Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35645 * 116.99855 * 2 1 4 4 C 1.41349 * 120.26504 * 276.16264 * 3 2 1 5 5 C 1.41157 * 120.29003 * 359.96111 * 4 3 2 6 6 H 1.07996 * 119.99929 * 331.18769 * 5 4 3 7 7 C 1.39938 * 119.99829 * 151.18262 * 5 4 3 8 8 N 1.30866 * 120.00366 * 344.99634 * 7 5 4 9 9 Si 1.86804 * 119.99570 * 164.99492 * 7 5 4 10 10 H 1.48495 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46835 * 120.00555 * 9 7 5 12 12 H 1.48507 * 109.46817 * 240.00132 * 9 7 5 13 13 C 1.40692 * 119.42192 * 179.97438 * 4 3 2 14 14 C 1.36525 * 119.92854 * 0.02562 * 13 4 3 15 15 C 1.38785 * 120.53712 * 359.72749 * 14 13 4 16 16 C 1.38348 * 120.59021 * 0.55065 * 15 14 13 17 17 C 1.50697 * 119.97546 * 179.71908 * 16 15 14 18 18 H 1.09004 * 109.46877 * 23.27881 * 17 16 15 19 19 C 1.52993 * 109.47388 * 263.27784 * 17 16 15 20 20 F 1.39903 * 109.47051 * 143.27561 * 17 16 15 21 21 H 1.09001 * 109.46587 * 186.18109 * 1 2 3 22 22 H 1.08991 * 109.47222 * 306.18138 * 1 2 3 23 23 H 1.08998 * 109.47240 * 66.18681 * 1 2 3 24 24 H 0.96998 * 119.99948 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.03387 * 180.02562 * 13 4 3 26 26 H 1.07998 * 119.73190 * 180.02562 * 14 13 4 27 27 H 1.07994 * 119.70324 * 180.29490 * 15 14 13 28 28 H 1.09004 * 109.47348 * 64.01676 * 19 17 16 29 29 H 1.09001 * 109.47435 * 184.01879 * 19 17 16 30 30 H 1.09004 * 109.47426 * 304.01761 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.2514 1.9029 -1.2138 5 6 1.8196 1.3441 -2.4360 6 1 1.7686 0.2715 -2.5513 7 6 1.4574 2.1801 -3.4982 8 7 1.2341 3.4515 -3.2836 9 14 1.2926 1.4808 -5.2226 10 1 1.5954 0.0273 -5.1984 11 1 -0.0944 1.6890 -5.7107 12 1 2.2452 2.1705 -6.1295 13 6 2.8916 3.1556 -1.1931 14 6 3.3070 3.6888 -0.0070 15 6 3.0983 3.0074 1.1840 16 6 2.4763 1.7717 1.1885 17 6 2.2625 1.0411 2.4890 18 1 2.2629 1.7561 3.3118 19 6 3.3885 0.0260 2.6950 20 9 1.0336 0.3734 2.4523 21 1 -0.3632 -1.0217 0.1107 22 1 -0.3633 0.6066 0.8294 23 1 -0.3633 0.4149 -0.9401 24 1 0.9834 4.0310 -4.0200 25 1 3.0541 3.6948 -2.1147 26 1 3.7976 4.6508 0.0053 27 1 3.4282 3.4439 2.1151 28 1 4.3380 0.5519 2.7950 29 1 3.1961 -0.5517 3.5990 30 1 3.4337 -0.6455 1.8375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214718942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = -79.175416 kcal Electronic energy + Delta-G solvation = -15683.132903 eV Core-core repulsion = 12971.574382 eV Total energy + Delta-G solvation = -2711.558520 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.92362 -38.41371 -35.80185 -34.03777 -32.04086 -29.46402 -28.16042 -26.14801 -24.85031 -22.88271 -20.80849 -19.92073 -17.29947 -16.33922 -15.80393 -15.07384 -14.81820 -14.51851 -14.16604 -14.00328 -13.52401 -12.91145 -12.55352 -12.04662 -11.90137 -11.69079 -11.46492 -11.27549 -11.08642 -10.82162 -10.55318 -10.51775 -10.26688 -9.76892 -9.58672 -9.25967 -8.52788 -7.44700 -7.32027 -6.80508 -4.40583 2.64970 2.69071 3.05261 3.11582 3.13171 3.90375 4.49227 5.05929 5.30909 5.33993 5.46918 5.58192 5.82061 6.09990 6.25007 6.35611 6.38391 6.47325 6.52489 6.58283 6.64567 6.97515 7.10645 7.19601 7.29568 7.64790 7.85339 7.97784 8.14192 8.39767 8.69982 8.79147 9.13889 10.13154 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.035097 B = 0.010073 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.599400 B = 2779.137874 C = 3286.185077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.324 6.324 3 C -0.005 4.005 4 C 0.096 3.904 5 C -0.447 4.447 6 H 0.084 0.916 7 C 0.073 3.927 8 N -0.795 5.795 9 Si 0.909 3.091 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.272 1.272 13 C -0.145 4.145 14 C -0.109 4.109 15 C -0.218 4.218 16 C -0.114 4.114 17 C 0.143 3.857 18 H 0.072 0.928 19 C -0.166 4.166 20 F -0.211 7.211 21 H 0.066 0.934 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.281 0.719 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.036 -2.008 4.557 5.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.241 6.241 3 C -0.050 4.050 4 C 0.093 3.907 5 C -0.476 4.476 6 H 0.102 0.898 7 C -0.144 4.144 8 N -0.421 5.421 9 Si 0.734 3.266 10 H -0.182 1.182 11 H -0.200 1.200 12 H -0.197 1.197 13 C -0.165 4.165 14 C -0.128 4.128 15 C -0.237 4.237 16 C -0.115 4.115 17 C 0.107 3.893 18 H 0.090 0.910 19 C -0.224 4.224 20 F -0.192 7.192 21 H 0.084 0.916 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.136 0.864 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.003 -1.994 4.426 4.957 hybrid contribution -0.403 0.115 -0.845 0.943 sum 0.600 -1.879 3.581 4.088 Atomic orbital electron populations 1.22741 0.82244 1.00327 0.99955 1.85849 1.18100 1.25976 1.94165 1.18405 1.05177 0.90236 0.91206 1.17903 0.89641 0.91301 0.91887 1.19528 1.37927 0.94945 0.95243 0.89763 1.25957 0.92729 0.94502 1.01248 1.69830 1.32910 1.05480 1.33858 0.86232 0.78528 0.80642 0.81224 1.18235 1.19975 1.19671 1.20987 1.00578 0.97980 0.96937 1.20408 1.00824 0.98299 0.93254 1.20007 1.10943 0.95815 0.96970 1.19948 1.03525 0.95259 0.92780 1.20143 0.80183 0.92550 0.96387 0.90970 1.22278 0.98168 0.99518 1.02436 1.92763 1.45978 1.82758 1.97672 0.91570 0.94473 0.94246 0.90837 0.86402 0.88980 0.88882 0.91341 0.92524 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 10.07 101.05 1.02 1.92 16 2 O -0.32 -7.91 8.60 -18.64 -0.16 -8.07 16 3 C -0.01 -0.14 5.66 -38.34 -0.22 -0.36 16 4 C 0.10 2.56 5.54 -106.68 -0.59 1.97 16 5 C -0.45 -11.91 8.17 -37.84 -0.31 -12.22 16 6 H 0.08 2.25 7.71 -52.49 -0.40 1.85 16 7 C 0.07 1.83 5.16 -17.33 -0.09 1.74 16 8 N -0.80 -20.32 11.09 55.55 0.62 -19.70 16 9 Si 0.91 18.72 29.59 -169.99 -5.03 13.70 16 10 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 13 C -0.15 -3.73 8.61 -39.27 -0.34 -4.06 16 14 C -0.11 -2.51 9.97 -40.00 -0.40 -2.90 16 15 C -0.22 -4.75 9.67 -39.34 -0.38 -5.13 16 16 C -0.11 -2.59 5.03 -104.52 -0.53 -3.12 16 17 C 0.14 2.73 4.04 -27.89 -0.11 2.62 16 18 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 19 C -0.17 -2.73 9.63 37.15 0.36 -2.37 16 20 F -0.21 -4.34 13.25 2.25 0.03 -4.31 16 21 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 22 H 0.04 0.79 6.69 -51.93 -0.35 0.44 16 23 H 0.04 0.88 7.75 -51.93 -0.40 0.48 16 24 H 0.28 6.50 8.30 -40.82 -0.34 6.17 16 25 H 0.12 3.09 6.38 -52.48 -0.33 2.75 16 26 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.09 1.75 8.05 -52.49 -0.42 1.32 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 258.93 15.07 3.90 3.90 Total: -1.00 -27.86 258.93 -5.81 -33.67 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -3.58 Total: 2.72 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -1.59 Total: -21.91 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.62 Total: -19.70 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.16 Total: -8.07 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.03 Total: -4.31 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.86 -5.81 -33.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214718942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.507 kcal (2) G-P(sol) polarization free energy of solvation -27.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds