46587 * 186.18109 * 1 2 3
22 22 H 1.08991 * 109.47222 * 306.18138 * 1 2 3
23 23 H 1.08998 * 109.47240 * 66.18681 * 1 2 3
24 24 H 0.96998 * 119.99948 * 179.97438 * 8 7 5
25 25 H 1.08003 * 120.03387 * 180.02562 * 13 4 3
26 26 H 1.07998 * 119.73190 * 180.02562 * 14 13 4
27 27 H 1.07994 * 119.70324 * 180.29490 * 15 14 13
28 28 H 1.09004 * 109.47348 * 64.01676 * 19 17 16
29 29 H 1.09001 * 109.47435 * 184.01879 * 19 17 16
30 30 H 1.09004 * 109.47426 * 304.01761 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0448 1.2086 0.0000
4 6 2.2514 1.9029 -1.2138
5 6 1.8196 1.3441 -2.4360
6 1 1.7686 0.2715 -2.5513
7 6 1.4574 2.1801 -3.4982
8 7 1.2341 3.4515 -3.2836
9 14 1.2926 1.4808 -5.2226
10 1 1.5954 0.0273 -5.1984
11 1 -0.0944 1.6890 -5.7107
12 1 2.2452 2.1705 -6.1295
13 6 2.8916 3.1556 -1.1931
14 6 3.3070 3.6888 -0.0070
15 6 3.0983 3.0074 1.1840
16 6 2.4763 1.7717 1.1885
17 6 2.2625 1.0411 2.4890
18 1 2.2629 1.7561 3.3118
19 6 3.3885 0.0260 2.6950
20 9 1.0336 0.3734 2.4523
21 1 -0.3632 -1.0217 0.1107
22 1 -0.3633 0.6066 0.8294
23 1 -0.3633 0.4149 -0.9401
24 1 0.9834 4.0310 -4.0200
25 1 3.0541 3.6948 -2.1147
26 1 3.7976 4.6508 0.0053
27 1 3.4282 3.4439 2.1151
28 1 4.3380 0.5519 2.7950
29 1 3.1961 -0.5517 3.5990
30 1 3.4337 -0.6455 1.8375
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000214718942.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:43
Heat of formation + Delta-G solvation = -79.175416 kcal
Electronic energy + Delta-G solvation = -15683.132903 eV
Core-core repulsion = 12971.574382 eV
Total energy + Delta-G solvation = -2711.558520 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.095 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-46.92362 -38.41371 -35.80185 -34.03777 -32.04086 -29.46402 -28.16042 -26.14801
-24.85031 -22.88271 -20.80849 -19.92073 -17.29947 -16.33922 -15.80393 -15.07384
-14.81820 -14.51851 -14.16604 -14.00328 -13.52401 -12.91145 -12.55352 -12.04662
-11.90137 -11.69079 -11.46492 -11.27549 -11.08642 -10.82162 -10.55318 -10.51775
-10.26688 -9.76892 -9.58672 -9.25967 -8.52788 -7.44700 -7.32027 -6.80508
-4.40583 2.64970 2.69071 3.05261 3.11582 3.13171 3.90375 4.49227
5.05929 5.30909 5.33993 5.46918 5.58192 5.82061 6.09990 6.25007
6.35611 6.38391 6.47325 6.52489 6.58283 6.64567 6.97515 7.10645
7.19601 7.29568 7.64790 7.85339 7.97784 8.14192 8.39767 8.69982
8.79147 9.13889 10.13154
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.035097 B = 0.010073 C = 0.008518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 797.599400 B = 2779.137874 C = 3286.185077
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.042 3.958
2 O -0.324 6.324
3 C -0.005 4.005
4 C 0.096 3.904
5 C -0.447 4.447
6 H 0.084 0.916
7 C 0.073 3.927
8 N -0.795 5.795
9 Si 0.909 3.091
10 H -0.259 1.259
11 H -0.274 1.274
12 H -0.272 1.272
13 C -0.145 4.145
14 C -0.109 4.109
15 C -0.218 4.218
16 C -0.114 4.114
17 C 0.143 3.857
18 H 0.072 0.928
19 C -0.166 4.166
20 F -0.211 7.211
21 H 0.066 0.934
22 H 0.037 0.963
23 H 0.039 0.961
24 H 0.281 0.719
25 H 0.118 0.882
26 H 0.092 0.908
27 H 0.093 0.907
28 H 0.068 0.932
29 H 0.056 0.944
30 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.036 -2.008 4.557 5.086
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 O -0.241 6.241
3 C -0.050 4.050
4 C 0.093 3.907
5 C -0.476 4.476
6 H 0.102 0.898
7 C -0.144 4.144
8 N -0.421 5.421
9 Si 0.734 3.266
10 H -0.182 1.182
11 H -0.200 1.200
12 H -0.197 1.197
13 C -0.165 4.165
14 C -0.128 4.128
15 C -0.237 4.237
16 C -0.115 4.115
17 C 0.107 3.893
18 H 0.090 0.910
19 C -0.224 4.224
20 F -0.192 7.192
21 H 0.084 0.916
22 H 0.055 0.945
23 H 0.058 0.942
24 H 0.092 0.908
25 H 0.136 0.864
26 H 0.110 0.890
27 H 0.111 0.889
28 H 0.087 0.913
29 H 0.075 0.925
30 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 1.003 -1.994 4.426 4.957
hybrid contribution -0.403 0.115 -0.845 0.943
sum 0.600 -1.879 3.581 4.088
Atomic orbital electron populations
1.22741 0.82244 1.00327 0.99955 1.85849 1.18100 1.25976 1.94165
1.18405 1.05177 0.90236 0.91206 1.17903 0.89641 0.91301 0.91887
1.19528 1.37927 0.94945 0.95243 0.89763 1.25957 0.92729 0.94502
1.01248 1.69830 1.32910 1.05480 1.33858 0.86232 0.78528 0.80642
0.81224 1.18235 1.19975 1.19671 1.20987 1.00578 0.97980 0.96937
1.20408 1.00824 0.98299 0.93254 1.20007 1.10943 0.95815 0.96970
1.19948 1.03525 0.95259 0.92780 1.20143 0.80183 0.92550 0.96387
0.90970 1.22278 0.98168 0.99518 1.02436 1.92763 1.45978 1.82758
1.97672 0.91570 0.94473 0.94246 0.90837 0.86402 0.88980 0.88882
0.91341 0.92524 0.90890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.91 10.07 101.05 1.02 1.92 16
2 O -0.32 -7.91 8.60 -18.64 -0.16 -8.07 16
3 C -0.01 -0.14 5.66 -38.34 -0.22 -0.36 16
4 C 0.10 2.56 5.54 -106.68 -0.59 1.97 16
5 C -0.45 -11.91 8.17 -37.84 -0.31 -12.22 16
6 H 0.08 2.25 7.71 -52.49 -0.40 1.85 16
7 C 0.07 1.83 5.16 -17.33 -0.09 1.74 16
8 N -0.80 -20.32 11.09 55.55 0.62 -19.70 16
9 Si 0.91 18.72 29.59 -169.99 -5.03 13.70 16
10 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16
11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16
12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16
13 C -0.15 -3.73 8.61 -39.27 -0.34 -4.06 16
14 C -0.11 -2.51 9.97 -40.00 -0.40 -2.90 16
15 C -0.22 -4.75 9.67 -39.34 -0.38 -5.13 16
16 C -0.11 -2.59 5.03 -104.52 -0.53 -3.12 16
17 C 0.14 2.73 4.04 -27.89 -0.11 2.62 16
18 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16
19 C -0.17 -2.73 9.63 37.15 0.36 -2.37 16
20 F -0.21 -4.34 13.25 2.25 0.03 -4.31 16
21 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16
22 H 0.04 0.79 6.69 -51.93 -0.35 0.44 16
23 H 0.04 0.88 7.75 -51.93 -0.40 0.48 16
24 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16
25 H 0.12 3.09 6.38 -52.48 -0.33 2.75 16
26 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16
27 H 0.09 1.75 8.05 -52.49 -0.42 1.32 16
28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16
LS Contribution 258.93 15.07 3.90 3.90
Total: -1.00 -27.86 258.93 -5.81 -33.67
By element:
Atomic # 1 Polarization: 6.29 SS G_CDS: -3.58 Total: 2.72 kcal
Atomic # 6 Polarization: -20.32 SS G_CDS: -1.59 Total: -21.91 kcal
Atomic # 7 Polarization: -20.32 SS G_CDS: 0.62 Total: -19.70 kcal
Atomic # 8 Polarization: -7.91 SS G_CDS: -0.16 Total: -8.07 kcal
Atomic # 9 Polarization: -4.34 SS G_CDS: 0.03 Total: -4.31 kcal
Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal
Total LS contribution 3.90 Total: 3.90 kcal
Total: -27.86 -5.81 -33.67 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000214718942.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.507 kcal
(2) G-P(sol) polarization free energy of solvation -27.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.669 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.175 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds