Wall clock time and date at job start Mon Mar 30 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47223 * 239.99695 * 3 2 1 5 5 H 1.48501 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47560 * 119.99568 * 3 2 1 7 7 C 1.38953 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00071 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00306 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99677 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00326 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.35046 * 126.39446 * 270.00006 * 13 12 10 15 15 N 1.30499 * 108.69457 * 180.02562 * 14 13 12 16 16 C 1.34128 * 109.26095 * 0.02562 * 15 14 13 17 17 C 1.50697 * 125.99126 * 180.26420 * 16 15 14 18 18 N 1.46901 * 109.47142 * 274.68617 * 17 16 15 19 19 C 1.34675 * 108.01655 * 0.02562 * 16 15 14 20 20 H 0.97000 * 119.99899 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99743 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46730 * 60.00326 * 12 10 9 23 23 H 1.08996 * 109.47459 * 300.00158 * 12 10 9 24 24 H 1.08000 * 125.65569 * 359.97438 * 14 13 12 25 25 H 1.09003 * 109.47361 * 34.69044 * 17 16 15 26 26 H 1.08999 * 109.46998 * 154.68800 * 17 16 15 27 27 H 1.00902 * 110.99470 * 56.04838 * 18 17 16 28 28 H 1.00905 * 110.99753 * 179.97438 * 18 17 16 29 29 H 1.07999 * 126.58816 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0027 14 6 2.7164 -6.5860 -1.0841 15 7 3.5239 -7.5311 -0.6869 16 6 3.5469 -7.5589 0.6539 17 6 4.3582 -8.5002 1.5063 18 7 3.6185 -9.7561 1.6893 19 6 2.7219 -6.5946 1.1047 20 1 -0.4850 0.8400 -0.0004 21 1 0.3533 -2.3906 0.0005 22 1 0.6174 -4.9212 -0.8881 23 1 0.6166 -4.9201 0.8919 24 1 2.4998 -6.3337 -2.1117 25 1 5.3092 -8.7068 1.0154 26 1 4.5430 -8.0425 2.4781 27 1 3.3787 -10.1673 0.7996 28 1 4.1422 -10.4047 2.2577 29 1 2.5157 -6.3548 2.1373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236179288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:01 Heat of formation + Delta-G solvation = 24.585668 kcal Electronic energy + Delta-G solvation = -14689.347503 eV Core-core repulsion = 12034.501114 eV Total energy + Delta-G solvation = -2654.846389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.69470 -38.28948 -34.95240 -34.14674 -32.92204 -31.42083 -29.22789 -27.77861 -24.93253 -24.17443 -21.13089 -19.87565 -19.50406 -18.16973 -16.66762 -16.45305 -15.63940 -14.95020 -14.61519 -14.38955 -14.02726 -13.92125 -13.56409 -13.45717 -12.58940 -12.47294 -11.90901 -11.77104 -11.68122 -11.14418 -10.55434 -10.37729 -9.69307 -9.67321 -9.54072 -8.67099 -8.52135 -8.17391 -7.98445 -6.58819 -4.00770 2.43825 3.08725 3.13403 3.17601 3.23274 3.42511 3.61099 4.05353 4.73956 4.74659 4.95470 4.99705 5.20092 5.26838 5.40129 5.44252 5.55237 5.81919 5.98277 6.20656 6.66210 7.01712 7.15527 7.39451 7.48081 7.54076 7.84987 8.38011 8.43961 8.98459 9.29536 9.79131 10.57829 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.065909 B = 0.005241 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.727016 B = 5341.212872 C = 5453.125734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.104 0.896 9 N -0.550 5.550 10 C 0.416 3.584 11 O -0.579 6.579 12 C 0.091 3.909 13 N -0.430 5.430 14 C 0.193 3.807 15 N -0.498 5.498 16 C -0.015 4.015 17 C 0.153 3.847 18 N -0.847 5.847 19 C -0.018 4.018 20 H 0.275 0.725 21 H 0.394 0.606 22 H 0.109 0.891 23 H 0.107 0.893 24 H 0.199 0.801 25 H 0.036 0.964 26 H 0.079 0.921 27 H 0.343 0.657 28 H 0.337 0.663 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.169 -10.976 1.513 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.122 0.878 9 N -0.186 5.186 10 C 0.200 3.800 11 O -0.463 6.463 12 C -0.036 4.036 13 N -0.110 5.110 14 C -0.089 4.089 15 N -0.217 5.217 16 C -0.144 4.144 17 C 0.021 3.979 18 N -0.377 5.377 19 C -0.153 4.153 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.127 0.873 23 H 0.125 0.875 24 H 0.216 0.784 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.156 0.844 28 H 0.149 0.851 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.638 -10.739 1.363 10.844 hybrid contribution 0.034 1.191 -0.029 1.192 sum 0.672 -9.548 1.334 9.664 Atomic orbital electron populations 1.69594 1.05991 1.28704 1.49342 1.25312 0.95686 0.99923 0.96688 0.85866 0.78805 0.80053 0.79256 1.19733 1.20776 1.19737 1.19672 0.93437 0.81950 1.48336 0.87818 1.41806 1.09293 1.04407 1.63127 1.19905 0.88675 0.84831 0.86599 1.90611 1.13388 1.86620 1.55724 1.21666 0.90839 0.85575 1.05470 1.44910 1.34004 1.25089 1.06990 1.24711 0.96925 0.93723 0.93583 1.70046 1.19457 1.20868 1.11377 1.20263 1.03099 1.00480 0.90589 1.19809 0.92620 0.88449 0.96974 1.58763 1.49557 1.07252 1.22112 1.22315 1.01980 0.98464 0.92573 0.91500 0.77211 0.87322 0.87527 0.78421 0.94563 0.90228 0.84448 0.85077 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.24 13.05 55.50 0.72 -22.51 15 2 C 0.03 0.69 5.50 -17.46 -0.10 0.59 15 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 15 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 15 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 7 C -0.30 -8.16 9.68 -14.93 -0.14 -8.31 15 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 15 9 N -0.55 -13.09 5.29 -10.97 -0.06 -13.14 15 10 C 0.42 9.26 7.85 -10.99 -0.09 9.18 15 11 O -0.58 -15.54 16.01 5.54 0.09 -15.46 15 12 C 0.09 1.47 6.63 -5.19 -0.03 1.44 15 13 N -0.43 -7.41 2.24 -119.87 -0.27 -7.68 15 14 C 0.19 3.32 12.56 -90.37 -1.14 2.18 15 15 N -0.50 -9.03 11.25 -10.87 -0.12 -9.16 15 16 C -0.02 -0.26 6.60 -82.85 -0.55 -0.81 15 17 C 0.15 2.05 7.32 -4.98 -0.04 2.02 15 18 N -0.85 -9.79 9.61 -11.41 -0.11 -9.90 15 19 C -0.02 -0.31 11.49 -16.56 -0.19 -0.50 15 20 H 0.28 6.77 8.31 -40.82 -0.34 6.43 15 21 H 0.39 8.75 7.90 -40.82 -0.32 8.43 15 22 H 0.11 1.41 8.14 -51.93 -0.42 0.99 15 23 H 0.11 1.45 8.14 -51.93 -0.42 1.02 15 24 H 0.20 2.77 8.06 -52.49 -0.42 2.35 15 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 15 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 15 27 H 0.34 4.01 8.99 -39.29 -0.35 3.66 15 28 H 0.34 2.96 9.08 -39.29 -0.36 2.60 15 29 H 0.17 2.49 8.06 -52.49 -0.42 2.07 15 LS Contribution 266.07 15.07 4.01 4.01 Total: -1.00 -32.51 266.07 -6.11 -38.62 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -3.08 Total: 14.09 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -2.27 Total: 5.79 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.17 Total: -62.40 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.09 Total: -15.46 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.51 -6.11 -38.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236179288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.204 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds