Wall clock time and date at job start Mon Mar 30 2020 03:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31030 * 1 3 3 Si 1.86799 * 119.99784 * 2 1 4 4 H 1.48504 * 109.47076 * 269.99936 * 3 2 1 5 5 H 1.48498 * 109.47265 * 30.00434 * 3 2 1 6 6 H 1.48498 * 109.46680 * 150.00313 * 3 2 1 7 7 C 1.39696 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.41602 * 120.00034 * 359.97438 * 7 2 1 10 10 C 1.41884 * 126.55485 * 0.02782 * 9 7 2 11 11 N 1.30320 * 108.03959 * 179.72076 * 10 9 7 12 12 N 1.39871 * 109.23559 * 0.40430 * 11 10 9 13 13 C 1.46506 * 125.67713 * 179.84459 * 12 11 10 14 14 H 1.09004 * 110.01447 * 25.39826 * 13 12 11 15 15 C 1.53873 * 110.03212 * 264.00257 * 13 12 11 16 16 C 1.54269 * 106.60003 * 240.71328 * 15 13 12 17 17 C 1.54893 * 104.19146 * 23.60995 * 16 15 13 18 18 H 1.09002 * 110.75295 * 80.37816 * 17 16 15 19 19 F 1.39898 * 110.75530 * 203.74060 * 17 16 15 20 20 C 1.54268 * 110.02938 * 146.78463 * 13 12 11 21 21 C 1.34506 * 108.64748 * 359.58388 * 12 11 10 22 22 H 0.96997 * 119.99944 * 359.97438 * 1 2 3 23 23 H 1.07989 * 125.97881 * 359.93746 * 10 9 7 24 24 H 1.08997 * 110.03237 * 0.02562 * 15 13 12 25 25 H 1.09007 * 110.02793 * 121.38090 * 15 13 12 26 26 H 1.08996 * 110.48394 * 142.28892 * 16 15 13 27 27 H 1.08995 * 110.48759 * 264.94100 * 16 15 13 28 28 H 1.09004 * 110.48391 * 214.35583 * 20 13 12 29 29 H 1.09002 * 110.48974 * 336.99851 * 20 13 12 30 30 H 1.07999 * 126.40779 * 180.26197 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4417 2.6526 0.7001 6 1 3.5418 1.4401 0.7000 7 6 2.0088 -1.2098 -0.0005 8 1 3.0887 -1.2098 -0.0010 9 6 1.3008 -2.4361 -0.0005 10 6 -0.1088 -2.5981 -0.0006 11 7 -0.3683 -3.8752 -0.0066 12 7 0.8341 -4.5897 -0.0014 13 6 0.9607 -6.0493 -0.0023 14 1 0.0734 -6.5004 -0.4465 15 6 1.1495 -6.5629 1.4358 16 6 2.5160 -7.2780 1.4726 17 6 3.3064 -6.6472 0.2993 18 1 3.7237 -5.6828 0.5891 19 9 4.3134 -7.5122 -0.1418 20 6 2.2183 -6.4701 -0.7904 21 6 1.8549 -3.7139 -0.0011 22 1 -0.4850 0.8400 0.0004 23 1 -0.8388 -1.8023 0.0003 24 1 1.1465 -5.7264 2.1345 25 1 0.3537 -7.2634 1.6896 26 1 3.0211 -7.0869 2.4193 27 1 2.3903 -8.3492 1.3154 28 1 2.0442 -7.4110 -1.3126 29 1 2.5062 -5.6895 -1.4947 30 1 2.9074 -3.9561 -0.0016 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214724164.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:04 Heat of formation + Delta-G solvation = 10.312217 kcal Electronic energy + Delta-G solvation = -15185.463032 eV Core-core repulsion = 12510.077737 eV Total energy + Delta-G solvation = -2675.385294 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.49168 -39.57448 -37.03252 -33.38007 -30.58220 -29.10521 -28.36385 -26.92266 -24.51058 -21.05056 -20.86086 -19.57863 -18.59101 -17.38196 -16.28880 -16.02082 -15.01973 -14.72894 -14.49988 -13.67211 -13.36058 -13.30644 -12.90472 -12.38939 -12.10262 -11.52232 -11.23755 -11.17159 -11.09877 -10.98988 -10.71911 -10.55414 -10.48114 -10.35554 -9.98874 -9.22822 -8.82033 -7.80497 -7.15921 -6.42635 -3.99385 3.04796 3.20490 3.24315 3.41316 3.80175 4.14190 4.39648 4.42813 4.48179 4.63018 5.00985 5.31953 5.41272 5.42276 5.52685 5.61009 5.77082 5.80731 5.96854 6.08471 6.19880 6.38340 6.49048 6.88593 7.33007 7.52477 7.68698 8.15656 8.55656 8.66247 9.06653 9.17672 9.51845 10.56884 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.041582 B = 0.007080 C = 0.006378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.209322 B = 3953.972847 C = 4388.709722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.438 4.438 8 H 0.067 0.933 9 C -0.018 4.018 10 C 0.031 3.969 11 N -0.340 5.340 12 N -0.389 5.389 13 C 0.177 3.823 14 H 0.092 0.908 15 C -0.135 4.135 16 C -0.144 4.144 17 C 0.080 3.920 18 H 0.098 0.902 19 F -0.214 7.214 20 C -0.155 4.155 21 C -0.125 4.125 22 H 0.273 0.727 23 H 0.202 0.798 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.410 -9.504 1.259 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.473 4.473 8 H 0.086 0.914 9 C -0.028 4.028 10 C -0.156 4.156 11 N -0.162 5.162 12 N -0.178 5.178 13 C 0.072 3.928 14 H 0.110 0.890 15 C -0.174 4.174 16 C -0.182 4.182 17 C 0.044 3.956 18 H 0.116 0.884 19 F -0.195 7.195 20 C -0.194 4.194 21 C -0.265 4.265 22 H 0.084 0.916 23 H 0.218 0.782 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.393 -10.324 1.244 10.670 hybrid contribution 1.210 1.373 -0.011 1.830 sum 3.603 -8.951 1.234 9.728 Atomic orbital electron populations 1.69453 1.07098 1.27894 1.43013 1.25636 0.94779 1.00579 0.93402 0.86224 0.79936 0.81134 0.78688 1.19997 1.20629 1.19197 1.18735 0.93585 0.89131 1.45816 0.91429 1.18216 0.91819 0.91619 1.01148 1.25100 0.98053 0.91856 1.00614 1.76562 1.05822 1.07064 1.26710 1.47522 1.04105 1.03038 1.63180 1.21158 0.97906 0.78847 0.94883 0.88998 1.22627 0.96318 1.00720 0.97692 1.22894 0.96248 1.00551 0.98495 1.22745 0.85606 0.92496 0.94735 0.88425 1.92771 1.63192 1.72580 1.90959 1.23284 0.94481 1.03409 0.98249 1.22047 0.92178 0.89819 1.22421 0.91596 0.78171 0.90102 0.90671 0.90524 0.90406 0.89355 0.89070 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.35 10.33 55.54 0.57 -21.78 16 2 C 0.07 1.72 5.49 -17.35 -0.10 1.63 16 3 Si 0.91 19.67 29.56 -169.99 -5.02 14.65 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.44 -11.95 9.40 -37.76 -0.35 -12.30 16 8 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 9 C -0.02 -0.49 5.93 -106.83 -0.63 -1.13 16 10 C 0.03 0.84 10.91 -16.80 -0.18 0.66 16 11 N -0.34 -8.56 12.47 30.97 0.39 -8.17 16 12 N -0.39 -8.56 3.40 -52.82 -0.18 -8.74 16 13 C 0.18 2.93 3.99 -66.81 -0.27 2.66 16 14 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 15 C -0.13 -1.91 6.60 -25.61 -0.17 -2.08 16 16 C -0.14 -1.75 6.63 -25.07 -0.17 -1.92 16 17 C 0.08 1.11 4.49 -24.67 -0.11 1.00 16 18 H 0.10 1.41 6.71 -51.93 -0.35 1.06 16 19 F -0.21 -3.12 17.22 2.25 0.04 -3.08 16 20 C -0.16 -2.24 5.73 -25.01 -0.14 -2.38 16 21 C -0.13 -2.96 10.12 -16.00 -0.16 -3.12 16 22 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 23 H 0.20 5.54 5.77 -52.49 -0.30 5.23 16 24 H 0.08 1.34 7.92 -51.93 -0.41 0.93 16 25 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.09 1.46 7.32 -51.93 -0.38 1.08 16 30 H 0.14 2.88 6.35 -52.49 -0.33 2.55 16 LS Contribution 254.51 15.07 3.84 3.84 Total: -1.00 -28.84 254.51 -6.09 -34.93 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.44 Total: 5.34 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.28 Total: -16.99 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.78 Total: -38.69 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.84 -6.09 -34.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214724164.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.242 kcal (2) G-P(sol) polarization free energy of solvation -28.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds