Wall clock time and date at job start Mon Mar 30 2020 03:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34713 * 126.66880 * 2 1 4 4 H 0.96995 * 126.52905 * 359.97438 * 3 2 1 5 5 N 1.40164 * 106.95308 * 180.23615 * 3 2 1 6 6 N 1.28711 * 108.67689 * 359.75012 * 5 3 2 7 7 C 1.34613 * 109.55002 * 0.02562 * 6 5 3 8 8 C 1.46770 * 125.91627 * 179.97438 * 7 6 5 9 9 O 1.21307 * 119.99787 * 180.02562 * 8 7 6 10 10 C 1.50703 * 120.00366 * 0.02562 * 8 7 6 11 11 N 1.46498 * 109.47311 * 180.02562 * 10 8 7 12 12 C 1.46497 * 120.00137 * 89.99940 * 11 10 8 13 13 C 1.36935 * 119.99873 * 270.27697 * 11 10 8 14 14 H 1.07998 * 120.00050 * 22.84983 * 13 11 10 15 15 C 1.38811 * 120.00075 * 202.86128 * 13 11 10 16 16 N 1.31625 * 119.99997 * 13.08438 * 15 13 11 17 17 Si 1.86800 * 120.00204 * 193.08713 * 15 13 11 18 18 H 1.48501 * 109.47085 * 89.99910 * 17 15 13 19 19 H 1.48504 * 109.47357 * 209.99775 * 17 15 13 20 20 H 1.48499 * 109.47156 * 329.99797 * 17 15 13 21 21 H 1.09004 * 109.46956 * 270.17470 * 1 2 3 22 22 H 1.08993 * 109.47499 * 30.18159 * 1 2 3 23 23 H 1.09002 * 109.46634 * 150.17994 * 1 2 3 24 24 H 1.08992 * 109.46864 * 59.99738 * 10 8 7 25 25 H 1.09006 * 109.46546 * 300.00436 * 10 8 7 26 26 H 1.08996 * 109.47566 * 95.12954 * 12 11 10 27 27 H 1.09000 * 109.47416 * 215.13358 * 12 11 10 28 28 H 1.08997 * 109.47149 * 335.13024 * 12 11 10 29 29 H 0.96997 * 119.99958 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3115 1.0805 0.0000 4 1 2.0311 2.0091 -0.0003 5 7 3.6309 0.6077 -0.0055 6 7 3.6076 -0.6792 -0.0033 7 6 2.3312 -1.1066 0.0029 8 6 1.8922 -2.5071 0.0066 9 8 0.7083 -2.7716 0.0118 10 6 2.9121 -3.6166 0.0040 11 7 2.2258 -4.9108 0.0079 12 6 1.8779 -5.5593 -1.2588 13 6 1.9044 -5.5118 1.1957 14 1 1.8062 -4.9177 2.0922 15 6 1.7050 -6.8845 1.2474 16 7 2.0700 -7.6412 0.2341 17 14 0.9186 -7.6580 2.7549 18 1 -0.5552 -7.7009 2.5775 19 1 1.4364 -9.0388 2.9300 20 1 1.2492 -6.8493 3.9557 21 1 -0.3633 0.0031 1.0277 22 1 -0.3634 0.8883 -0.5166 23 1 -0.3633 -0.8916 -0.5111 24 1 3.5398 -3.5350 0.8913 25 1 3.5327 -3.5374 -0.8886 26 1 2.6587 -6.2699 -1.5297 27 1 0.9297 -6.0857 -1.1492 28 1 1.7863 -4.8049 -2.0401 29 1 1.9310 -8.6005 0.2704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259615564.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:28 Heat of formation + Delta-G solvation = 56.940358 kcal Electronic energy + Delta-G solvation = -15140.756325 eV Core-core repulsion = 12487.312940 eV Total energy + Delta-G solvation = -2653.443385 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.17515 -39.99238 -37.01052 -35.01888 -33.31794 -32.85918 -29.88856 -28.27025 -27.80604 -24.73541 -24.01115 -22.58501 -20.79555 -18.91587 -18.59121 -17.11619 -17.00575 -16.40246 -15.98517 -15.67712 -15.17943 -14.95351 -14.54678 -14.00454 -13.94817 -13.64071 -13.09295 -13.00884 -12.78071 -12.54207 -12.29384 -12.24973 -12.00030 -11.87071 -11.73324 -10.95599 -10.51303 -10.15812 -8.77769 -7.81559 -5.30915 0.05032 0.46247 1.46006 1.47775 1.49873 1.58175 2.02257 2.51048 2.97326 3.34347 3.41129 3.59861 3.72586 3.89052 4.30230 4.59638 4.62773 4.71559 4.76025 4.85931 4.86625 5.16544 5.33340 5.61917 5.69792 5.93347 6.30141 6.62610 6.97284 7.14830 7.83094 8.27487 9.22276 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.043666 B = 0.006903 C = 0.006653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.070973 B = 4055.241943 C = 4207.542220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.143 3.857 3 N -0.440 5.440 4 H 0.467 0.533 5 N -0.086 5.086 6 N -0.207 5.207 7 C -0.154 4.154 8 C 0.413 3.587 9 O -0.464 6.464 10 C 0.116 3.884 11 N -0.604 5.604 12 C 0.180 3.820 13 C -0.259 4.259 14 H 0.064 0.936 15 C -0.050 4.050 16 N -0.937 5.937 17 Si 0.970 3.030 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.268 1.268 21 H 0.105 0.895 22 H 0.119 0.881 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.023 0.977 29 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 18.594 -1.154 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.002 3.998 3 N -0.156 5.156 4 H 0.318 0.682 5 N -0.067 5.067 6 N -0.082 5.082 7 C -0.293 4.293 8 C 0.286 3.714 9 O -0.336 6.336 10 C -0.012 4.012 11 N -0.325 5.325 12 C 0.035 3.965 13 C -0.389 4.389 14 H 0.081 0.919 15 C -0.245 4.245 16 N -0.583 5.583 17 Si 0.798 3.202 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.193 1.193 21 H 0.124 0.876 22 H 0.137 0.863 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.109 0.891 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.129 18.545 -1.182 18.704 hybrid contribution -1.307 -0.379 0.618 1.494 sum -3.436 18.166 -0.565 18.497 Atomic orbital electron populations 1.20850 0.82353 1.06375 1.05807 1.22905 0.97209 0.86164 0.93510 1.47810 1.05640 1.10582 1.51554 0.68211 1.81791 0.97403 1.03579 1.23933 1.74671 1.20137 1.04229 1.09116 1.22551 0.89414 0.97242 1.20058 1.23109 0.90892 0.87370 0.70043 1.90450 1.20168 1.85650 1.37327 1.21106 0.93060 0.84021 1.03037 1.43845 1.66798 1.18686 1.03189 1.20535 0.97697 0.93342 0.84885 1.19395 1.41120 0.90172 0.88262 0.91857 1.25754 1.01605 0.96575 1.00592 1.70224 1.50923 1.04127 1.33068 0.85231 0.77999 0.77430 0.79569 1.21472 1.21683 1.19316 0.87635 0.86283 0.89316 0.89561 0.89093 0.96780 0.96719 0.95803 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.87 71.24 0.70 -0.82 15 2 C 0.14 3.20 7.35 42.05 0.31 3.51 15 3 N -0.44 -7.84 7.41 -46.60 -0.35 -8.18 15 4 H 0.47 3.50 8.96 -213.29 -1.91 1.58 15 5 N -0.09 -2.29 13.87 37.02 0.51 -1.78 15 6 N -0.21 -6.68 12.21 -49.62 -0.61 -7.28 15 7 C -0.15 -4.91 6.96 40.89 0.28 -4.62 15 8 C 0.41 16.16 7.20 27.92 0.20 16.36 15 9 O -0.46 -20.11 14.87 -3.11 -0.05 -20.16 15 10 C 0.12 5.00 5.89 85.63 0.50 5.50 15 11 N -0.60 -32.14 2.41 -731.34 -1.76 -33.90 15 12 C 0.18 9.47 8.98 127.77 1.15 10.62 15 13 C -0.26 -14.97 9.65 84.03 0.81 -14.16 15 14 H 0.06 3.60 7.86 -2.91 -0.02 3.58 15 15 C -0.05 -2.92 5.10 84.86 0.43 -2.49 15 16 N -0.94 -56.98 10.73 21.65 0.23 -56.75 15 17 Si 0.97 46.66 29.57 68.60 2.03 48.69 15 18 H -0.29 -13.74 7.11 99.48 0.71 -13.03 15 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 15 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 21 H 0.11 1.50 8.14 -2.38 -0.02 1.48 15 22 H 0.12 0.86 8.14 -2.39 -0.02 0.84 15 23 H 0.09 1.96 6.49 -2.39 -0.02 1.95 15 24 H 0.09 3.70 8.04 -2.39 -0.02 3.68 15 25 H 0.09 3.60 8.07 -2.38 -0.02 3.59 15 26 H 0.01 0.78 7.35 -2.39 -0.02 0.76 15 27 H 0.01 0.81 7.33 -2.39 -0.02 0.79 15 28 H 0.02 1.08 8.03 -2.39 -0.02 1.06 15 29 H 0.25 14.65 8.31 -92.71 -0.77 13.88 15 Total: -1.00 -73.70 260.14 3.68 -70.03 By element: Atomic # 1 Polarization: -3.83 SS G_CDS: -0.73 Total: -4.56 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 4.39 Total: 13.89 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -1.97 Total: -107.90 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -73.70 3.68 -70.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615564.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.967 kcal (2) G-P(sol) polarization free energy of solvation -73.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds