Wall clock time and date at job start Mon Mar 30 2020 03:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47309 * 2 1 4 4 C 1.46507 * 120.00134 * 89.99536 * 3 2 1 5 5 C 1.50697 * 109.47006 * 270.00373 * 4 3 2 6 6 H 1.07991 * 120.00449 * 359.72165 * 5 4 3 7 7 C 1.37885 * 119.99686 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 4 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 C 1.39173 * 120.00190 * 270.00131 * 3 2 1 14 14 C 1.39565 * 120.85384 * 179.72184 * 13 3 2 15 15 C 1.37803 * 119.12941 * 179.70430 * 14 13 3 16 16 N 1.32054 * 120.87478 * 0.57589 * 15 14 13 17 17 C 1.32152 * 121.87343 * 359.71773 * 16 15 14 18 18 F 1.35096 * 119.61327 * 179.97438 * 17 16 15 19 19 C 1.38255 * 120.77747 * 359.97438 * 17 16 15 20 20 H 1.09003 * 109.47121 * 300.00263 * 1 2 3 21 21 H 1.09001 * 109.47048 * 60.00241 * 1 2 3 22 22 H 1.08998 * 109.47302 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47298 * 239.99748 * 2 1 3 24 24 H 1.09008 * 109.46760 * 120.00016 * 2 1 3 25 25 H 1.08998 * 109.47049 * 149.99802 * 4 3 2 26 26 H 1.09001 * 109.46896 * 30.00073 * 4 3 2 27 27 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 28 28 H 1.07999 * 120.43561 * 359.97390 * 14 13 3 29 29 H 1.08004 * 119.55906 * 180.31978 * 15 14 13 30 30 H 1.07998 * 120.47208 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 1.2688 5 6 1.0066 2.7822 1.7037 6 1 0.1171 2.7287 1.0937 7 6 0.9948 3.5049 2.8780 8 7 2.0780 3.5696 3.6211 9 14 -0.5596 4.3918 3.4132 10 1 -1.6301 4.1638 2.4097 11 1 -0.9979 3.8698 4.7325 12 1 -0.2861 5.8473 3.5228 13 6 2.2503 2.0373 -1.2053 14 6 2.7100 3.3549 -1.2260 15 6 2.9337 3.9683 -2.4396 16 7 2.7081 3.3299 -3.5733 17 6 2.2672 2.0843 -3.5970 18 9 2.0513 1.4750 -4.7833 19 6 2.0242 1.3974 -2.4220 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8901 25 1 3.0644 2.7985 1.1385 26 1 2.5505 1.3452 2.0284 27 1 2.0695 4.0777 4.4474 28 1 2.8923 3.8853 -0.3031 29 1 3.2944 4.9860 -2.4637 30 1 1.6636 0.3797 -2.4472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227642389.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:29 Heat of formation + Delta-G solvation = -23.420893 kcal Electronic energy + Delta-G solvation = -15179.907509 eV Core-core repulsion = 12503.059437 eV Total energy + Delta-G solvation = -2676.848072 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.93260 -41.03793 -38.20136 -34.91613 -32.93268 -32.06660 -30.85490 -28.59964 -25.21860 -24.90594 -23.56667 -21.85080 -18.91853 -18.66067 -18.05872 -17.28971 -16.94926 -16.66543 -16.01880 -15.57113 -15.15538 -15.05424 -14.38030 -14.22036 -13.98462 -13.74197 -13.39000 -13.02792 -12.95475 -12.74722 -12.36355 -12.15003 -11.91707 -11.57103 -11.24298 -10.62380 -10.55750 -9.91776 -8.62482 -8.12581 -6.34690 0.14817 0.56023 1.37376 1.41372 1.51013 2.21068 2.41599 2.81710 2.85243 3.08840 3.76130 3.98394 4.16472 4.20715 4.42350 4.47542 4.58009 4.76643 4.81092 4.95280 4.98796 5.07921 5.20594 5.28482 5.44278 5.67919 5.76453 6.05325 6.31351 6.60792 6.80289 6.90547 7.36087 8.84083 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.031345 B = 0.008225 C = 0.007409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.068662 B = 3403.274136 C = 3778.457792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.597 5.597 4 C 0.260 3.740 5 C -0.534 4.534 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.278 3.722 14 C -0.261 4.261 15 C 0.168 3.832 16 N -0.587 5.587 17 C 0.326 3.674 18 F -0.121 7.121 19 C -0.285 4.285 20 H 0.043 0.957 21 H 0.045 0.955 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.022 0.978 26 H 0.020 0.980 27 H 0.267 0.733 28 H 0.133 0.867 29 H 0.189 0.811 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.565 -4.642 -7.575 8.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.301 5.301 4 C 0.140 3.860 5 C -0.573 4.573 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.197 1.197 11 H -0.204 1.204 12 H -0.205 1.205 13 C 0.161 3.839 14 C -0.287 4.287 15 C 0.015 3.985 16 N -0.308 5.308 17 C 0.173 3.827 18 F -0.101 7.101 19 C -0.313 4.313 20 H 0.062 0.938 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.151 0.849 29 H 0.206 0.794 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.393 -4.313 -7.995 9.093 hybrid contribution -0.893 0.096 1.246 1.536 sum -1.286 -4.217 -6.749 8.062 Atomic orbital electron populations 1.22134 0.95877 1.02498 1.01530 1.21617 0.94838 0.81392 1.03158 1.47213 1.65949 1.13576 1.03371 1.19009 0.95696 0.91838 0.79504 1.21731 0.98234 1.31029 1.06301 0.92812 1.25650 0.99002 0.97046 0.96483 1.70017 1.29220 1.42358 1.14699 0.85561 0.79913 0.78438 0.78095 1.19661 1.20421 1.20498 1.18053 0.88283 0.91254 0.86312 1.21895 1.10606 0.95492 1.00707 1.22478 0.91843 0.99485 0.84700 1.67042 1.21547 1.09141 1.33047 1.17870 0.95707 0.88720 0.80375 1.91549 1.91933 1.81288 1.45293 1.21146 1.16620 1.03828 0.89657 0.93781 0.93562 0.89529 0.89072 0.90385 0.95987 0.96212 0.92428 0.84896 0.79377 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 10.24 71.98 0.74 -4.07 16 2 C 0.11 3.43 5.95 86.38 0.51 3.95 16 3 N -0.60 -22.98 2.58 -701.06 -1.81 -24.78 16 4 C 0.26 12.15 4.98 85.63 0.43 12.58 16 5 C -0.53 -27.26 8.92 25.60 0.23 -27.03 16 6 H 0.05 2.80 7.43 -2.92 -0.02 2.78 16 7 C 0.02 0.94 5.46 84.66 0.46 1.40 16 8 N -0.92 -50.72 13.29 21.45 0.28 -50.44 16 9 Si 0.95 41.81 29.54 68.60 2.03 43.83 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.28 10.30 6.57 38.56 0.25 10.55 16 14 C -0.26 -9.65 9.26 22.49 0.21 -9.44 16 15 C 0.17 5.47 11.17 84.56 0.94 6.41 16 16 N -0.59 -20.67 10.37 -197.24 -2.05 -22.71 16 17 C 0.33 11.15 8.40 84.65 0.71 11.86 16 18 F -0.12 -3.92 17.29 44.97 0.78 -3.14 16 19 C -0.28 -9.36 9.24 22.54 0.21 -9.15 16 20 H 0.04 1.57 7.27 -2.39 -0.02 1.55 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.09 1.96 8.14 -2.39 -0.02 1.95 16 23 H 0.09 2.28 6.26 -2.39 -0.01 2.27 16 24 H 0.08 2.32 7.89 -2.38 -0.02 2.30 16 25 H 0.02 1.10 6.27 -2.39 -0.01 1.09 16 26 H 0.02 0.98 7.89 -2.39 -0.02 0.96 16 27 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 28 H 0.13 5.33 6.28 -2.91 -0.02 5.31 16 29 H 0.19 4.74 8.06 -2.91 -0.02 4.71 16 30 H 0.16 4.36 6.27 -2.91 -0.02 4.34 16 Total: -1.00 -57.17 262.79 5.07 -52.10 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.14 Total: 8.09 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.69 Total: -2.95 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.57 Total: -97.93 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -57.17 5.07 -52.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227642389.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.674 kcal (2) G-P(sol) polarization free energy of solvation -57.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds