Wall clock time and date at job start Mon Mar 30 2020 03:28:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50698 * 1
3 3 C 1.38145 * 120.02361 * 2 1
4 4 C 1.38440 * 120.04901 * 180.02562 * 3 2 1
5 5 F 1.35098 * 119.95421 * 180.02562 * 4 3 2
6 6 C 1.38488 * 120.09733 * 359.97438 * 4 3 2
7 7 C 1.38091 * 120.05159 * 0.02562 * 6 4 3
8 8 C 1.50707 * 120.02867 * 179.97438 * 7 6 4
9 9 H 1.08992 * 109.47349 * 145.00306 * 8 7 6
10 10 N 1.46895 * 109.46790 * 25.00103 * 8 7 6
11 11 C 1.50695 * 109.47014 * 265.00447 * 8 7 6
12 12 H 1.08004 * 120.00546 * 0.27454 * 11 8 7
13 13 C 1.37885 * 119.99721 * 179.97438 * 11 8 7
14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 8
15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 8
16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11
17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11
18 18 H 1.48500 * 109.47000 * 240.00224 * 15 13 11
19 19 C 1.38859 * 120.02803 * 180.27408 * 2 1 3
20 20 N 1.39826 * 120.04425 * 0.02562 * 19 2 1
21 21 H 1.08998 * 109.47186 * 90.00023 * 1 2 3
22 22 H 1.08997 * 109.46899 * 210.00500 * 1 2 3
23 23 H 1.09009 * 109.47098 * 330.00103 * 1 2 3
24 24 H 1.07994 * 119.97847 * 359.97438 * 3 2 1
25 25 H 1.08004 * 119.97735 * 180.02562 * 6 4 3
26 26 H 1.00902 * 111.00742 * 300.00069 * 10 8 7
27 27 H 1.00901 * 111.00236 * 63.95448 * 10 8 7
28 28 H 0.97000 * 119.99706 * 179.97438 * 14 13 11
29 29 H 0.97003 * 119.99623 * 180.23077 * 20 19 2
30 30 H 0.96997 * 120.00225 * 0.22900 * 20 19 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1961 0.0000
4 6 3.5826 1.1967 -0.0005
5 9 4.2566 2.3675 0.0000
6 6 4.2776 -0.0012 -0.0005
7 6 3.5908 -1.1992 -0.0005
8 6 4.3476 -2.5024 -0.0011
9 1 3.8024 -3.2395 0.5883
10 7 5.6792 -2.2955 0.5837
11 6 4.4924 -2.9986 -1.4167
12 1 4.0817 -2.4252 -2.2346
13 6 5.1546 -4.1816 -1.6682
14 7 5.6594 -4.8771 -0.6727
15 14 5.3333 -4.7970 -3.4229
16 1 4.6823 -3.8391 -4.3522
17 1 6.7744 -4.9133 -3.7621
18 1 4.6861 -6.1275 -3.5491
19 6 2.2019 -1.2022 -0.0058
20 7 1.5043 -2.4140 -0.0121
21 1 -0.3633 0.0000 -1.0276
22 1 -0.3633 -0.8899 0.5139
23 1 -0.3634 0.8901 0.5139
24 1 1.6583 2.1314 -0.0004
25 1 5.3576 0.0016 -0.0005
26 1 6.2049 -1.6159 0.0549
27 1 5.6102 -2.0244 1.5532
28 1 6.1249 -5.7095 -0.8497
29 1 1.9904 -3.2534 -0.0127
30 1 0.5343 -2.4152 -0.0158
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238529241.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:22
Heat of formation + Delta-G solvation = -44.449492 kcal
Electronic energy + Delta-G solvation = -15292.338032 eV
Core-core repulsion = 12614.578092 eV
Total energy + Delta-G solvation = -2677.759940 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 224.102 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-49.62209 -40.61648 -36.58651 -35.13018 -33.88751 -32.14096 -29.31264 -28.14794
-27.42541 -24.69636 -22.35009 -21.24264 -18.57035 -18.31054 -18.02148 -17.47586
-16.54376 -16.38379 -15.93774 -15.86009 -14.78499 -14.67009 -14.58513 -14.22366
-13.96091 -13.64384 -13.17299 -12.92877 -12.69763 -12.62000 -12.55113 -12.11271
-11.54017 -11.25515 -11.15667 -10.55303 -9.54974 -8.92351 -8.17971 -7.92974
-6.17593 0.44242 0.58755 1.40617 1.45186 1.54156 2.46079 2.85043
3.18341 3.26711 3.54648 3.94273 3.99523 4.27033 4.47272 4.51418
4.73518 4.84481 4.89291 5.04684 5.19739 5.31386 5.34858 5.53501
5.69573 5.79277 6.05338 6.18013 6.65034 6.70910 7.07825 7.14379
7.26742 7.54651 9.05345
Molecular weight = 224.10amu
Principal moments of inertia in cm(-1)
A = 0.028793 B = 0.009116 C = 0.008067
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 972.211090 B = 3070.950821 C = 3470.187268
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.098 4.098
2 C -0.149 4.149
3 C -0.119 4.119
4 C 0.015 3.985
5 F -0.157 7.157
6 C -0.131 4.131
7 C -0.148 4.148
8 C 0.270 3.730
9 H 0.024 0.976
10 N -0.822 5.822
11 C -0.531 4.531
12 H 0.039 0.961
13 C 0.040 3.960
14 N -0.876 5.876
15 Si 0.942 3.058
16 H -0.275 1.275
17 H -0.286 1.286
18 H -0.278 1.278
19 C 0.206 3.794
20 N -0.861 5.861
21 H 0.075 0.925
22 H 0.071 0.929
23 H 0.084 0.916
24 H 0.153 0.847
25 H 0.120 0.880
26 H 0.321 0.679
27 H 0.311 0.689
28 H 0.255 0.745
29 H 0.402 0.598
30 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.909 8.064 1.877 12.913
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.155 4.155
3 C -0.138 4.138
4 C -0.006 4.006
5 F -0.137 7.137
6 C -0.151 4.151
7 C -0.155 4.155
8 C 0.160 3.840
9 H 0.042 0.958
10 N -0.349 5.349
11 C -0.570 4.570
12 H 0.057 0.943
13 C -0.164 4.164
14 N -0.512 5.512
15 Si 0.769 3.231
16 H -0.200 1.200
17 H -0.213 1.213
18 H -0.204 1.204
19 C 0.099 3.901
20 N -0.402 5.402
21 H 0.093 0.907
22 H 0.090 0.910
23 H 0.103 0.897
24 H 0.170 0.830
25 H 0.138 0.862
26 H 0.134 0.866
27 H 0.122 0.878
28 H 0.064 0.936
29 H 0.232 0.768
30 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges -9.651 7.152 1.778 12.143
hybrid contribution 0.329 0.372 -0.791 0.934
sum -9.322 7.524 0.987 12.020
Atomic orbital electron populations
1.20626 0.88186 1.03704 1.02903 1.19513 0.97693 0.90100 1.08156
1.20847 0.91224 0.99320 1.02454 1.17518 0.90892 0.80442 1.11715
1.91386 1.80880 1.46347 1.95046 1.20701 1.00196 0.90961 1.03255
1.20869 0.93389 0.97540 1.03669 1.17675 0.85171 0.86950 0.94198
0.95791 1.59038 1.18719 1.53265 1.03877 1.21034 1.37837 1.06241
0.91889 0.94281 1.25584 0.94687 0.96784 0.99358 1.70215 1.35264
1.14069 1.31628 0.85785 0.77414 0.78128 0.81778 1.20028 1.21259
1.20423 1.17682 0.90495 0.87435 0.94472 1.42592 1.08937 1.05038
1.83588 0.90668 0.90975 0.89732 0.82976 0.86219 0.86601 0.87808
0.93586 0.76822 0.76477
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.98 9.56 71.24 0.68 -1.30 16
2 C -0.15 -4.47 5.90 -19.74 -0.12 -4.59 16
3 C -0.12 -3.64 9.67 22.30 0.22 -3.42 16
4 C 0.02 0.55 7.30 22.38 0.16 0.72 16
5 F -0.16 -5.57 17.26 44.97 0.78 -4.79 16
6 C -0.13 -5.21 9.24 22.29 0.21 -5.00 16
7 C -0.15 -6.15 5.00 -19.74 -0.10 -6.25 16
8 C 0.27 12.96 2.28 43.42 0.10 13.06 16
9 H 0.02 1.25 6.83 -2.39 -0.02 1.24 16
10 N -0.82 -38.53 8.13 -174.97 -1.42 -39.95 16
11 C -0.53 -28.28 8.71 25.60 0.22 -28.06 16
12 H 0.04 2.15 7.74 -2.91 -0.02 2.13 16
13 C 0.04 2.15 5.39 84.66 0.46 2.61 16
14 N -0.88 -49.69 12.77 21.45 0.27 -49.42 16
15 Si 0.94 43.26 29.54 68.60 2.03 45.28 16
16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16
17 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16
18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
19 C 0.21 7.41 6.72 38.17 0.26 7.67 16
20 N -0.86 -27.27 8.90 -51.32 -0.46 -27.72 16
21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
22 H 0.07 1.29 6.56 -2.39 -0.02 1.28 16
23 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16
24 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16
25 H 0.12 4.73 6.29 -2.91 -0.02 4.71 16
26 H 0.32 14.63 7.20 -89.69 -0.65 13.99 16
27 H 0.31 13.14 9.06 -89.69 -0.81 12.33 16
28 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16
29 H 0.40 14.44 6.94 -92.71 -0.64 13.80 16
30 H 0.40 9.71 6.83 -92.71 -0.63 9.07 16
Total: -1.00 -60.92 257.73 1.76 -59.16
By element:
Atomic # 1 Polarization: 43.54 SS G_CDS: -1.52 Total: 42.02 kcal
Atomic # 6 Polarization: -26.66 SS G_CDS: 2.09 Total: -24.57 kcal
Atomic # 7 Polarization: -115.49 SS G_CDS: -1.61 Total: -117.10 kcal
Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.79 kcal
Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal
Total: -60.92 1.76 -59.16 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238529241.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.708 kcal
(2) G-P(sol) polarization free energy of solvation -60.920 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.211 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds