Wall clock time and date at job start Mon Mar 30 2020 03:28:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38145 * 120.02361 * 2 1
4 4 C 1.38440 * 120.04901 * 180.02562 * 3 2 1
5 5 F 1.35098 * 119.95421 * 180.02562 * 4 3 2
6 6 C 1.38488 * 120.09733 * 359.97438 * 4 3 2
7 7 C 1.38091 * 120.05159 * 0.02562 * 6 4 3
8 8 C 1.50707 * 120.02867 * 179.97438 * 7 6 4
9 9 H 1.08992 * 109.47349 * 145.00306 * 8 7 6
10 10 N 1.46895 * 109.46790 * 25.00103 * 8 7 6
11 11 C 1.50695 * 109.47014 * 265.00447 * 8 7 6
12 12 H 1.08004 * 120.00546 * 0.27454 * 11 8 7
13 13 C 1.37885 * 119.99721 * 179.97438 * 11 8 7
14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 8
15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 8
16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11
17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11
18 18 H 1.48500 * 109.47000 * 240.00224 * 15 13 11
19 19 C 1.38859 * 120.02803 * 180.27408 * 2 1 3
20 20 N 1.39826 * 120.04425 * 0.02562 * 19 2 1
21 21 H 1.08998 * 109.47186 * 90.00023 * 1 2 3
22 22 H 1.08997 * 109.46899 * 210.00500 * 1 2 3
23 23 H 1.09009 * 109.47098 * 330.00103 * 1 2 3
24 24 H 1.07994 * 119.97847 * 359.97438 * 3 2 1
25 25 H 1.08004 * 119.97735 * 180.02562 * 6 4 3
26 26 H 1.00902 * 111.00742 * 300.00069 * 10 8 7
27 27 H 1.00901 * 111.00236 * 63.95448 * 10 8 7
28 28 H 0.97000 * 119.99706 * 179.97438 * 14 13 11
29 29 H 0.97003 * 119.99623 * 180.23077 * 20 19 2
30 30 H 0.96997 * 120.00225 * 0.22900 * 20 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1961 0.0000
4 6 3.5826 1.1967 -0.0005
5 9 4.2566 2.3675 0.0000
6 6 4.2776 -0.0012 -0.0005
7 6 3.5908 -1.1992 -0.0005
8 6 4.3476 -2.5024 -0.0011
9 1 3.8024 -3.2395 0.5883
10 7 5.6792 -2.2955 0.5837
11 6 4.4924 -2.9986 -1.4167
12 1 4.0817 -2.4252 -2.2346
13 6 5.1546 -4.1816 -1.6682
14 7 5.6594 -4.8771 -0.6727
15 14 5.3333 -4.7970 -3.4229
16 1 4.6823 -3.8391 -4.3522
17 1 6.7744 -4.9133 -3.7621
18 1 4.6861 -6.1275 -3.5491
19 6 2.2019 -1.2022 -0.0058
20 7 1.5043 -2.4140 -0.0121
21 1 -0.3633 0.0000 -1.0276
22 1 -0.3633 -0.8899 0.5139
23 1 -0.3634 0.8901 0.5139
24 1 1.6583 2.1314 -0.0004
25 1 5.3576 0.0016 -0.0005
26 1 6.2049 -1.6159 0.0549
27 1 5.6102 -2.0244 1.5532
28 1 6.1249 -5.7095 -0.8497
29 1 1.9904 -3.2534 -0.0127
30 1 0.5343 -2.4152 -0.0158
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238529241.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:22
Heat of formation + Delta-G solvation = -24.725446 kcal
Electronic energy + Delta-G solvation = -15291.482733 eV
Core-core repulsion = 12614.578092 eV
Total energy + Delta-G solvation = -2676.904641 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.102 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-48.19383 -39.18682 -34.88212 -33.74760 -32.05026 -30.61236 -27.85655 -26.54971
-25.84661 -22.98937 -20.93894 -19.66127 -17.02468 -16.68479 -16.40390 -16.02560
-14.95541 -14.63324 -14.50225 -14.05314 -13.45574 -13.24990 -13.04905 -12.74281
-12.56197 -12.09747 -11.73191 -11.60001 -11.08080 -10.85388 -10.78883 -10.45083
-9.83522 -9.76016 -9.28529 -8.49518 -8.07485 -7.13809 -6.74079 -5.92063
-4.07882 1.85571 2.02285 3.29303 3.38596 3.42745 4.23616 4.46792
4.53566 4.90942 5.23733 5.28365 5.34235 5.56289 5.75945 5.78490
5.92873 6.07657 6.24116 6.48207 6.53309 6.74460 6.85872 6.91696
7.40880 7.46927 7.87469 8.05645 8.14166 8.40245 8.60343 8.97009
9.11053 9.61522 11.10959
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.028793 B = 0.009116 C = 0.008067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.211090 B = 3070.950821 C = 3470.187268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.098 4.098
2 C -0.156 4.156
3 C -0.128 4.128
4 C 0.030 3.970
5 F -0.157 7.157
6 C -0.121 4.121
7 C -0.119 4.119
8 C 0.262 3.738
9 H 0.046 0.954
10 N -0.811 5.811
11 C -0.528 4.528
12 H 0.054 0.946
13 C 0.083 3.917
14 N -0.846 5.846
15 Si 0.883 3.117
16 H -0.274 1.274
17 H -0.284 1.284
18 H -0.285 1.285
19 C 0.218 3.782
20 N -0.868 5.868
21 H 0.062 0.938
22 H 0.059 0.941
23 H 0.061 0.939
24 H 0.121 0.879
25 H 0.126 0.874
26 H 0.319 0.681
27 H 0.299 0.701
28 H 0.255 0.745
29 H 0.410 0.590
30 H 0.388 0.612
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.140 7.100 2.252 11.033
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.161 4.161
3 C -0.148 4.148
4 C 0.009 3.991
5 F -0.136 7.136
6 C -0.141 4.141
7 C -0.126 4.126
8 C 0.152 3.848
9 H 0.063 0.937
10 N -0.337 5.337
11 C -0.567 4.567
12 H 0.072 0.928
13 C -0.123 4.123
14 N -0.481 5.481
15 Si 0.711 3.289
16 H -0.199 1.199
17 H -0.210 1.210
18 H -0.211 1.211
19 C 0.111 3.889
20 N -0.409 5.409
21 H 0.081 0.919
22 H 0.077 0.923
23 H 0.080 0.920
24 H 0.139 0.861
25 H 0.144 0.856
26 H 0.132 0.868
27 H 0.110 0.890
28 H 0.065 0.935
29 H 0.242 0.758
30 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -7.846 6.180 2.153 10.217
hybrid contribution -0.165 0.606 -0.936 1.127
sum -8.011 6.786 1.217 10.569
Atomic orbital electron populations
1.20515 0.91555 1.01849 1.01575 1.19056 0.95355 0.91301 1.10436
1.20448 0.91986 0.97794 1.04529 1.17391 0.89963 0.80912 1.10803
1.91392 1.80676 1.46571 1.94958 1.20711 1.00291 0.90443 1.02671
1.21178 0.92257 0.98717 1.00403 1.18019 0.84896 0.85844 0.96028
0.93664 1.59167 1.18550 1.52906 1.03056 1.20867 1.38539 1.06468
0.90827 0.92793 1.24961 0.94711 0.96467 0.96204 1.70112 1.34244
1.13690 1.30017 0.86703 0.77833 0.78595 0.85761 1.19914 1.21044
1.21144 1.17477 0.90978 0.85940 0.94500 1.42644 1.08090 1.05997
1.84131 0.91917 0.92262 0.92018 0.86144 0.85617 0.86783 0.89045
0.93463 0.75811 0.78424
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.20 9.56 36.00 0.34 -0.86 16
2 C -0.16 -2.56 5.90 -104.43 -0.62 -3.18 16
3 C -0.13 -2.14 9.67 -39.54 -0.38 -2.53 16
4 C 0.03 0.56 7.30 -39.41 -0.29 0.28 16
5 F -0.16 -2.87 17.26 2.25 0.04 -2.83 16
6 C -0.12 -2.40 9.24 -39.54 -0.37 -2.77 16
7 C -0.12 -2.47 5.00 -104.43 -0.52 -2.99 16
8 C 0.26 6.17 2.28 -70.02 -0.16 6.01 16
9 H 0.05 1.14 6.83 -51.93 -0.35 0.78 16
10 N -0.81 -18.60 8.13 -6.65 -0.05 -18.65 16
11 C -0.53 -13.88 8.71 -34.44 -0.30 -14.18 16
12 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16
13 C 0.08 2.24 5.39 -17.82 -0.10 2.15 16
14 N -0.85 -23.72 12.77 55.43 0.71 -23.01 16
15 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16
16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16
17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16
19 C 0.22 4.04 6.72 -83.74 -0.56 3.47 16
20 N -0.87 -14.23 8.90 32.43 0.29 -13.94 16
21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
22 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16
23 H 0.06 0.66 8.09 -51.92 -0.42 0.24 16
24 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16
25 H 0.13 2.42 6.29 -52.48 -0.33 2.09 16
26 H 0.32 7.09 7.20 -39.29 -0.28 6.81 16
27 H 0.30 6.19 9.06 -39.29 -0.36 5.83 16
28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16
29 H 0.41 7.37 6.94 -40.82 -0.28 7.09 16
30 H 0.39 5.07 6.83 -40.82 -0.28 4.79 16
LS Contribution 257.73 15.07 3.88 3.88
Total: -1.00 -28.75 257.73 -6.14 -34.89
By element:
Atomic # 1 Polarization: 21.40 SS G_CDS: -3.03 Total: 18.37 kcal
Atomic # 6 Polarization: -11.64 SS G_CDS: -2.95 Total: -14.59 kcal
Atomic # 7 Polarization: -56.55 SS G_CDS: 0.94 Total: -55.61 kcal
Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -28.75 -6.14 -34.89 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238529241.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.163 kcal
(2) G-P(sol) polarization free energy of solvation -28.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.590 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.725 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds