Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00058 * 2 1 4 4 C 1.50697 * 109.47249 * 269.99952 * 3 2 1 5 5 H 1.08000 * 119.99567 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00235 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99926 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99988 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47062 * 89.99545 * 8 6 4 10 10 H 1.48494 * 109.46887 * 209.99897 * 8 6 4 11 11 H 1.48507 * 109.47088 * 329.99540 * 8 6 4 12 12 C 1.34771 * 120.00124 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00275 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00175 * 0.02562 * 12 2 1 15 15 C 1.50694 * 109.47380 * 179.97438 * 14 12 2 16 16 C 1.34326 * 126.16708 * 124.98363 * 15 14 12 17 17 O 1.34752 * 107.11592 * 179.80873 * 16 15 14 18 18 C 1.33971 * 107.75443 * 0.36395 * 17 16 15 19 19 N 1.30258 * 108.75619 * 359.62763 * 18 17 16 20 20 H 1.09004 * 109.47196 * 269.99969 * 1 2 3 21 21 H 1.09002 * 109.47329 * 29.99803 * 1 2 3 22 22 H 1.09001 * 109.47272 * 150.00421 * 1 2 3 23 23 H 1.09005 * 109.47424 * 29.99920 * 3 2 1 24 24 H 1.08998 * 109.47547 * 149.99512 * 3 2 1 25 25 H 0.96991 * 120.00183 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46980 * 59.99348 * 14 12 2 27 27 H 1.08999 * 109.46707 * 300.00085 * 14 12 2 28 28 H 1.07999 * 126.44771 * 0.05402 * 16 15 14 29 29 H 1.08002 * 125.62404 * 179.90033 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2416 6 6 3.1260 2.8780 -1.6728 7 7 3.3456 3.2573 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1064 3.5081 0.1229 10 1 3.7478 5.3559 -0.6645 11 1 2.8270 3.7593 0.9114 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3647 -3.6177 0.0005 16 6 2.4072 -4.6243 0.8890 17 8 3.4239 -5.4308 0.5262 18 6 3.9914 -4.9058 -0.5680 19 7 3.3539 -3.8160 -0.8885 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1385 0.5139 25 1 3.8224 4.0831 -3.0900 26 1 0.7590 -2.5302 -0.8897 27 1 0.7584 -2.5298 0.8903 28 1 1.7479 -4.7634 1.7330 29 1 4.8352 -5.3203 -1.0995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259629122.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -1.984554 kcal Electronic energy + Delta-G solvation = -15036.577745 eV Core-core repulsion = 12348.286433 eV Total energy + Delta-G solvation = -2688.291312 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.16346 -38.94544 -35.12294 -34.56480 -32.55940 -31.56028 -28.94417 -27.37618 -25.73026 -22.72440 -22.51848 -21.05968 -18.51650 -17.31906 -16.90716 -16.63276 -15.99905 -15.34437 -15.13024 -14.78526 -14.20108 -13.51437 -13.04293 -12.68634 -12.54696 -12.26170 -11.98172 -11.76757 -11.42505 -10.99891 -10.75925 -10.48372 -10.24924 -10.10063 -9.49210 -9.07500 -8.67015 -8.54227 -7.63890 -6.03738 -4.02016 1.59626 2.87182 2.99515 3.32226 3.38080 3.39982 3.42163 3.94442 4.28785 4.43696 4.89561 4.94845 5.22953 5.33356 5.48401 5.54929 5.66270 5.86145 5.93752 5.98994 6.18821 6.39862 6.74235 6.99146 7.39588 7.66228 7.92470 8.29980 8.52725 8.99531 9.07158 9.56604 11.09898 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040706 B = 0.006817 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.700267 B = 4106.209714 C = 4374.535192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.217 3.783 4 C -0.527 4.527 5 H 0.074 0.926 6 C 0.071 3.929 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.509 3.491 13 O -0.522 6.522 14 C -0.062 4.062 15 C 0.013 3.987 16 C -0.081 4.081 17 O -0.212 6.212 18 C 0.163 3.837 19 N -0.454 5.454 20 H 0.045 0.955 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.264 0.736 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.213 0.787 29 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 -14.242 8.598 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.096 3.904 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.295 3.705 13 O -0.398 6.398 14 C -0.102 4.102 15 C -0.107 4.107 16 C -0.152 4.152 17 O -0.098 6.098 18 C -0.064 4.064 19 N -0.182 5.182 20 H 0.063 0.937 21 H 0.094 0.906 22 H 0.078 0.922 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.229 0.771 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -5.278 -13.724 7.988 16.733 hybrid contribution 0.154 0.309 1.041 1.097 sum -5.124 -13.414 9.029 16.962 Atomic orbital electron populations 1.21669 0.81042 1.03063 1.00347 1.47817 1.06178 1.07014 1.72481 1.19635 0.92396 0.80020 0.98322 1.21352 1.36854 1.06984 0.91344 0.90747 1.24865 0.95277 0.97388 0.95551 1.69900 1.41590 1.23564 1.18645 0.86841 0.80123 0.79695 0.82954 1.19959 1.21104 1.19100 1.20023 0.88161 0.84555 0.77792 1.90700 1.13690 1.86846 1.48548 1.20057 0.95843 0.89752 1.04589 1.21163 0.97805 0.97648 0.94073 1.24635 0.94250 0.93161 1.03123 1.84448 1.37899 1.47406 1.40043 1.28123 1.00530 0.91199 0.86553 1.70407 1.06131 1.14409 1.27270 0.93688 0.90556 0.92159 0.95287 0.94689 0.92619 0.87601 0.87962 0.77092 0.73694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.85 0.61 1.86 15 2 N -0.60 -12.64 2.86 -182.95 -0.52 -13.16 15 3 C 0.22 5.46 4.23 -5.20 -0.02 5.43 15 4 C -0.53 -15.60 9.94 -34.44 -0.34 -15.94 15 5 H 0.07 2.42 8.06 -52.49 -0.42 2.00 15 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 15 7 N -0.90 -28.36 13.96 55.43 0.77 -27.59 15 8 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 15 9 H -0.27 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 15 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 15 12 C 0.51 10.77 7.66 -10.99 -0.08 10.68 15 13 O -0.52 -13.65 15.16 5.56 0.08 -13.56 15 14 C -0.06 -0.92 4.82 -29.04 -0.14 -1.06 15 15 C 0.01 0.21 5.87 -82.82 -0.49 -0.28 15 16 C -0.08 -0.99 12.06 29.35 0.35 -0.64 15 17 O -0.21 -2.69 10.78 5.35 0.06 -2.63 15 18 C 0.16 2.16 13.23 52.09 0.69 2.85 15 19 N -0.45 -8.14 10.68 -11.18 -0.12 -8.26 15 20 H 0.04 0.55 8.14 -51.93 -0.42 0.12 15 21 H 0.08 1.21 8.07 -51.93 -0.42 0.79 15 22 H 0.06 0.73 6.44 -51.93 -0.33 0.40 15 23 H 0.03 0.69 7.13 -51.93 -0.37 0.32 15 24 H 0.04 0.95 6.85 -51.93 -0.36 0.59 15 25 H 0.26 7.76 8.31 -40.82 -0.34 7.42 15 26 H 0.11 1.43 7.40 -51.93 -0.38 1.05 15 27 H 0.10 1.07 8.08 -51.93 -0.42 0.66 15 28 H 0.21 1.60 8.06 -52.49 -0.42 1.18 15 29 H 0.25 2.01 8.06 -52.49 -0.42 1.59 15 LS Contribution 259.77 15.07 3.91 3.91 Total: -1.00 -38.79 259.77 -3.14 -41.93 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -3.14 Total: -2.96 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 0.48 Total: 4.93 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.13 Total: -49.01 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.14 Total: -16.20 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -38.79 -3.14 -41.93 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629122.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.942 kcal (2) G-P(sol) polarization free energy of solvation -38.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds