Wall clock time and date at job start Mon Mar 30 2020 02:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35645 * 116.99855 * 2 1 4 4 C 1.41349 * 120.26504 * 276.16264 * 3 2 1 5 5 C 1.41157 * 120.29003 * 359.96111 * 4 3 2 6 6 H 1.07996 * 119.99929 * 331.18769 * 5 4 3 7 7 C 1.39938 * 119.99829 * 151.18262 * 5 4 3 8 8 N 1.30866 * 120.00366 * 344.99634 * 7 5 4 9 9 Si 1.86804 * 119.99570 * 164.99492 * 7 5 4 10 10 H 1.48495 * 109.47208 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46835 * 120.00555 * 9 7 5 12 12 H 1.48507 * 109.46817 * 240.00132 * 9 7 5 13 13 C 1.40692 * 119.42192 * 179.97438 * 4 3 2 14 14 C 1.36525 * 119.92854 * 0.02562 * 13 4 3 15 15 C 1.38785 * 120.53712 * 359.72749 * 14 13 4 16 16 C 1.38348 * 120.59021 * 0.55065 * 15 14 13 17 17 C 1.50697 * 119.97546 * 179.71908 * 16 15 14 18 18 H 1.09004 * 109.46877 * 23.27881 * 17 16 15 19 19 C 1.52993 * 109.47388 * 263.27784 * 17 16 15 20 20 F 1.39903 * 109.47051 * 143.27561 * 17 16 15 21 21 H 1.09001 * 109.46587 * 186.18109 * 1 2 3 22 22 H 1.08991 * 109.47222 * 306.18138 * 1 2 3 23 23 H 1.08998 * 109.47240 * 66.18681 * 1 2 3 24 24 H 0.96998 * 119.99948 * 179.97438 * 8 7 5 25 25 H 1.08003 * 120.03387 * 180.02562 * 13 4 3 26 26 H 1.07998 * 119.73190 * 180.02562 * 14 13 4 27 27 H 1.07994 * 119.70324 * 180.29490 * 15 14 13 28 28 H 1.09004 * 109.47348 * 64.01676 * 19 17 16 29 29 H 1.09001 * 109.47435 * 184.01879 * 19 17 16 30 30 H 1.09004 * 109.47426 * 304.01761 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.2514 1.9029 -1.2138 5 6 1.8196 1.3441 -2.4360 6 1 1.7686 0.2715 -2.5513 7 6 1.4574 2.1801 -3.4982 8 7 1.2341 3.4515 -3.2836 9 14 1.2926 1.4808 -5.2226 10 1 1.5954 0.0273 -5.1984 11 1 -0.0944 1.6890 -5.7107 12 1 2.2452 2.1705 -6.1295 13 6 2.8916 3.1556 -1.1931 14 6 3.3070 3.6888 -0.0070 15 6 3.0983 3.0074 1.1840 16 6 2.4763 1.7717 1.1885 17 6 2.2625 1.0411 2.4890 18 1 2.2629 1.7561 3.3118 19 6 3.3885 0.0260 2.6950 20 9 1.0336 0.3734 2.4523 21 1 -0.3632 -1.0217 0.1107 22 1 -0.3633 0.6066 0.8294 23 1 -0.3633 0.4149 -0.9401 24 1 0.9834 4.0310 -4.0200 25 1 3.0541 3.6948 -2.1147 26 1 3.7976 4.6508 0.0053 27 1 3.4282 3.4439 2.1151 28 1 4.3380 0.5519 2.7950 29 1 3.1961 -0.5517 3.5990 30 1 3.4337 -0.6455 1.8375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214718942.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:43 Heat of formation + Delta-G solvation = -94.237093 kcal Electronic energy + Delta-G solvation = -15683.786026 eV Core-core repulsion = 12971.574382 eV Total energy + Delta-G solvation = -2712.211644 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.46378 -40.24255 -37.63670 -35.85931 -33.66240 -31.31259 -29.80854 -27.94957 -26.70805 -24.46284 -22.63140 -21.66731 -19.13776 -18.16174 -17.51707 -16.79163 -16.46982 -16.18209 -15.92202 -15.62691 -15.26338 -14.64874 -14.29394 -13.62472 -13.45283 -13.37919 -12.98869 -12.96926 -12.80350 -12.54833 -12.27881 -12.20965 -11.82628 -11.53939 -11.33199 -11.09338 -10.36816 -9.30863 -9.17000 -8.65911 -6.37002 0.81268 0.88944 1.35200 1.45486 1.50120 2.18485 2.64281 3.23501 3.70296 3.81948 3.93098 4.10851 4.35067 4.54214 4.64004 4.69580 4.82444 4.84824 4.86622 4.99595 5.08233 5.24347 5.27105 5.38754 5.47309 5.82561 6.00030 6.08762 6.28242 6.47897 6.78956 6.86714 7.26561 8.29893 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.035097 B = 0.010073 C = 0.008518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.599400 B = 2779.137874 C = 3286.185077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.337 6.337 3 C -0.028 4.028 4 C 0.062 3.938 5 C -0.481 4.481 6 H 0.068 0.932 7 C 0.036 3.964 8 N -0.825 5.825 9 Si 0.979 3.021 10 H -0.263 1.263 11 H -0.265 1.265 12 H -0.261 1.261 13 C -0.170 4.170 14 C -0.112 4.112 15 C -0.208 4.208 16 C -0.122 4.122 17 C 0.137 3.863 18 H 0.107 0.893 19 C -0.159 4.159 20 F -0.222 7.222 21 H 0.098 0.902 22 H 0.037 0.963 23 H 0.020 0.980 24 H 0.289 0.711 25 H 0.102 0.898 26 H 0.121 0.879 27 H 0.135 0.865 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 -1.926 5.853 6.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.253 6.253 3 C -0.072 4.072 4 C 0.059 3.941 5 C -0.511 4.511 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.452 5.452 9 Si 0.800 3.200 10 H -0.186 1.186 11 H -0.190 1.190 12 H -0.185 1.185 13 C -0.190 4.190 14 C -0.130 4.130 15 C -0.227 4.227 16 C -0.123 4.123 17 C 0.102 3.898 18 H 0.125 0.875 19 C -0.217 4.217 20 F -0.203 7.203 21 H 0.116 0.884 22 H 0.056 0.944 23 H 0.038 0.962 24 H 0.100 0.900 25 H 0.120 0.880 26 H 0.139 0.861 27 H 0.152 0.848 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.399 -1.906 5.740 6.208 hybrid contribution -0.506 0.115 -1.102 1.218 sum 0.893 -1.791 4.638 5.052 Atomic orbital electron populations 1.22809 0.80977 1.02217 0.98872 1.85799 1.19355 1.26000 1.94194 1.18734 1.06014 0.90549 0.91923 1.18281 0.90588 0.92402 0.92834 1.19570 1.40330 0.94405 0.96778 0.91371 1.26710 0.91823 0.94695 1.04660 1.69863 1.33485 1.06520 1.35283 0.85201 0.78996 0.79526 0.76283 1.18628 1.18958 1.18494 1.20972 1.02237 0.98132 0.97614 1.20765 1.00058 0.99403 0.92769 1.20485 1.08991 0.95118 0.98119 1.20429 1.02383 0.95713 0.93737 1.20443 0.80466 0.93673 0.95268 0.87491 1.22229 0.97991 0.98838 1.02619 1.92739 1.46871 1.83044 1.97632 0.88368 0.94436 0.96178 0.90045 0.88014 0.86123 0.84753 0.89573 0.89671 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.98 10.07 113.37 1.14 3.12 16 2 O -0.34 -16.62 8.60 -89.60 -0.77 -17.39 16 3 C -0.03 -1.41 5.66 23.08 0.13 -1.28 16 4 C 0.06 3.40 5.54 -21.20 -0.12 3.29 16 5 C -0.48 -26.75 8.17 23.40 0.19 -26.56 16 6 H 0.07 3.85 7.71 -2.91 -0.02 3.82 16 7 C 0.04 1.83 5.16 85.25 0.44 2.27 16 8 N -0.83 -43.27 11.09 21.83 0.24 -43.03 16 9 Si 0.98 39.16 29.59 68.60 2.03 41.19 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 11 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 12 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 13 C -0.17 -8.89 8.61 22.47 0.19 -8.69 16 14 C -0.11 -4.98 9.97 22.00 0.22 -4.76 16 15 C -0.21 -8.50 9.67 22.43 0.22 -8.29 16 16 C -0.12 -5.32 5.03 -19.80 -0.10 -5.42 16 17 C 0.14 4.82 4.04 29.84 0.12 4.94 16 18 H 0.11 3.05 8.04 -2.38 -0.02 3.03 16 19 C -0.16 -4.74 9.63 71.98 0.69 -4.05 16 20 F -0.22 -8.68 13.25 44.97 0.60 -8.08 16 21 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 22 H 0.04 1.58 6.69 -2.39 -0.02 1.57 16 23 H 0.02 0.91 7.75 -2.39 -0.02 0.90 16 24 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 25 H 0.10 5.53 6.38 -2.91 -0.02 5.51 16 26 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.13 4.36 8.05 -2.91 -0.02 4.34 16 28 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 Total: -1.00 -61.53 258.93 6.36 -55.18 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.13 Total: 17.56 kcal Atomic # 6 Polarization: -48.56 SS G_CDS: 3.13 Total: -45.43 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.24 Total: -43.03 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.77 Total: -17.39 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 0.60 Total: -8.08 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.19 kcal Total: -61.53 6.36 -55.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214718942.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.061 kcal (2) G-P(sol) polarization free energy of solvation -61.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds