Wall clock time and date at job start Mon Mar 30 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47348 * 2 1 4 4 O 1.42905 * 109.47036 * 120.00229 * 2 1 3 5 5 C 1.35925 * 117.00453 * 83.38451 * 4 2 1 6 6 C 1.39235 * 119.89776 * 175.12271 * 5 4 2 7 7 C 1.38403 * 120.48488 * 179.97438 * 6 5 4 8 8 C 1.37989 * 120.26964 * 0.02562 * 7 6 5 9 9 F 1.35106 * 120.10847 * 179.97438 * 8 7 6 10 10 C 1.40990 * 119.78733 * 359.97438 * 8 7 6 11 11 C 1.41286 * 120.23910 * 180.02562 * 10 8 7 12 12 H 1.07998 * 119.99819 * 28.51574 * 11 10 8 13 13 C 1.39927 * 119.99793 * 208.51301 * 11 10 8 14 14 N 1.30845 * 120.00373 * 10.71497 * 13 11 10 15 15 Si 1.86800 * 119.99955 * 190.71299 * 13 11 10 16 16 H 1.48505 * 109.46993 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47289 * 120.00058 * 15 13 11 18 18 H 1.48498 * 109.47252 * 240.00485 * 15 13 11 19 19 C 1.38000 * 119.89363 * 354.84401 * 5 4 2 20 20 H 1.09005 * 109.47437 * 299.99839 * 1 2 3 21 21 H 1.09003 * 109.47615 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47325 * 59.99987 * 1 2 3 23 23 H 1.09003 * 109.46966 * 239.99563 * 2 1 3 24 24 H 1.08996 * 109.46934 * 60.00277 * 3 2 1 25 25 H 1.09001 * 109.46801 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46627 * 299.99799 * 3 2 1 27 27 H 1.07999 * 119.75547 * 359.97438 * 6 5 4 28 28 H 1.07999 * 119.86605 * 180.02562 * 7 6 5 29 29 H 0.97003 * 120.00473 * 179.97438 * 14 13 11 30 30 H 1.07994 * 120.13676 * 359.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0062 -0.6737 1.1668 5 6 2.0804 -2.0297 1.1095 6 6 2.6309 -2.7403 2.1728 7 6 2.7120 -4.1212 2.1275 8 6 2.2475 -4.8094 1.0253 9 9 2.3287 -6.1574 0.9843 10 6 1.6879 -4.1014 -0.0579 11 6 1.2090 -4.7964 -1.1909 12 1 0.8376 -5.8053 -1.0883 13 6 1.2158 -4.1775 -2.4458 14 7 1.8515 -3.0463 -2.6141 15 14 0.3173 -4.9663 -3.8811 16 1 -0.3180 -6.2314 -3.4324 17 1 -0.7284 -4.0380 -4.3809 18 1 1.2835 -5.2565 -4.9708 19 6 1.6046 -2.6983 -0.0001 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 -0.8899 23 1 1.8932 -0.5139 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8900 27 1 2.9973 -2.2099 3.0393 28 1 3.1405 -4.6623 2.9581 29 1 1.8565 -2.6175 -3.4841 30 1 1.1734 -2.1463 -0.8221 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223609909.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:01 Heat of formation + Delta-G solvation = -96.993984 kcal Electronic energy + Delta-G solvation = -15389.103080 eV Core-core repulsion = 12676.771888 eV Total energy + Delta-G solvation = -2712.331192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.17093 -40.72497 -38.06424 -35.68534 -33.81650 -31.69530 -29.92698 -28.06218 -27.32939 -23.96137 -22.82732 -21.46228 -19.75541 -18.21365 -17.85363 -17.13759 -16.59446 -16.24701 -15.89277 -15.33513 -15.25535 -14.53881 -14.17791 -13.89159 -13.64810 -13.38672 -13.34670 -13.00996 -12.98911 -12.66492 -12.45863 -12.28297 -12.02125 -11.77061 -11.39720 -11.22893 -11.00751 -9.53868 -8.84413 -8.57354 -6.51776 0.78878 0.85411 1.35755 1.45078 1.50626 2.17292 2.51764 2.63495 3.45709 3.99619 4.04143 4.10391 4.29719 4.33172 4.58218 4.69850 4.76129 4.85371 4.91205 4.97269 5.04673 5.18313 5.26031 5.29392 5.33710 5.61193 5.77188 5.97903 6.09034 6.39530 6.62978 6.74452 6.96065 8.25114 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.020240 B = 0.012577 C = 0.008233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.094443 B = 2225.829957 C = 3400.133033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.066 3.934 3 C -0.135 4.135 4 O -0.327 6.327 5 C 0.125 3.875 6 C -0.242 4.242 7 C -0.089 4.089 8 C -0.086 4.086 9 F -0.170 7.170 10 C 0.080 3.920 11 C -0.491 4.491 12 H 0.071 0.929 13 C 0.039 3.961 14 N -0.818 5.818 15 Si 0.985 3.015 16 H -0.264 1.264 17 H -0.256 1.256 18 H -0.263 1.263 19 C -0.241 4.241 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.086 0.914 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.134 0.866 28 H 0.140 0.860 29 H 0.292 0.708 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.956 6.850 0.238 7.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 C -0.192 4.192 4 O -0.242 6.242 5 C 0.080 3.920 6 C -0.261 4.261 7 C -0.108 4.108 8 C -0.106 4.106 9 F -0.150 7.150 10 C 0.077 3.923 11 C -0.520 4.520 12 H 0.089 0.911 13 C -0.176 4.176 14 N -0.444 5.444 15 Si 0.805 3.195 16 H -0.188 1.188 17 H -0.180 1.180 18 H -0.187 1.187 19 C -0.261 4.261 20 H 0.091 0.909 21 H 0.057 0.943 22 H 0.105 0.895 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.152 0.848 28 H 0.158 0.842 29 H 0.103 0.897 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.838 7.120 0.213 7.356 hybrid contribution -0.242 -0.937 -0.772 1.238 sum -2.080 6.183 -0.559 6.547 Atomic orbital electron populations 1.22287 0.94894 1.01929 1.03595 1.22578 0.94889 0.94428 0.87136 1.21805 1.01675 0.91756 1.03989 1.85942 1.81764 1.16407 1.40123 1.19068 0.95940 0.82252 0.94758 1.19864 1.13729 0.92345 1.00192 1.20612 0.99730 0.93968 0.96448 1.18205 1.14946 0.76453 1.00960 1.91230 1.95698 1.30810 1.97219 1.17818 0.89904 0.92875 0.91753 1.19707 1.38179 1.01200 0.92894 0.91119 1.26705 0.93534 0.94932 1.02473 1.69811 1.31646 1.16283 1.26642 0.85106 0.78703 0.79273 0.76369 1.18763 1.17968 1.18737 1.21413 1.11090 0.94266 0.99373 0.90890 0.94346 0.89482 0.92395 0.90838 0.92235 0.88610 0.84848 0.84237 0.89686 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.41 9.13 71.98 0.66 -4.75 16 2 C 0.07 2.32 2.85 30.59 0.09 2.41 16 3 C -0.14 -3.49 9.56 71.98 0.69 -2.80 16 4 O -0.33 -13.72 9.81 -92.71 -0.91 -14.63 16 5 C 0.12 5.94 6.58 22.45 0.15 6.09 16 6 C -0.24 -10.82 9.99 22.55 0.23 -10.59 16 7 C -0.09 -4.07 10.00 22.25 0.22 -3.85 16 8 C -0.09 -4.55 7.31 22.89 0.17 -4.38 16 9 F -0.17 -8.99 16.75 44.97 0.75 -8.24 16 10 C 0.08 4.46 5.55 -21.26 -0.12 4.34 16 11 C -0.49 -27.29 8.76 23.43 0.21 -27.09 16 12 H 0.07 3.95 7.76 -2.91 -0.02 3.93 16 13 C 0.04 1.95 5.25 85.25 0.45 2.40 16 14 N -0.82 -41.17 10.84 21.82 0.24 -40.93 16 15 Si 0.99 37.94 29.57 68.60 2.03 39.97 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.26 -9.14 7.11 99.48 0.71 -8.43 16 18 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 19 C -0.24 -12.56 6.77 22.81 0.15 -12.40 16 20 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 21 H 0.04 1.44 6.74 -2.39 -0.02 1.43 16 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.06 2.37 6.39 -2.39 -0.02 2.35 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.14 5.36 8.06 -2.91 -0.02 5.34 16 29 H 0.29 13.04 8.30 -92.71 -0.77 12.27 16 30 H 0.14 7.19 3.50 -2.91 -0.01 7.18 16 Total: -1.00 -60.45 259.57 6.14 -54.31 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.14 Total: 20.14 kcal Atomic # 6 Polarization: -53.51 SS G_CDS: 2.89 Total: -50.63 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.24 Total: -40.93 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.91 Total: -14.63 kcal Atomic # 9 Polarization: -8.99 SS G_CDS: 0.75 Total: -8.24 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -60.45 6.14 -54.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223609909.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.680 kcal (2) G-P(sol) polarization free energy of solvation -60.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds