Wall clock time and date at job start Mon Mar 30 2020 03:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 120.00058 * 2 1 4 4 C 1.50697 * 109.47249 * 269.99952 * 3 2 1 5 5 H 1.08000 * 119.99567 * 359.97438 * 4 3 2 6 6 C 1.37880 * 120.00235 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99926 * 179.97438 * 6 4 3 8 8 Si 1.86798 * 119.99988 * 0.02562 * 6 4 3 9 9 H 1.48494 * 109.47062 * 89.99545 * 8 6 4 10 10 H 1.48494 * 109.46887 * 209.99897 * 8 6 4 11 11 H 1.48507 * 109.47088 * 329.99540 * 8 6 4 12 12 C 1.34771 * 120.00124 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00275 * 180.02562 * 12 2 1 14 14 C 1.50705 * 120.00175 * 0.02562 * 12 2 1 15 15 C 1.50694 * 109.47380 * 179.97438 * 14 12 2 16 16 C 1.34326 * 126.16708 * 124.98363 * 15 14 12 17 17 O 1.34752 * 107.11592 * 179.80873 * 16 15 14 18 18 C 1.33971 * 107.75443 * 0.36395 * 17 16 15 19 19 N 1.30258 * 108.75619 * 359.62763 * 18 17 16 20 20 H 1.09004 * 109.47196 * 269.99969 * 1 2 3 21 21 H 1.09002 * 109.47329 * 29.99803 * 1 2 3 22 22 H 1.09001 * 109.47272 * 150.00421 * 1 2 3 23 23 H 1.09005 * 109.47424 * 29.99920 * 3 2 1 24 24 H 1.08998 * 109.47547 * 149.99512 * 3 2 1 25 25 H 0.96991 * 120.00183 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.46980 * 59.99348 * 14 12 2 27 27 H 1.08999 * 109.46707 * 300.00085 * 14 12 2 28 28 H 1.07999 * 126.44771 * 0.05402 * 16 15 14 29 29 H 1.08002 * 125.62404 * 179.90033 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2416 6 6 3.1260 2.8780 -1.6728 7 7 3.3456 3.2573 -2.9127 8 14 3.7330 3.9292 -0.2530 9 1 5.1064 3.5081 0.1229 10 1 3.7478 5.3559 -0.6645 11 1 2.8270 3.7593 0.9114 12 6 2.1389 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3647 -3.6177 0.0005 16 6 2.4072 -4.6243 0.8890 17 8 3.4239 -5.4308 0.5262 18 6 3.9914 -4.9058 -0.5680 19 7 3.3539 -3.8160 -0.8885 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8900 -0.5138 22 1 -0.3634 -0.8900 -0.5138 23 1 1.6084 2.0284 0.5138 24 1 3.1499 1.1385 0.5139 25 1 3.8224 4.0831 -3.0900 26 1 0.7590 -2.5302 -0.8897 27 1 0.7584 -2.5298 0.8903 28 1 1.7479 -4.7634 1.7330 29 1 4.8352 -5.3203 -1.0995 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259629122.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:00 Heat of formation + Delta-G solvation = -34.562798 kcal Electronic energy + Delta-G solvation = -15037.990444 eV Core-core repulsion = 12348.286433 eV Total energy + Delta-G solvation = -2689.704011 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.16407 -40.55019 -36.66423 -35.85288 -34.71394 -32.81479 -30.66333 -28.69075 -27.21486 -24.51252 -23.61600 -22.29875 -20.04070 -19.15005 -18.35731 -17.94743 -17.25150 -16.98142 -16.53166 -15.97244 -15.85116 -14.94362 -14.63849 -14.34282 -13.99343 -13.64805 -13.55761 -13.14798 -13.07708 -12.77178 -12.42162 -12.04762 -11.98252 -11.75183 -11.32635 -10.84217 -10.66427 -9.74631 -9.34443 -8.34660 -6.39811 0.64405 1.30991 1.36133 1.44527 1.77050 1.86781 2.11355 2.30426 2.48326 2.99671 3.34073 3.81364 3.91411 4.20088 4.40358 4.53134 4.62489 4.69960 4.82997 4.95119 4.96498 5.01998 5.08743 5.40662 5.46473 5.65429 6.24648 6.61647 6.74565 6.92950 7.21395 7.49619 8.82867 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.040706 B = 0.006817 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.700267 B = 4106.209714 C = 4374.535192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.225 3.775 4 C -0.537 4.537 5 H 0.024 0.976 6 C 0.007 3.993 7 N -0.948 5.948 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.235 1.235 12 C 0.495 3.505 13 O -0.586 6.586 14 C -0.046 4.046 15 C -0.036 4.036 16 C -0.052 4.052 17 O -0.211 6.211 18 C 0.168 3.832 19 N -0.523 5.523 20 H 0.086 0.914 21 H 0.062 0.938 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.014 0.986 25 H 0.268 0.732 26 H 0.117 0.883 27 H 0.155 0.845 28 H 0.261 0.739 29 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.639 -15.193 11.326 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.102 3.898 4 C -0.575 4.575 5 H 0.042 0.958 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.158 1.158 12 C 0.284 3.716 13 O -0.466 6.466 14 C -0.086 4.086 15 C -0.155 4.155 16 C -0.123 4.123 17 O -0.097 6.097 18 C -0.059 4.059 19 N -0.252 5.252 20 H 0.105 0.895 21 H 0.081 0.919 22 H 0.110 0.890 23 H 0.071 0.929 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.135 0.865 27 H 0.173 0.827 28 H 0.277 0.723 29 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges -6.816 -14.695 10.725 19.428 hybrid contribution 0.592 0.512 0.108 0.790 sum -6.224 -14.183 10.833 18.901 Atomic orbital electron populations 1.22023 0.77315 1.04046 1.03288 1.47972 1.08581 1.05717 1.72060 1.19290 0.92672 0.82800 0.95030 1.21600 1.36822 1.06585 0.92537 0.95797 1.25920 0.95266 0.99040 0.98788 1.70062 1.42796 1.24530 1.21414 0.85654 0.79442 0.77658 0.79784 1.20477 1.19801 1.15788 1.21221 0.87945 0.86425 0.76011 1.90655 1.16696 1.87942 1.51297 1.20080 0.95453 0.85570 1.07503 1.21487 0.98864 0.99521 0.95625 1.25451 0.93205 0.91149 1.02470 1.84485 1.38011 1.47378 1.39779 1.28863 1.00553 0.90112 0.86335 1.70345 1.08310 1.16825 1.29715 0.89541 0.91915 0.89021 0.92920 0.96789 0.92273 0.86545 0.82708 0.72285 0.70168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.05 10.24 127.77 1.31 3.35 15 2 N -0.61 -25.18 2.86 -851.14 -2.43 -27.61 15 3 C 0.22 11.30 4.23 85.63 0.36 11.66 15 4 C -0.54 -32.92 9.94 25.60 0.25 -32.67 15 5 H 0.02 1.64 8.06 -2.91 -0.02 1.62 15 6 C 0.01 0.45 5.47 84.66 0.46 0.92 15 7 N -0.95 -61.89 13.96 21.45 0.30 -61.59 15 8 Si 0.95 45.76 27.47 68.60 1.88 47.64 15 9 H -0.28 -13.57 7.11 99.48 0.71 -12.86 15 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 11 H -0.23 -10.02 6.54 99.48 0.65 -9.36 15 12 C 0.50 20.81 7.66 87.66 0.67 21.48 15 13 O -0.59 -31.57 15.16 -3.04 -0.05 -31.61 15 14 C -0.05 -1.27 4.82 29.10 0.14 -1.13 15 15 C -0.04 -1.09 5.87 41.26 0.24 -0.84 15 16 C -0.05 -1.11 12.06 66.93 0.81 -0.30 15 17 O -0.21 -4.84 10.78 -3.76 -0.04 -4.88 15 18 C 0.17 4.29 13.23 130.48 1.73 6.01 15 19 N -0.52 -18.79 10.68 -304.07 -3.25 -22.04 15 20 H 0.09 1.69 8.14 -2.38 -0.02 1.67 15 21 H 0.06 1.88 8.07 -2.39 -0.02 1.86 15 22 H 0.09 1.91 6.44 -2.39 -0.02 1.89 15 23 H 0.05 2.39 7.13 -2.38 -0.02 2.37 15 24 H 0.01 0.76 6.85 -2.39 -0.02 0.75 15 25 H 0.27 16.21 8.31 -92.71 -0.77 15.44 15 26 H 0.12 2.89 7.40 -2.39 -0.02 2.87 15 27 H 0.16 2.47 8.08 -2.39 -0.02 2.45 15 28 H 0.26 2.48 8.06 -2.91 -0.02 2.46 15 29 H 0.28 4.24 8.06 -2.91 -0.02 4.22 15 Total: -1.00 -91.50 259.77 3.49 -88.01 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: 1.10 Total: 3.61 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 5.98 Total: 8.48 kcal Atomic # 7 Polarization: -105.86 SS G_CDS: -5.38 Total: -111.24 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.09 Total: -36.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -91.50 3.49 -88.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259629122.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.443 kcal (2) G-P(sol) polarization free energy of solvation -91.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds