Wall clock time and date at job start Mon Mar 30 2020 03:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47223 * 239.99695 * 3 2 1 5 5 H 1.48501 * 109.47455 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47560 * 119.99568 * 3 2 1 7 7 C 1.38953 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00071 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99966 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00306 * 180.02562 * 9 7 2 11 11 O 1.21295 * 119.99677 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00326 * 179.97438 * 10 9 7 13 13 N 1.46504 * 109.46978 * 179.97438 * 12 10 9 14 14 C 1.35046 * 126.39446 * 270.00006 * 13 12 10 15 15 N 1.30499 * 108.69457 * 180.02562 * 14 13 12 16 16 C 1.34128 * 109.26095 * 0.02562 * 15 14 13 17 17 C 1.50697 * 125.99126 * 180.26420 * 16 15 14 18 18 N 1.46901 * 109.47142 * 274.68617 * 17 16 15 19 19 C 1.34675 * 108.01655 * 0.02562 * 16 15 14 20 20 H 0.97000 * 119.99899 * 0.02562 * 1 2 3 21 21 H 0.97008 * 119.99743 * 359.97438 * 9 7 2 22 22 H 1.09001 * 109.46730 * 60.00326 * 12 10 9 23 23 H 1.08996 * 109.47459 * 300.00158 * 12 10 9 24 24 H 1.08000 * 125.65569 * 359.97438 * 14 13 12 25 25 H 1.09003 * 109.47361 * 34.69044 * 17 16 15 26 26 H 1.08999 * 109.46998 * 154.68800 * 17 16 15 27 27 H 1.00902 * 110.99470 * 56.04838 * 18 17 16 28 28 H 1.00905 * 110.99753 * 179.97438 * 18 17 16 29 29 H 1.07999 * 126.58816 * 179.97438 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2833 2.7465 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8629 0.0022 13 7 2.1957 -5.9765 0.0027 14 6 2.7164 -6.5860 -1.0841 15 7 3.5239 -7.5311 -0.6869 16 6 3.5469 -7.5589 0.6539 17 6 4.3582 -8.5002 1.5063 18 7 3.6185 -9.7561 1.6893 19 6 2.7219 -6.5946 1.1047 20 1 -0.4850 0.8400 -0.0004 21 1 0.3533 -2.3906 0.0005 22 1 0.6174 -4.9212 -0.8881 23 1 0.6166 -4.9201 0.8919 24 1 2.4998 -6.3337 -2.1117 25 1 5.3092 -8.7068 1.0154 26 1 4.5430 -8.0425 2.4781 27 1 3.3787 -10.1673 0.7996 28 1 4.1422 -10.4047 2.2577 29 1 2.5157 -6.3548 2.1373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236179288.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:01 Heat of formation + Delta-G solvation = 0.198327 kcal Electronic energy + Delta-G solvation = -14690.405018 eV Core-core repulsion = 12034.501114 eV Total energy + Delta-G solvation = -2655.903904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.98198 -40.09790 -36.28199 -35.84211 -34.23847 -33.33733 -30.46121 -29.22494 -26.65403 -25.41746 -22.53979 -21.31311 -20.95381 -20.05734 -18.13562 -17.95944 -16.75525 -16.66804 -16.01646 -15.90956 -15.62465 -15.31058 -14.86397 -14.80285 -14.14292 -13.74629 -13.53734 -13.29182 -12.91656 -12.84974 -12.50582 -12.15904 -11.59503 -11.05838 -10.98478 -10.22101 -10.11326 -9.62867 -9.25132 -8.53901 -6.03412 1.11734 1.35062 1.40873 1.50593 1.88171 1.88906 2.15259 2.27511 3.11465 3.12090 3.64271 3.89891 3.99575 4.00759 4.22936 4.27567 4.31730 4.40892 4.76531 5.00927 5.34981 5.38155 5.79996 5.88116 6.18240 6.29159 6.49601 6.66412 7.03404 7.14898 7.42093 7.96998 8.62035 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.065909 B = 0.005241 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.727016 B = 5341.212872 C = 5453.125734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.005 4.005 3 Si 0.990 3.010 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.338 4.338 8 H 0.076 0.924 9 N -0.557 5.557 10 C 0.418 3.582 11 O -0.629 6.629 12 C 0.104 3.896 13 N -0.436 5.436 14 C 0.182 3.818 15 N -0.522 5.522 16 C -0.027 4.027 17 C 0.155 3.845 18 N -0.846 5.846 19 C -0.037 4.037 20 H 0.281 0.719 21 H 0.402 0.598 22 H 0.147 0.853 23 H 0.139 0.861 24 H 0.223 0.777 25 H 0.034 0.966 26 H 0.091 0.909 27 H 0.343 0.657 28 H 0.354 0.646 29 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -11.256 1.738 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.206 4.206 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.467 4.467 8 H 0.094 0.906 9 N -0.194 5.194 10 C 0.204 3.796 11 O -0.516 6.516 12 C -0.022 4.022 13 N -0.117 5.117 14 C -0.100 4.100 15 N -0.241 5.241 16 C -0.156 4.156 17 C 0.024 3.976 18 N -0.377 5.377 19 C -0.171 4.171 20 H 0.090 0.910 21 H 0.237 0.763 22 H 0.165 0.835 23 H 0.157 0.843 24 H 0.239 0.761 25 H 0.052 0.948 26 H 0.109 0.891 27 H 0.155 0.845 28 H 0.168 0.832 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.147 -11.043 1.603 11.160 hybrid contribution 0.296 1.205 -0.101 1.244 sum 0.148 -9.839 1.502 9.954 Atomic orbital electron populations 1.69636 1.06660 1.29691 1.49137 1.25996 0.96538 1.02279 0.95814 0.85026 0.77873 0.76802 0.78910 1.19829 1.19236 1.19836 1.19573 0.92644 0.83884 1.50641 0.90556 1.41815 1.09562 1.04315 1.63683 1.20946 0.88357 0.86360 0.83896 1.90584 1.15982 1.87749 1.57287 1.21706 0.90042 0.81518 1.08931 1.45036 1.34397 1.25178 1.07091 1.25310 0.96545 0.93480 0.94696 1.70058 1.20145 1.21730 1.12193 1.20843 1.03141 1.01031 0.90580 1.19829 0.92097 0.88809 0.96909 1.58710 1.49580 1.07099 1.22320 1.22735 1.02291 0.98686 0.93401 0.90986 0.76337 0.83516 0.84311 0.76094 0.94768 0.89094 0.84516 0.83205 0.79958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.43 13.05 21.66 0.28 -46.15 15 2 C -0.01 -0.26 5.50 84.93 0.47 0.21 15 3 Si 0.99 41.31 29.55 68.60 2.03 43.34 15 4 H -0.27 -11.36 7.11 99.48 0.71 -10.66 15 5 H -0.27 -10.48 7.11 99.48 0.71 -9.77 15 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 7 C -0.34 -18.31 9.68 84.04 0.81 -17.49 15 8 H 0.08 4.49 7.16 -2.92 -0.02 4.47 15 9 N -0.56 -26.34 5.29 -306.99 -1.62 -27.96 15 10 C 0.42 18.35 7.85 87.66 0.69 19.04 15 11 O -0.63 -34.08 16.01 -3.08 -0.05 -34.13 15 12 C 0.10 3.09 6.63 85.63 0.57 3.66 15 13 N -0.44 -14.29 2.24 -533.15 -1.19 -15.48 15 14 C 0.18 6.01 12.56 180.26 2.26 8.27 15 15 N -0.52 -18.46 11.25 -188.31 -2.12 -20.58 15 16 C -0.03 -0.90 6.60 41.39 0.27 -0.63 15 17 C 0.15 3.98 7.32 85.56 0.63 4.60 15 18 N -0.85 -18.18 9.61 -190.01 -1.83 -20.01 15 19 C -0.04 -1.19 11.49 83.09 0.95 -0.24 15 20 H 0.28 13.43 8.31 -92.71 -0.77 12.66 15 21 H 0.40 17.48 7.90 -92.70 -0.73 16.75 15 22 H 0.15 3.29 8.14 -2.39 -0.02 3.27 15 23 H 0.14 3.29 8.14 -2.39 -0.02 3.27 15 24 H 0.22 5.81 8.06 -2.91 -0.02 5.79 15 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 15 26 H 0.09 2.09 8.14 -2.39 -0.02 2.07 15 27 H 0.34 7.54 8.99 -89.69 -0.81 6.74 15 28 H 0.35 5.54 9.08 -89.69 -0.81 4.73 15 29 H 0.18 5.15 8.06 -2.91 -0.02 5.13 15 Total: -1.00 -69.90 266.07 1.01 -68.89 By element: Atomic # 1 Polarization: 35.80 SS G_CDS: -1.15 Total: 34.65 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.66 Total: 17.42 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -6.48 Total: -130.17 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.05 Total: -34.13 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -69.90 1.01 -68.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236179288.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.088 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds