Wall clock time and date at job start Mon Mar 30 2020 03:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09010 * 109.47021 * 2 1 4 4 C 1.50698 * 109.47550 * 119.99970 * 2 1 3 5 5 H 1.08004 * 120.00075 * 119.99970 * 4 2 1 6 6 C 1.37883 * 119.99873 * 300.00674 * 4 2 1 7 7 N 1.31507 * 119.99648 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99988 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46905 * 90.00116 * 8 6 4 10 10 H 1.48499 * 109.46909 * 210.00007 * 8 6 4 11 11 H 1.48500 * 109.47184 * 330.00073 * 8 6 4 12 12 N 1.46498 * 109.47331 * 240.00622 * 2 1 3 13 13 C 1.46508 * 119.99633 * 299.99628 * 12 2 1 14 14 C 1.34772 * 120.00343 * 119.99719 * 12 2 1 15 15 O 1.21609 * 120.00305 * 359.27669 * 14 12 2 16 16 C 1.47398 * 120.00029 * 179.27780 * 14 12 2 17 17 C 1.47104 * 128.56680 * 351.49687 * 16 14 12 18 18 N 1.30016 * 105.33190 * 179.97438 * 17 16 14 19 19 O 1.20663 * 112.30050 * 359.97438 * 18 17 16 20 20 C 1.33487 * 113.15515 * 0.02562 * 19 18 17 21 21 H 1.08996 * 109.47875 * 299.99620 * 1 2 3 22 22 H 1.09001 * 109.47702 * 60.00414 * 1 2 3 23 23 H 1.09005 * 109.46920 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99988 * 179.97438 * 7 6 4 25 25 H 1.09005 * 109.46705 * 264.75263 * 13 12 2 26 26 H 1.08993 * 109.47016 * 24.75514 * 13 12 2 27 27 H 1.09000 * 109.46927 * 144.75700 * 13 12 2 28 28 H 1.08003 * 127.33480 * 359.70861 * 17 16 14 29 29 H 1.08001 * 126.82737 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1372 -0.8596 3.5564 8 14 0.6256 1.2797 2.6542 9 1 -0.8022 0.8742 2.6993 10 1 0.9769 1.9952 3.9071 11 1 0.8488 2.1772 1.4923 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 6 2.7931 -0.0354 -2.0833 15 8 3.0760 1.1326 -1.8976 16 6 3.2976 -0.7348 -3.2788 17 6 3.2198 -2.1672 -3.6044 18 7 3.8029 -2.2892 -4.7600 19 8 4.2062 -1.2336 -5.1831 20 6 3.9555 -0.2096 -4.3642 21 1 -0.3635 0.5137 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9032 -0.5281 4.4375 25 1 2.4616 -2.7355 -1.0539 26 1 0.7360 -2.3246 -0.9062 27 1 1.5326 -2.2627 -2.4967 28 1 2.7769 -2.9513 -3.0082 29 1 4.2173 0.8260 -4.5238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259543433.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:53 Heat of formation + Delta-G solvation = 29.141922 kcal Electronic energy + Delta-G solvation = -15437.686232 eV Core-core repulsion = 12750.744666 eV Total energy + Delta-G solvation = -2686.941567 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.92486 -40.78932 -37.36290 -35.33921 -34.35559 -32.94786 -32.04722 -28.12770 -27.18782 -25.96777 -23.95544 -22.40677 -20.54894 -19.07332 -18.73117 -18.65045 -17.96169 -17.51158 -16.50343 -15.95896 -15.45806 -14.95097 -14.72083 -14.30586 -14.11462 -13.95217 -13.57048 -13.06931 -12.90785 -12.65029 -12.40884 -12.05862 -11.58902 -11.40795 -11.34961 -10.99912 -10.80116 -10.75313 -9.48967 -8.35248 -6.40657 0.13149 0.78941 1.27720 1.37417 1.45799 1.91049 2.18316 2.27099 2.28134 3.00160 3.27681 3.40156 3.72506 4.04934 4.28868 4.43606 4.54718 4.57652 4.62454 4.69791 4.78138 4.89674 5.05397 5.30336 5.45110 5.64677 6.17151 6.57964 6.63906 7.10770 7.17128 7.28575 8.80707 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.050595 B = 0.007559 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.281861 B = 3703.245442 C = 3861.197096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.231 3.769 3 H 0.036 0.964 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.941 3.059 9 H -0.253 1.253 10 H -0.297 1.297 11 H -0.259 1.259 12 N -0.584 5.584 13 C 0.065 3.935 14 C 0.580 3.420 15 O -0.590 6.590 16 C -0.280 4.280 17 C 0.017 3.983 18 N -0.374 5.374 19 O 0.095 5.905 20 C 0.045 3.955 21 H 0.044 0.956 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.269 0.731 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.232 0.768 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 -1.020 -15.089 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.128 3.872 3 H 0.054 0.946 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.768 3.232 9 H -0.178 1.178 10 H -0.224 1.224 11 H -0.184 1.184 12 N -0.312 5.312 13 C -0.077 4.077 14 C 0.370 3.630 15 O -0.474 6.474 16 C -0.287 4.287 17 C -0.165 4.165 18 N -0.081 5.081 19 O 0.037 5.963 20 C -0.038 4.038 21 H 0.062 0.938 22 H 0.077 0.923 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.248 0.752 29 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -1.456 -1.481 -15.625 15.762 hybrid contribution -0.471 0.990 1.594 1.934 sum -1.927 -0.491 -14.031 14.171 Atomic orbital electron populations 1.22332 0.96262 1.02536 1.00164 1.19052 0.92057 0.93563 0.82482 0.94574 1.21340 1.31940 1.13248 0.90156 0.93652 1.25646 0.97110 0.99505 0.95251 1.69998 1.47033 1.42149 0.98647 0.85973 0.79870 0.80115 0.77221 1.17805 1.22446 1.18378 1.47711 1.48590 1.13401 1.21535 1.22428 1.02178 0.80401 1.02670 1.17334 0.78188 0.85395 0.82104 1.90729 1.60840 1.18010 1.77785 1.22318 1.12065 0.94902 0.99436 1.27513 0.99391 0.96188 0.93415 1.73674 1.14875 1.05056 1.14494 1.84565 1.58933 1.11147 1.41609 1.26878 0.92973 0.96457 0.87447 0.93751 0.92326 0.90855 0.92218 0.92334 0.89885 0.87989 0.75194 0.72308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.14 8.66 71.98 0.62 -5.51 15 2 C 0.23 10.81 2.22 44.24 0.10 10.91 15 3 H 0.04 1.90 5.95 -2.38 -0.01 1.89 15 4 C -0.53 -29.08 8.95 25.60 0.23 -28.85 15 5 H 0.05 2.73 7.89 -2.91 -0.02 2.71 15 6 C 0.02 1.35 5.45 84.66 0.46 1.81 15 7 N -0.94 -56.87 13.96 21.45 0.30 -56.57 15 8 Si 0.94 43.96 24.37 68.60 1.67 45.63 15 9 H -0.25 -10.78 6.87 99.48 0.68 -10.10 15 10 H -0.30 -13.92 7.11 99.48 0.71 -13.21 15 11 H -0.26 -11.87 6.53 99.48 0.65 -11.22 15 12 N -0.58 -22.94 2.75 -830.71 -2.29 -25.23 15 13 C 0.07 1.91 8.01 127.77 1.02 2.93 15 14 C 0.58 22.42 7.67 86.66 0.67 23.09 15 15 O -0.59 -27.05 16.32 -4.06 -0.07 -27.12 15 16 C -0.28 -8.00 6.20 -18.74 -0.12 -8.12 15 17 C 0.02 0.40 10.23 87.29 0.89 1.29 15 18 N -0.37 -9.22 12.01 -54.18 -0.65 -9.87 15 19 O 0.10 2.09 11.06 77.04 0.85 2.95 15 20 C 0.04 0.97 12.21 67.61 0.83 1.79 15 21 H 0.04 1.82 3.27 -2.39 -0.01 1.81 15 22 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 23 H 0.07 2.63 6.66 -2.38 -0.02 2.62 15 24 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 25 H 0.06 1.71 7.78 -2.38 -0.02 1.69 15 26 H 0.08 2.40 6.44 -2.39 -0.02 2.38 15 27 H 0.10 2.21 4.78 -2.39 -0.01 2.20 15 28 H 0.23 4.44 5.13 -2.91 -0.01 4.42 15 29 H 0.26 3.74 8.06 -2.91 -0.02 3.71 15 Total: -1.00 -71.08 242.99 5.63 -65.46 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.11 Total: 5.41 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 4.70 Total: -0.66 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -2.64 Total: -91.67 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.79 Total: -24.17 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.67 Total: 45.63 kcal Total: -71.08 5.63 -65.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259543433.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.598 kcal (2) G-P(sol) polarization free energy of solvation -71.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds