Wall clock time and date at job start Mon Mar 30 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38145 * 120.02361 * 2 1 4 4 C 1.38440 * 120.04901 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.95421 * 180.02562 * 4 3 2 6 6 C 1.38488 * 120.09733 * 359.97438 * 4 3 2 7 7 C 1.38091 * 120.05159 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.02867 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47349 * 145.00306 * 8 7 6 10 10 N 1.46895 * 109.46790 * 25.00103 * 8 7 6 11 11 C 1.50695 * 109.47014 * 265.00447 * 8 7 6 12 12 H 1.08004 * 120.00546 * 0.27454 * 11 8 7 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11 18 18 H 1.48500 * 109.47000 * 240.00224 * 15 13 11 19 19 C 1.38859 * 120.02803 * 180.27408 * 2 1 3 20 20 N 1.39826 * 120.04425 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.47186 * 90.00023 * 1 2 3 22 22 H 1.08997 * 109.46899 * 210.00500 * 1 2 3 23 23 H 1.09009 * 109.47098 * 330.00103 * 1 2 3 24 24 H 1.07994 * 119.97847 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.97735 * 180.02562 * 6 4 3 26 26 H 1.00902 * 111.00742 * 300.00069 * 10 8 7 27 27 H 1.00901 * 111.00236 * 63.95448 * 10 8 7 28 28 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 29 29 H 0.97003 * 119.99623 * 180.23077 * 20 19 2 30 30 H 0.96997 * 120.00225 * 0.22900 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5826 1.1967 -0.0005 5 9 4.2566 2.3675 0.0000 6 6 4.2776 -0.0012 -0.0005 7 6 3.5908 -1.1992 -0.0005 8 6 4.3476 -2.5024 -0.0011 9 1 3.8024 -3.2395 0.5883 10 7 5.6792 -2.2955 0.5837 11 6 4.4924 -2.9986 -1.4167 12 1 4.0817 -2.4252 -2.2346 13 6 5.1546 -4.1816 -1.6682 14 7 5.6594 -4.8771 -0.6727 15 14 5.3333 -4.7970 -3.4229 16 1 4.6823 -3.8391 -4.3522 17 1 6.7744 -4.9133 -3.7621 18 1 4.6861 -6.1275 -3.5491 19 6 2.2019 -1.2022 -0.0058 20 7 1.5043 -2.4140 -0.0121 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5139 24 1 1.6583 2.1314 -0.0004 25 1 5.3576 0.0016 -0.0005 26 1 6.2049 -1.6159 0.0549 27 1 5.6102 -2.0244 1.5532 28 1 6.1249 -5.7095 -0.8497 29 1 1.9904 -3.2534 -0.0127 30 1 0.5343 -2.4152 -0.0158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238529241.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:22 Heat of formation + Delta-G solvation = -24.725446 kcal Electronic energy + Delta-G solvation = -15291.482733 eV Core-core repulsion = 12614.578092 eV Total energy + Delta-G solvation = -2676.904641 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.19383 -39.18682 -34.88212 -33.74760 -32.05026 -30.61236 -27.85655 -26.54971 -25.84661 -22.98937 -20.93894 -19.66127 -17.02468 -16.68479 -16.40390 -16.02560 -14.95541 -14.63324 -14.50225 -14.05314 -13.45574 -13.24990 -13.04905 -12.74281 -12.56197 -12.09747 -11.73191 -11.60001 -11.08080 -10.85388 -10.78883 -10.45083 -9.83522 -9.76016 -9.28529 -8.49518 -8.07485 -7.13809 -6.74079 -5.92063 -4.07882 1.85571 2.02285 3.29303 3.38596 3.42745 4.23616 4.46792 4.53566 4.90942 5.23733 5.28365 5.34235 5.56289 5.75945 5.78490 5.92873 6.07657 6.24116 6.48207 6.53309 6.74460 6.85872 6.91696 7.40880 7.46927 7.87469 8.05645 8.14166 8.40245 8.60343 8.97009 9.11053 9.61522 11.10959 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.009116 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.211090 B = 3070.950821 C = 3470.187268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.156 4.156 3 C -0.128 4.128 4 C 0.030 3.970 5 F -0.157 7.157 6 C -0.121 4.121 7 C -0.119 4.119 8 C 0.262 3.738 9 H 0.046 0.954 10 N -0.811 5.811 11 C -0.528 4.528 12 H 0.054 0.946 13 C 0.083 3.917 14 N -0.846 5.846 15 Si 0.883 3.117 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.218 3.782 20 N -0.868 5.868 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.121 0.879 25 H 0.126 0.874 26 H 0.319 0.681 27 H 0.299 0.701 28 H 0.255 0.745 29 H 0.410 0.590 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 7.100 2.252 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.161 4.161 3 C -0.148 4.148 4 C 0.009 3.991 5 F -0.136 7.136 6 C -0.141 4.141 7 C -0.126 4.126 8 C 0.152 3.848 9 H 0.063 0.937 10 N -0.337 5.337 11 C -0.567 4.567 12 H 0.072 0.928 13 C -0.123 4.123 14 N -0.481 5.481 15 Si 0.711 3.289 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.211 1.211 19 C 0.111 3.889 20 N -0.409 5.409 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.132 0.868 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.242 0.758 30 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.846 6.180 2.153 10.217 hybrid contribution -0.165 0.606 -0.936 1.127 sum -8.011 6.786 1.217 10.569 Atomic orbital electron populations 1.20515 0.91555 1.01849 1.01575 1.19056 0.95355 0.91301 1.10436 1.20448 0.91986 0.97794 1.04529 1.17391 0.89963 0.80912 1.10803 1.91392 1.80676 1.46571 1.94958 1.20711 1.00291 0.90443 1.02671 1.21178 0.92257 0.98717 1.00403 1.18019 0.84896 0.85844 0.96028 0.93664 1.59167 1.18550 1.52906 1.03056 1.20867 1.38539 1.06468 0.90827 0.92793 1.24961 0.94711 0.96467 0.96204 1.70112 1.34244 1.13690 1.30017 0.86703 0.77833 0.78595 0.85761 1.19914 1.21044 1.21144 1.17477 0.90978 0.85940 0.94500 1.42644 1.08090 1.05997 1.84131 0.91917 0.92262 0.92018 0.86144 0.85617 0.86783 0.89045 0.93463 0.75811 0.78424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.56 36.00 0.34 -0.86 16 2 C -0.16 -2.56 5.90 -104.43 -0.62 -3.18 16 3 C -0.13 -2.14 9.67 -39.54 -0.38 -2.53 16 4 C 0.03 0.56 7.30 -39.41 -0.29 0.28 16 5 F -0.16 -2.87 17.26 2.25 0.04 -2.83 16 6 C -0.12 -2.40 9.24 -39.54 -0.37 -2.77 16 7 C -0.12 -2.47 5.00 -104.43 -0.52 -2.99 16 8 C 0.26 6.17 2.28 -70.02 -0.16 6.01 16 9 H 0.05 1.14 6.83 -51.93 -0.35 0.78 16 10 N -0.81 -18.60 8.13 -6.65 -0.05 -18.65 16 11 C -0.53 -13.88 8.71 -34.44 -0.30 -14.18 16 12 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 13 C 0.08 2.24 5.39 -17.82 -0.10 2.15 16 14 N -0.85 -23.72 12.77 55.43 0.71 -23.01 16 15 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 19 C 0.22 4.04 6.72 -83.74 -0.56 3.47 16 20 N -0.87 -14.23 8.90 32.43 0.29 -13.94 16 21 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 23 H 0.06 0.66 8.09 -51.92 -0.42 0.24 16 24 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 25 H 0.13 2.42 6.29 -52.48 -0.33 2.09 16 26 H 0.32 7.09 7.20 -39.29 -0.28 6.81 16 27 H 0.30 6.19 9.06 -39.29 -0.36 5.83 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.41 7.37 6.94 -40.82 -0.28 7.09 16 30 H 0.39 5.07 6.83 -40.82 -0.28 4.79 16 LS Contribution 257.73 15.07 3.88 3.88 Total: -1.00 -28.75 257.73 -6.14 -34.89 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -3.03 Total: 18.37 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.95 Total: -14.59 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.94 Total: -55.61 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.75 -6.14 -34.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238529241.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.163 kcal (2) G-P(sol) polarization free energy of solvation -28.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds