Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 113.99808 * 2 1 4 4 H 1.08998 * 109.47158 * 30.00044 * 3 2 1 5 5 C 1.50701 * 109.47281 * 269.99760 * 3 2 1 6 6 N 1.30454 * 126.07067 * 314.98050 * 5 3 2 7 7 O 1.21284 * 110.68392 * 179.97438 * 6 5 3 8 8 C 1.34750 * 109.53295 * 359.97438 * 7 6 5 9 9 C 1.40334 * 126.79649 * 179.97438 * 8 7 6 10 10 H 1.07999 * 120.00150 * 180.02562 * 9 8 7 11 11 C 1.40469 * 119.99608 * 0.05501 * 9 8 7 12 12 N 1.30503 * 120.00134 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99793 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47254 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47389 * 119.99852 * 13 11 9 16 16 H 1.48505 * 109.47002 * 239.99929 * 13 11 9 17 17 N 1.33336 * 106.41285 * 0.02562 * 8 7 6 18 18 C 1.52998 * 109.46975 * 150.00227 * 3 2 1 19 19 C 1.52998 * 117.50092 * 8.73994 * 18 3 2 20 20 C 1.53005 * 117.49818 * 300.08438 * 18 3 2 21 21 H 1.09004 * 109.47045 * 60.00033 * 1 2 3 22 22 H 1.09001 * 109.46960 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47153 * 300.00035 * 1 2 3 24 24 H 0.96996 * 120.00214 * 179.97438 * 12 11 9 25 25 H 1.08995 * 115.55422 * 154.42041 * 18 3 2 26 26 H 1.09008 * 117.49829 * 0.02562 * 19 18 3 27 27 H 1.09000 * 117.49936 * 145.02310 * 19 18 3 28 28 H 1.08998 * 117.50239 * 214.98562 * 20 18 3 29 29 H 1.09007 * 117.49784 * 359.97438 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2146 1.7644 -1.4208 6 7 2.7144 1.0529 -2.3934 7 8 2.7517 1.6974 -3.4202 8 6 2.2599 2.9316 -3.1956 9 6 2.1358 3.9701 -4.1313 10 1 1.7239 4.9220 -3.8301 11 6 2.5467 3.7713 -5.4597 12 7 3.0443 2.6210 -5.8236 13 14 2.3822 5.1538 -6.7051 14 1 1.7939 6.3471 -6.0453 15 1 3.7226 5.4964 -7.2444 16 1 1.4986 4.7170 -7.8158 17 7 1.9154 2.9714 -1.9081 18 6 3.3589 1.2632 0.7212 19 6 3.9152 -0.1110 1.0992 20 6 3.3638 0.8167 2.1846 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 3.3277 2.4836 -6.7410 25 1 4.0735 2.0320 0.4273 26 1 3.3206 -0.9851 0.8336 27 1 4.9959 -0.2462 1.0542 28 1 4.0818 1.2914 2.8533 29 1 2.4061 0.5534 2.6337 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234759939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = 4.816682 kcal Electronic energy + Delta-G solvation = -15280.756345 eV Core-core repulsion = 12592.759957 eV Total energy + Delta-G solvation = -2687.996388 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -45.07975 -39.90527 -37.03827 -36.08888 -35.52465 -32.58147 -29.42776 -28.46234 -27.11022 -23.76283 -23.21967 -23.07726 -21.52277 -19.79322 -17.93270 -17.53210 -17.38265 -17.16527 -16.76493 -16.08825 -15.53872 -15.10083 -14.34941 -14.03167 -13.59066 -13.46226 -13.10407 -12.70675 -12.56370 -12.27984 -12.15997 -11.95438 -11.91568 -11.56130 -11.30935 -11.12358 -11.00416 -10.79882 -10.32597 -8.96917 -7.11431 0.97358 1.40179 1.51046 1.62204 1.95548 2.14532 2.51564 2.93299 3.01898 3.20188 3.42732 3.82492 3.86215 4.05324 4.24202 4.37620 4.41438 4.51099 4.64250 4.71108 4.79515 4.92433 4.96545 5.20232 5.33644 5.41135 5.82337 6.02215 6.08836 6.28764 6.43406 8.05698 8.30096 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.051389 B = 0.006789 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.728645 B = 4123.429333 C = 4235.619293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.380 6.380 3 C 0.226 3.774 4 H 0.091 0.909 5 C 0.144 3.856 6 N -0.473 5.473 7 O 0.012 5.988 8 C 0.268 3.732 9 C -0.434 4.434 10 H 0.122 0.878 11 C 0.028 3.972 12 N -0.797 5.797 13 Si 1.024 2.976 14 H -0.247 1.247 15 H -0.256 1.256 16 H -0.257 1.257 17 N -0.637 5.637 18 C -0.178 4.178 19 C -0.162 4.162 20 C -0.135 4.135 21 H 0.013 0.987 22 H 0.110 0.890 23 H 0.069 0.931 24 H 0.306 0.694 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.119 0.881 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.636 -0.291 7.024 7.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.298 6.298 3 C 0.166 3.834 4 H 0.108 0.892 5 C -0.131 4.131 6 N -0.207 5.207 7 O -0.031 6.031 8 C 0.079 3.921 9 C -0.471 4.471 10 H 0.140 0.860 11 C -0.194 4.194 12 N -0.424 5.424 13 Si 0.840 3.160 14 H -0.170 1.170 15 H -0.181 1.181 16 H -0.181 1.181 17 N -0.384 5.384 18 C -0.197 4.197 19 C -0.198 4.198 20 C -0.171 4.171 21 H 0.032 0.968 22 H 0.129 0.871 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.350 -1.218 7.295 7.518 hybrid contribution -0.159 0.633 -1.063 1.248 sum -1.509 -0.585 6.232 6.438 Atomic orbital electron populations 1.22986 0.79769 1.04087 1.00063 1.87899 1.21200 1.26278 1.94381 1.19450 0.95218 0.84567 0.84203 0.89153 1.26232 0.98538 0.88721 0.99611 1.74281 1.28929 1.22556 0.94910 1.85502 1.66004 1.22808 1.28783 1.24876 0.89632 0.86567 0.90995 1.19173 1.38353 0.97324 0.92255 0.85982 1.27426 0.90665 1.00356 1.00947 1.69700 1.25445 1.25386 1.21839 0.84547 0.79773 0.76113 0.75577 1.16953 1.18058 1.18082 1.72199 1.37063 1.21706 1.07409 1.22119 0.96333 1.01235 1.00000 1.22866 1.00845 0.93259 1.02876 1.23073 1.03804 1.01310 0.88943 0.96810 0.87148 0.91211 0.88251 0.88816 0.88628 0.88241 0.86307 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 10.81 113.37 1.23 2.05 15 2 O -0.38 -14.55 8.69 -148.98 -1.29 -15.84 15 3 C 0.23 9.27 3.01 29.85 0.09 9.36 15 4 H 0.09 3.43 7.79 -2.39 -0.02 3.42 15 5 C 0.14 7.70 7.00 138.61 0.97 8.67 15 6 N -0.47 -27.86 12.15 -56.61 -0.69 -28.55 15 7 O 0.01 0.75 9.74 64.24 0.63 1.38 15 8 C 0.27 16.07 7.81 85.06 0.66 16.73 15 9 C -0.43 -23.52 9.48 23.32 0.22 -23.30 15 10 H 0.12 6.17 7.85 -2.91 -0.02 6.14 15 11 C 0.03 1.35 5.50 85.43 0.47 1.82 15 12 N -0.80 -41.38 12.06 21.91 0.26 -41.11 15 13 Si 1.02 34.87 29.56 68.60 2.03 36.90 15 14 H -0.25 -8.01 7.11 99.48 0.71 -7.31 15 15 H -0.26 -8.23 7.11 99.48 0.71 -7.53 15 16 H -0.26 -8.24 7.11 99.48 0.71 -7.54 15 17 N -0.64 -36.68 11.61 -305.20 -3.54 -40.22 15 18 C -0.18 -6.31 5.69 -10.79 -0.06 -6.37 15 19 C -0.16 -4.92 9.88 30.62 0.30 -4.61 15 20 C -0.13 -3.36 10.19 30.62 0.31 -3.05 15 21 H 0.01 0.48 8.14 -2.39 -0.02 0.46 15 22 H 0.11 2.73 8.14 -2.39 -0.02 2.71 15 23 H 0.07 1.71 8.08 -2.39 -0.02 1.69 15 24 H 0.31 13.79 8.29 -92.71 -0.77 13.02 15 25 H 0.09 3.63 8.11 -2.39 -0.02 3.61 15 26 H 0.10 3.11 7.07 -2.38 -0.02 3.09 15 27 H 0.10 2.75 8.14 -2.39 -0.02 2.73 15 28 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 29 H 0.11 2.40 8.14 -2.38 -0.02 2.38 15 Total: -1.00 -69.66 262.41 2.75 -66.92 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 1.16 Total: 19.24 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 4.19 Total: 1.29 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -3.97 Total: -109.89 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.67 Total: -14.47 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -69.66 2.75 -66.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234759939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.734 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds