Wall clock time and date at job start Mon Mar 30 2020 03:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38145 * 120.02361 * 2 1 4 4 C 1.38440 * 120.04901 * 180.02562 * 3 2 1 5 5 F 1.35098 * 119.95421 * 180.02562 * 4 3 2 6 6 C 1.38488 * 120.09733 * 359.97438 * 4 3 2 7 7 C 1.38091 * 120.05159 * 0.02562 * 6 4 3 8 8 C 1.50707 * 120.02867 * 179.97438 * 7 6 4 9 9 H 1.08992 * 109.47349 * 145.00306 * 8 7 6 10 10 N 1.46895 * 109.46790 * 25.00103 * 8 7 6 11 11 C 1.50695 * 109.47014 * 265.00447 * 8 7 6 12 12 H 1.08004 * 120.00546 * 0.27454 * 11 8 7 13 13 C 1.37885 * 119.99721 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00035 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99853 * 179.97438 * 13 11 8 16 16 H 1.48494 * 109.47228 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46793 * 120.00131 * 15 13 11 18 18 H 1.48500 * 109.47000 * 240.00224 * 15 13 11 19 19 C 1.38859 * 120.02803 * 180.27408 * 2 1 3 20 20 N 1.39826 * 120.04425 * 0.02562 * 19 2 1 21 21 H 1.08998 * 109.47186 * 90.00023 * 1 2 3 22 22 H 1.08997 * 109.46899 * 210.00500 * 1 2 3 23 23 H 1.09009 * 109.47098 * 330.00103 * 1 2 3 24 24 H 1.07994 * 119.97847 * 359.97438 * 3 2 1 25 25 H 1.08004 * 119.97735 * 180.02562 * 6 4 3 26 26 H 1.00902 * 111.00742 * 300.00069 * 10 8 7 27 27 H 1.00901 * 111.00236 * 63.95448 * 10 8 7 28 28 H 0.97000 * 119.99706 * 179.97438 * 14 13 11 29 29 H 0.97003 * 119.99623 * 180.23077 * 20 19 2 30 30 H 0.96997 * 120.00225 * 0.22900 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5826 1.1967 -0.0005 5 9 4.2566 2.3675 0.0000 6 6 4.2776 -0.0012 -0.0005 7 6 3.5908 -1.1992 -0.0005 8 6 4.3476 -2.5024 -0.0011 9 1 3.8024 -3.2395 0.5883 10 7 5.6792 -2.2955 0.5837 11 6 4.4924 -2.9986 -1.4167 12 1 4.0817 -2.4252 -2.2346 13 6 5.1546 -4.1816 -1.6682 14 7 5.6594 -4.8771 -0.6727 15 14 5.3333 -4.7970 -3.4229 16 1 4.6823 -3.8391 -4.3522 17 1 6.7744 -4.9133 -3.7621 18 1 4.6861 -6.1275 -3.5491 19 6 2.2019 -1.2022 -0.0058 20 7 1.5043 -2.4140 -0.0121 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8899 0.5139 23 1 -0.3634 0.8901 0.5139 24 1 1.6583 2.1314 -0.0004 25 1 5.3576 0.0016 -0.0005 26 1 6.2049 -1.6159 0.0549 27 1 5.6102 -2.0244 1.5532 28 1 6.1249 -5.7095 -0.8497 29 1 1.9904 -3.2534 -0.0127 30 1 0.5343 -2.4152 -0.0158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238529241.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:22 Heat of formation + Delta-G solvation = -44.449492 kcal Electronic energy + Delta-G solvation = -15292.338032 eV Core-core repulsion = 12614.578092 eV Total energy + Delta-G solvation = -2677.759940 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.62209 -40.61648 -36.58651 -35.13018 -33.88751 -32.14096 -29.31264 -28.14794 -27.42541 -24.69636 -22.35009 -21.24264 -18.57035 -18.31054 -18.02148 -17.47586 -16.54376 -16.38379 -15.93774 -15.86009 -14.78499 -14.67009 -14.58513 -14.22366 -13.96091 -13.64384 -13.17299 -12.92877 -12.69763 -12.62000 -12.55113 -12.11271 -11.54017 -11.25515 -11.15667 -10.55303 -9.54974 -8.92351 -8.17971 -7.92974 -6.17593 0.44242 0.58755 1.40617 1.45186 1.54156 2.46079 2.85043 3.18341 3.26711 3.54648 3.94273 3.99523 4.27033 4.47272 4.51418 4.73518 4.84481 4.89291 5.04684 5.19739 5.31386 5.34858 5.53501 5.69573 5.79277 6.05338 6.18013 6.65034 6.70910 7.07825 7.14379 7.26742 7.54651 9.05345 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.009116 C = 0.008067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.211090 B = 3070.950821 C = 3470.187268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.149 4.149 3 C -0.119 4.119 4 C 0.015 3.985 5 F -0.157 7.157 6 C -0.131 4.131 7 C -0.148 4.148 8 C 0.270 3.730 9 H 0.024 0.976 10 N -0.822 5.822 11 C -0.531 4.531 12 H 0.039 0.961 13 C 0.040 3.960 14 N -0.876 5.876 15 Si 0.942 3.058 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.278 1.278 19 C 0.206 3.794 20 N -0.861 5.861 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.153 0.847 25 H 0.120 0.880 26 H 0.321 0.679 27 H 0.311 0.689 28 H 0.255 0.745 29 H 0.402 0.598 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.909 8.064 1.877 12.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.155 4.155 3 C -0.138 4.138 4 C -0.006 4.006 5 F -0.137 7.137 6 C -0.151 4.151 7 C -0.155 4.155 8 C 0.160 3.840 9 H 0.042 0.958 10 N -0.349 5.349 11 C -0.570 4.570 12 H 0.057 0.943 13 C -0.164 4.164 14 N -0.512 5.512 15 Si 0.769 3.231 16 H -0.200 1.200 17 H -0.213 1.213 18 H -0.204 1.204 19 C 0.099 3.901 20 N -0.402 5.402 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.103 0.897 24 H 0.170 0.830 25 H 0.138 0.862 26 H 0.134 0.866 27 H 0.122 0.878 28 H 0.064 0.936 29 H 0.232 0.768 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.651 7.152 1.778 12.143 hybrid contribution 0.329 0.372 -0.791 0.934 sum -9.322 7.524 0.987 12.020 Atomic orbital electron populations 1.20626 0.88186 1.03704 1.02903 1.19513 0.97693 0.90100 1.08156 1.20847 0.91224 0.99320 1.02454 1.17518 0.90892 0.80442 1.11715 1.91386 1.80880 1.46347 1.95046 1.20701 1.00196 0.90961 1.03255 1.20869 0.93389 0.97540 1.03669 1.17675 0.85171 0.86950 0.94198 0.95791 1.59038 1.18719 1.53265 1.03877 1.21034 1.37837 1.06241 0.91889 0.94281 1.25584 0.94687 0.96784 0.99358 1.70215 1.35264 1.14069 1.31628 0.85785 0.77414 0.78128 0.81778 1.20028 1.21259 1.20423 1.17682 0.90495 0.87435 0.94472 1.42592 1.08937 1.05038 1.83588 0.90668 0.90975 0.89732 0.82976 0.86219 0.86601 0.87808 0.93586 0.76822 0.76477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.56 71.24 0.68 -1.30 16 2 C -0.15 -4.47 5.90 -19.74 -0.12 -4.59 16 3 C -0.12 -3.64 9.67 22.30 0.22 -3.42 16 4 C 0.02 0.55 7.30 22.38 0.16 0.72 16 5 F -0.16 -5.57 17.26 44.97 0.78 -4.79 16 6 C -0.13 -5.21 9.24 22.29 0.21 -5.00 16 7 C -0.15 -6.15 5.00 -19.74 -0.10 -6.25 16 8 C 0.27 12.96 2.28 43.42 0.10 13.06 16 9 H 0.02 1.25 6.83 -2.39 -0.02 1.24 16 10 N -0.82 -38.53 8.13 -174.97 -1.42 -39.95 16 11 C -0.53 -28.28 8.71 25.60 0.22 -28.06 16 12 H 0.04 2.15 7.74 -2.91 -0.02 2.13 16 13 C 0.04 2.15 5.39 84.66 0.46 2.61 16 14 N -0.88 -49.69 12.77 21.45 0.27 -49.42 16 15 Si 0.94 43.26 29.54 68.60 2.03 45.28 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 19 C 0.21 7.41 6.72 38.17 0.26 7.67 16 20 N -0.86 -27.27 8.90 -51.32 -0.46 -27.72 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.07 1.29 6.56 -2.39 -0.02 1.28 16 23 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16 24 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 25 H 0.12 4.73 6.29 -2.91 -0.02 4.71 16 26 H 0.32 14.63 7.20 -89.69 -0.65 13.99 16 27 H 0.31 13.14 9.06 -89.69 -0.81 12.33 16 28 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.40 14.44 6.94 -92.71 -0.64 13.80 16 30 H 0.40 9.71 6.83 -92.71 -0.63 9.07 16 Total: -1.00 -60.92 257.73 1.76 -59.16 By element: Atomic # 1 Polarization: 43.54 SS G_CDS: -1.52 Total: 42.02 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: 2.09 Total: -24.57 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -1.61 Total: -117.10 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.78 Total: -4.79 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -60.92 1.76 -59.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238529241.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.708 kcal (2) G-P(sol) polarization free energy of solvation -60.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds