Wall clock time and date at job start Mon Mar 30 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47255 * 90.00191 * 8 6 4 10 10 H 1.48503 * 109.46900 * 210.00227 * 8 6 4 11 11 H 1.48494 * 109.46968 * 329.99883 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.50701 * 109.47355 * 180.02562 * 15 13 12 17 17 C 1.34331 * 126.16158 * 125.00228 * 16 15 13 18 18 O 1.34752 * 107.10823 * 180.02562 * 17 16 15 19 19 C 1.33967 * 107.75750 * 359.97438 * 18 17 16 20 20 N 1.30257 * 108.75996 * 359.72914 * 19 18 17 21 21 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 22 22 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 23 23 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 24 24 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 25 25 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 26 26 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 27 27 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 28 28 H 1.07999 * 126.44615 * 0.02562 * 17 16 15 29 29 H 1.07996 * 125.61905 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3428 -2.1618 -4.4119 10 1 2.4865 -0.1414 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 6 2.7159 0.2438 4.7371 17 6 2.1261 0.0871 5.9338 18 8 2.4234 1.1773 6.6680 19 6 3.1867 1.9810 5.9156 20 7 3.3695 1.4189 4.7548 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 0.7094 1.1618 -3.4844 25 1 2.2491 -1.6318 1.1526 26 1 1.9894 -1.5476 3.8337 27 1 3.6590 -1.1179 3.3911 28 1 1.5265 -0.7543 6.2483 29 1 3.5885 2.9352 6.2226 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259708634.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:13 Heat of formation + Delta-G solvation = -17.889418 kcal Electronic energy + Delta-G solvation = -14872.831498 eV Core-core repulsion = 12183.850500 eV Total energy + Delta-G solvation = -2688.980999 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.17707 -38.73108 -35.11198 -34.45074 -32.37271 -31.54793 -29.16225 -27.30915 -25.21414 -22.65853 -21.98926 -20.63951 -19.31786 -17.52707 -17.00517 -16.36899 -15.57812 -15.19952 -15.08367 -14.65152 -14.12332 -13.65942 -12.84679 -12.64694 -12.31872 -12.13421 -11.52300 -11.09001 -10.93451 -10.85537 -10.66973 -10.29310 -10.27636 -10.20408 -9.06984 -9.00180 -8.67778 -8.51057 -7.82656 -6.08820 -4.17992 1.58771 2.85334 2.98493 3.26210 3.32972 3.35403 3.50502 4.16972 4.27431 4.43058 4.91925 5.03391 5.23212 5.52990 5.59552 5.65515 5.92836 6.00541 6.39936 6.86587 7.00467 7.19866 7.52941 7.61985 7.73973 7.89593 7.96795 8.19340 8.73602 8.83564 9.22703 9.49921 10.97223 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.066647 B = 0.005464 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.024707 B = 5123.524840 C = 5187.451402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.713 5.713 13 C 0.503 3.497 14 O -0.538 6.538 15 C -0.066 4.066 16 C 0.015 3.985 17 C -0.080 4.080 18 O -0.211 6.211 19 C 0.162 3.838 20 N -0.457 5.457 21 H 0.013 0.987 22 H 0.089 0.911 23 H 0.026 0.974 24 H 0.264 0.736 25 H 0.388 0.612 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.213 0.787 29 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 -4.102 14.600 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.361 5.361 13 C 0.287 3.713 14 O -0.415 6.415 15 C -0.107 4.107 16 C -0.105 4.105 17 C -0.151 4.151 18 O -0.098 6.098 19 C -0.065 4.065 20 N -0.185 5.185 21 H 0.032 0.968 22 H 0.108 0.892 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.220 0.780 26 H 0.121 0.879 27 H 0.123 0.877 28 H 0.229 0.771 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 2.673 -2.839 14.012 14.544 hybrid contribution -0.013 -1.157 -0.402 1.225 sum 2.660 -3.996 13.610 14.432 Atomic orbital electron populations 1.22071 0.98600 0.98988 1.00806 1.18711 0.90909 0.94036 0.80045 0.93426 1.21234 1.32334 1.13157 0.90374 0.92078 1.24900 0.94873 0.94959 0.99064 1.69909 1.35998 1.22431 1.23817 0.86446 0.79145 0.79249 0.82239 1.20579 1.21092 1.19861 1.46482 1.65672 1.13402 1.10586 1.20106 0.79157 0.87642 0.84412 1.90686 1.50218 1.15779 1.84824 1.20065 1.03885 0.95963 0.90761 1.21146 0.99524 0.94576 0.95300 1.24665 1.06044 0.92196 0.92181 1.84446 1.54920 1.26986 1.43409 1.28089 0.94411 0.98355 0.85666 1.70365 1.21363 1.06866 1.19881 0.96779 0.89221 0.95530 0.92616 0.78036 0.87896 0.87750 0.77060 0.73754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 15 2 C 0.26 6.91 2.56 -69.08 -0.18 6.74 15 3 H 0.05 1.45 7.57 -51.93 -0.39 1.06 15 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 15 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 15 7 N -0.88 -25.37 11.32 55.43 0.63 -24.74 15 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 15 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 12 N -0.71 -15.06 5.07 -54.93 -0.28 -15.34 15 13 C 0.50 10.35 7.79 -10.98 -0.09 10.26 15 14 O -0.54 -13.62 15.25 5.55 0.08 -13.53 15 15 C -0.07 -0.96 6.27 -29.03 -0.18 -1.14 15 16 C 0.01 0.23 5.87 -82.81 -0.49 -0.26 15 17 C -0.08 -0.98 12.06 29.35 0.35 -0.63 15 18 O -0.21 -2.65 10.78 5.36 0.06 -2.59 15 19 C 0.16 2.06 13.23 52.09 0.69 2.75 15 20 N -0.46 -7.80 10.70 -11.18 -0.12 -7.92 15 21 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.09 2.47 6.07 -51.93 -0.32 2.16 15 23 H 0.03 0.62 8.14 -51.92 -0.42 0.20 15 24 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 25 H 0.39 6.88 8.54 -40.82 -0.35 6.53 15 26 H 0.10 1.09 8.11 -51.93 -0.42 0.67 15 27 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.21 1.65 8.06 -52.49 -0.42 1.22 15 29 H 0.25 1.85 8.06 -52.49 -0.42 1.43 15 LS Contribution 261.92 15.07 3.95 3.95 Total: -1.00 -35.10 261.92 -3.77 -38.87 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.13 Total: 4.05 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 0.06 Total: 1.39 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.23 Total: -47.99 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.14 Total: -16.12 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -35.10 -3.77 -38.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708634.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.985 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds