Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99808 * 2 1 4 4 H 1.08998 * 109.47158 * 30.00044 * 3 2 1 5 5 C 1.50701 * 109.47281 * 269.99760 * 3 2 1 6 6 N 1.30454 * 126.07067 * 314.98050 * 5 3 2 7 7 O 1.21284 * 110.68392 * 179.97438 * 6 5 3 8 8 C 1.34750 * 109.53295 * 359.97438 * 7 6 5 9 9 C 1.40334 * 126.79649 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00150 * 180.02562 * 9 8 7 11 11 C 1.40469 * 119.99608 * 0.05501 * 9 8 7 12 12 N 1.30503 * 120.00134 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99793 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47254 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47389 * 119.99852 * 13 11 9 16 16 H 1.48505 * 109.47002 * 239.99929 * 13 11 9 17 17 N 1.33336 * 106.41285 * 0.02562 * 8 7 6 18 18 C 1.52998 * 109.46975 * 150.00227 * 3 2 1 19 19 C 1.52998 * 117.50092 * 8.73994 * 18 3 2 20 20 C 1.53005 * 117.49818 * 300.08438 * 18 3 2 21 21 H 1.09004 * 109.47045 * 60.00033 * 1 2 3 22 22 H 1.09001 * 109.46960 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47153 * 300.00035 * 1 2 3 24 24 H 0.96996 * 120.00214 * 179.97438 * 12 11 9 25 25 H 1.08995 * 115.55422 * 154.42041 * 18 3 2 26 26 H 1.09008 * 117.49829 * 0.02562 * 19 18 3 27 27 H 1.09000 * 117.49936 * 145.02310 * 19 18 3 28 28 H 1.08998 * 117.50239 * 214.98562 * 20 18 3 29 29 H 1.09007 * 117.49784 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 7 2.7144 1.0529 -2.3934 7 8 2.7517 1.6974 -3.4202 8 6 2.2599 2.9316 -3.1956 9 6 2.1358 3.9701 -4.1313 10 1 1.7239 4.9220 -3.8301 11 6 2.5467 3.7713 -5.4597 12 7 3.0443 2.6210 -5.8236 13 14 2.3822 5.1538 -6.7051 14 1 1.7939 6.3471 -6.0453 15 1 3.7226 5.4964 -7.2444 16 1 1.4986 4.7170 -7.8158 17 7 1.9154 2.9714 -1.9081 18 6 3.3589 1.2632 0.7212 19 6 3.9152 -0.1110 1.0992 20 6 3.3638 0.8167 2.1846 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.3277 2.4836 -6.7410 25 1 4.0735 2.0320 0.4273 26 1 3.3206 -0.9851 0.8336 27 1 4.9959 -0.2462 1.0542 28 1 4.0818 1.2914 2.8533 29 1 2.4061 0.5534 2.6337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234759939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = 27.284357 kcal Electronic energy + Delta-G solvation = -15279.782073 eV Core-core repulsion = 12592.759957 eV Total energy + Delta-G solvation = -2687.022117 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.01390 -38.45622 -35.71596 -34.10131 -33.50046 -30.58076 -27.83562 -26.41697 -25.69594 -22.10976 -21.62285 -21.29511 -19.93667 -17.91456 -16.02811 -15.85930 -15.64139 -15.42206 -15.17913 -14.36529 -14.20128 -13.39714 -12.98621 -12.48708 -11.73934 -11.57102 -11.48903 -11.32498 -11.19064 -11.06152 -10.49501 -10.21497 -10.08364 -9.94717 -9.79395 -9.50505 -9.34690 -8.90377 -8.26242 -7.07601 -5.01062 2.78178 2.96325 3.03938 3.28289 3.73548 3.81833 3.91890 4.30201 4.90071 5.01437 5.17282 5.26858 5.37517 5.49596 5.53335 5.71390 5.73310 5.86369 5.93711 6.01148 6.21512 6.39686 6.44735 6.59254 6.85513 7.34677 7.53389 7.91135 8.11574 8.32929 8.47829 9.91829 10.41196 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.051389 B = 0.006789 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.728645 B = 4123.429333 C = 4235.619293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.223 3.777 4 H 0.080 0.920 5 C 0.133 3.867 6 N -0.442 5.442 7 O 0.048 5.952 8 C 0.300 3.700 9 C -0.417 4.417 10 H 0.112 0.888 11 C 0.071 3.929 12 N -0.764 5.764 13 Si 0.936 3.064 14 H -0.255 1.255 15 H -0.269 1.269 16 H -0.269 1.269 17 N -0.613 5.613 18 C -0.143 4.143 19 C -0.158 4.158 20 C -0.177 4.177 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.039 0.961 24 H 0.291 0.709 25 H 0.112 0.888 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.353 -1.095 6.563 6.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.288 6.288 3 C 0.164 3.836 4 H 0.098 0.902 5 C -0.142 4.142 6 N -0.169 5.169 7 O -0.001 6.001 8 C 0.109 3.891 9 C -0.455 4.455 10 H 0.130 0.870 11 C -0.154 4.154 12 N -0.391 5.391 13 Si 0.758 3.242 14 H -0.179 1.179 15 H -0.194 1.194 16 H -0.194 1.194 17 N -0.359 5.359 18 C -0.163 4.163 19 C -0.195 4.195 20 C -0.214 4.214 21 H 0.060 0.940 22 H 0.101 0.899 23 H 0.057 0.943 24 H 0.103 0.897 25 H 0.130 0.870 26 H 0.124 0.876 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.069 -2.012 6.850 7.219 hybrid contribution -0.221 0.916 -0.913 1.312 sum -1.290 -1.096 5.937 6.173 Atomic orbital electron populations 1.22743 0.81460 1.02167 1.00006 1.87906 1.19304 1.27007 1.94602 1.19257 0.93344 0.83914 0.87115 0.90181 1.25246 1.01345 0.89702 0.97859 1.74354 1.26342 1.21770 0.94481 1.85569 1.64466 1.22285 1.27828 1.24235 0.88854 0.86033 0.89932 1.18594 1.38400 0.97436 0.91097 0.86966 1.26196 0.92215 0.97366 0.99647 1.69641 1.26136 1.23055 1.20297 0.85795 0.79125 0.80249 0.78990 1.17869 1.19352 1.19373 1.72212 1.35726 1.20478 1.07456 1.22231 0.97555 1.00078 0.96386 1.22810 1.00247 0.94618 1.01862 1.22944 1.02796 1.04565 0.91115 0.93986 0.89912 0.94260 0.89735 0.86968 0.87639 0.89356 0.89024 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.81 101.05 1.09 1.62 15 2 O -0.37 -7.19 8.69 -35.23 -0.31 -7.50 15 3 C 0.22 4.58 3.01 -27.88 -0.08 4.49 15 4 H 0.08 1.54 7.79 -51.93 -0.40 1.14 15 5 C 0.13 3.44 7.00 -156.78 -1.10 2.34 15 6 N -0.44 -12.47 12.15 31.51 0.38 -12.09 15 7 O 0.05 1.42 9.74 15.14 0.15 1.56 15 8 C 0.30 8.67 7.81 -16.35 -0.13 8.54 15 9 C -0.42 -11.12 9.48 -37.95 -0.36 -11.48 15 10 H 0.11 2.82 7.85 -52.49 -0.41 2.40 15 11 C 0.07 1.72 5.50 -17.28 -0.10 1.62 15 12 N -0.76 -19.64 12.06 55.57 0.67 -18.97 15 13 Si 0.94 17.64 29.56 -169.99 -5.03 12.62 15 14 H -0.26 -4.71 7.11 56.52 0.40 -4.31 15 15 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 16 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 17 N -0.61 -17.05 11.61 -11.50 -0.13 -17.18 15 18 C -0.14 -2.58 5.69 -90.62 -0.52 -3.10 15 19 C -0.16 -2.52 9.88 -26.70 -0.26 -2.78 15 20 C -0.18 -2.47 10.19 -26.69 -0.27 -2.75 15 21 H 0.04 0.75 8.14 -51.93 -0.42 0.32 15 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 23 H 0.04 0.53 8.08 -51.93 -0.42 0.11 15 24 H 0.29 6.60 8.29 -40.82 -0.34 6.26 15 25 H 0.11 2.13 8.11 -51.93 -0.42 1.70 15 26 H 0.11 1.76 7.07 -51.92 -0.37 1.40 15 27 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 28 H 0.09 1.10 8.14 -51.93 -0.42 0.67 15 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 15 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -30.83 262.41 -5.30 -36.13 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -3.27 Total: 2.95 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.72 Total: -1.49 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.92 Total: -48.24 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.16 Total: -5.93 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.83 -5.30 -36.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234759939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.418 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds