Wall clock time and date at job start Mon Mar 30 2020 03:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99739 * 2 1 4 4 C 1.53004 * 109.46594 * 270.27318 * 3 2 1 5 5 C 1.50704 * 109.46758 * 180.02562 * 4 3 2 6 6 H 1.07999 * 120.00197 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00022 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99578 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99937 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47111 * 89.99610 * 9 7 5 11 11 H 1.48504 * 109.46813 * 209.99178 * 9 7 5 12 12 H 1.48497 * 109.47161 * 329.99633 * 9 7 5 13 13 C 1.34770 * 120.00297 * 180.27025 * 2 1 3 14 14 O 1.21608 * 120.00481 * 176.36917 * 13 2 1 15 15 C 1.47403 * 119.99789 * 356.37278 * 13 2 1 16 16 C 1.47099 * 128.56817 * 353.32813 * 15 13 2 17 17 N 1.30014 * 105.33330 * 179.89322 * 16 15 13 18 18 O 1.20663 * 112.29584 * 0.39847 * 17 16 15 19 19 C 1.33490 * 113.16124 * 359.73078 * 18 17 16 20 20 H 1.08995 * 109.47008 * 265.26812 * 1 2 3 21 21 H 1.08998 * 109.47485 * 25.27207 * 1 2 3 22 22 H 1.08999 * 109.47024 * 145.27450 * 1 2 3 23 23 H 1.09000 * 109.47514 * 30.26809 * 3 2 1 24 24 H 1.09001 * 109.47373 * 150.27482 * 3 2 1 25 25 H 1.08994 * 109.47505 * 299.99493 * 4 3 2 26 26 H 1.08994 * 109.47395 * 60.00263 * 4 3 2 27 27 H 0.97008 * 119.99716 * 180.02562 * 8 7 5 28 28 H 1.08005 * 127.33037 * 0.02562 * 16 15 13 29 29 H 1.07993 * 126.82957 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4464 1.7138 -1.4426 5 6 3.2004 3.0186 -1.4426 6 1 3.4743 3.4842 -0.5074 7 6 3.5398 3.6187 -2.6367 8 7 3.2059 3.0521 -3.7755 9 14 4.4750 5.2358 -2.6367 10 1 5.9348 4.9633 -2.6445 11 1 4.1111 6.0180 -3.8455 12 1 4.1227 6.0114 -1.4204 13 6 2.1389 -1.1671 -0.0055 14 8 3.3532 -1.1679 -0.0722 15 6 1.4041 -2.4427 0.0692 16 6 -0.0340 -2.6613 0.2879 17 7 -0.1924 -3.9516 0.2694 18 8 0.8475 -4.5380 0.0941 19 6 1.8944 -3.7211 -0.0421 20 1 -0.3633 -0.0848 1.0241 21 1 -0.3634 0.9293 -0.4387 22 1 -0.3633 -0.8446 -0.5854 23 1 1.6105 2.0272 0.5180 24 1 3.1520 1.1373 0.5096 25 1 3.0334 0.9555 -1.9606 26 1 1.4920 1.8453 -1.9521 27 1 3.4450 3.4741 -4.6157 28 1 -0.7963 -1.9097 0.4311 29 1 2.9223 -4.0082 -0.2074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259664339.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:49 Heat of formation + Delta-G solvation = 37.311342 kcal Electronic energy + Delta-G solvation = -14952.094981 eV Core-core repulsion = 12265.507667 eV Total energy + Delta-G solvation = -2686.587314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.96935 -39.38078 -35.54716 -33.99037 -32.93731 -31.90813 -30.03982 -26.94248 -25.67161 -23.71886 -22.72259 -20.99351 -19.44024 -17.73493 -17.71616 -17.11026 -16.55463 -15.36201 -15.00901 -14.47402 -14.35778 -13.48741 -13.26848 -12.88954 -12.65984 -12.29407 -11.80566 -11.61692 -11.35913 -10.94037 -10.73408 -10.43148 -9.96945 -9.91793 -9.75403 -9.68224 -9.18497 -8.37678 -8.11432 -6.02828 -4.06189 1.12939 1.74883 2.91899 3.30427 3.31583 3.37864 3.41067 3.49382 4.20815 4.32290 4.45075 4.75003 5.02387 5.23152 5.33489 5.44177 5.47103 5.67793 5.80121 6.06192 6.46732 6.77161 6.83666 7.52891 7.67003 7.86547 7.96934 8.07171 8.31997 8.48779 9.00397 9.57812 11.08641 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.059388 B = 0.005604 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.366294 B = 4994.976362 C = 5107.248695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.600 5.600 3 C 0.118 3.882 4 C 0.012 3.988 5 C -0.522 4.522 6 H 0.057 0.943 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.586 3.414 14 O -0.531 6.531 15 C -0.249 4.249 16 C 0.005 3.995 17 N -0.361 5.361 18 O 0.090 5.910 19 C 0.016 3.984 20 H 0.055 0.945 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.261 0.739 28 H 0.212 0.788 29 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.881 -10.371 7.877 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.331 5.331 3 C -0.002 4.002 4 C -0.026 4.026 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 C 0.373 3.627 14 O -0.409 6.409 15 C -0.257 4.257 16 C -0.177 4.177 17 N -0.067 5.067 18 O 0.030 5.970 19 C -0.066 4.066 20 H 0.073 0.927 21 H 0.100 0.900 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.041 0.959 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.228 0.772 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -7.276 -11.144 7.791 15.421 hybrid contribution 0.900 1.690 -0.272 1.934 sum -6.375 -9.454 7.519 13.659 Atomic orbital electron populations 1.22282 0.80750 1.04066 1.00902 1.47854 1.06669 1.06807 1.71795 1.21957 0.95649 0.80793 1.01797 1.19398 0.97138 0.96453 0.89612 1.21087 1.36349 1.06085 0.92518 0.92463 1.25004 0.95941 0.97784 0.95577 1.69977 1.46661 1.39264 0.97298 0.86549 0.80259 0.83438 0.77482 1.20567 1.21228 1.19824 1.16856 0.86387 0.82003 0.77441 1.90829 1.12954 1.86872 1.50260 1.22638 0.93788 0.95882 1.13343 1.27234 0.95990 0.93129 1.01368 1.73664 1.05642 1.09162 1.18234 1.84558 1.11234 1.35340 1.65867 1.26368 0.95137 0.88497 0.96642 0.92655 0.89982 0.90844 0.91442 0.90706 0.95880 0.96551 0.92940 0.77151 0.75253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 8.76 59.85 0.52 1.32 15 2 N -0.60 -10.51 2.87 -182.86 -0.53 -11.04 15 3 C 0.12 2.45 5.30 -4.04 -0.02 2.43 15 4 C 0.01 0.31 5.30 -27.88 -0.15 0.16 15 5 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 15 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 8 N -0.89 -27.00 13.29 55.43 0.74 -26.26 15 9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 15 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 12 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 13 C 0.59 10.66 7.67 -12.53 -0.10 10.56 15 14 O -0.53 -11.66 16.60 5.27 0.09 -11.58 15 15 C -0.25 -3.51 6.20 -102.89 -0.64 -4.15 15 16 C 0.00 0.05 10.24 -14.73 -0.15 -0.10 15 17 N -0.36 -4.58 12.01 31.80 0.38 -4.20 15 18 O 0.09 1.05 11.06 18.66 0.21 1.26 15 19 C 0.02 0.18 12.21 30.42 0.37 0.55 15 20 H 0.06 0.53 7.71 -51.93 -0.40 0.13 15 21 H 0.08 1.03 8.04 -51.93 -0.42 0.61 15 22 H 0.07 0.81 4.92 -51.93 -0.26 0.55 15 23 H 0.07 1.26 8.07 -51.93 -0.42 0.84 15 24 H 0.07 1.64 7.47 -51.93 -0.39 1.26 15 25 H 0.02 0.67 8.14 -51.93 -0.42 0.25 15 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 15 28 H 0.21 1.89 5.10 -52.48 -0.27 1.62 15 29 H 0.23 1.95 8.06 -52.49 -0.42 1.53 15 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -33.93 258.62 -3.76 -37.69 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: -2.96 Total: -3.73 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.57 Total: -2.67 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.59 Total: -41.50 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.29 Total: -10.32 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -33.93 -3.76 -37.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259664339.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.004 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds