Wall clock time and date at job start Mon Mar 30 2020 03:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47379 * 2 1 4 4 C 1.50700 * 109.47399 * 239.99622 * 2 1 3 5 5 H 1.08000 * 120.00086 * 240.00110 * 4 2 1 6 6 C 1.37872 * 120.00222 * 60.00381 * 4 2 1 7 7 N 1.31524 * 119.99687 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00456 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46772 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47094 * 119.99574 * 8 6 4 11 11 H 1.48502 * 109.47245 * 239.99997 * 8 6 4 12 12 C 1.53003 * 109.46895 * 119.99947 * 2 1 3 13 13 C 1.52999 * 109.47464 * 65.94697 * 12 2 1 14 14 C 1.53005 * 109.46842 * 305.94959 * 12 2 1 15 15 C 1.50701 * 109.47049 * 185.95123 * 12 2 1 16 16 C 1.33397 * 125.20194 * 176.20637 * 15 12 2 17 17 C 1.38414 * 114.92088 * 180.02562 * 16 15 12 18 18 C 1.33392 * 114.92282 * 0.25376 * 17 16 15 19 19 S 1.75877 * 125.20437 * 356.25252 * 15 12 2 20 20 H 1.09003 * 109.47050 * 184.80855 * 1 2 3 21 21 H 1.08999 * 109.47314 * 304.81521 * 1 2 3 22 22 H 1.08999 * 109.46765 * 64.81655 * 1 2 3 23 23 H 0.97000 * 119.99658 * 180.02562 * 7 6 4 24 24 H 1.09002 * 109.47203 * 179.97438 * 13 12 2 25 25 H 1.08996 * 109.47243 * 300.00794 * 13 12 2 26 26 H 1.09009 * 109.46644 * 60.00270 * 13 12 2 27 27 H 1.08999 * 109.47070 * 300.00059 * 14 12 2 28 28 H 1.09003 * 109.46976 * 60.00192 * 14 12 2 29 29 H 1.09002 * 109.46949 * 180.02562 * 14 12 2 30 30 H 1.08003 * 122.53517 * 0.06631 * 16 15 12 31 31 H 1.08001 * 122.53946 * 179.97438 * 17 16 15 32 32 H 1.07995 * 125.20344 * 179.75308 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9429 0.8296 -2.6034 8 14 2.3228 -1.1197 -4.0079 9 1 3.1486 -2.2858 -3.6036 10 1 1.1681 -1.5869 -4.8164 11 1 3.1476 -0.1860 -4.8160 12 6 2.0399 -0.7213 1.2493 13 6 1.6556 -2.2004 1.1769 14 6 1.4114 -0.0914 2.4940 15 6 3.5397 -0.5950 1.3252 16 6 4.2998 -1.0457 2.3245 17 6 5.6563 -0.8143 2.1757 18 6 5.9975 -0.1710 1.0580 19 16 4.5556 0.1702 0.1104 20 1 -0.3633 -1.0241 0.0861 21 1 -0.3634 0.5867 0.8437 22 1 -0.3633 0.4373 -0.9300 23 1 0.7084 1.1607 -3.4845 24 1 2.0194 -2.7143 2.0667 25 1 0.5709 -2.2917 1.1219 26 1 2.1034 -2.6491 0.2901 27 1 1.6852 0.9624 2.5456 28 1 0.3266 -0.1828 2.4391 29 1 1.7751 -0.6050 3.3841 30 1 3.8879 -1.5533 3.1842 31 1 6.3830 -1.1268 2.9110 32 1 7.0051 0.0975 0.7771 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:01 Heat of formation + Delta-G solvation = 2.820602 kcal Electronic energy + Delta-G solvation = -13896.645556 eV Core-core repulsion = 11754.855826 eV Total energy + Delta-G solvation = -2141.789730 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68018 -37.44792 -34.46482 -30.98151 -29.09015 -28.29930 -26.85736 -25.26556 -23.45886 -20.19941 -19.45059 -18.31228 -17.50119 -16.47677 -16.12715 -15.16024 -14.95940 -14.54138 -14.25965 -13.66940 -13.39872 -13.19278 -13.11631 -12.88826 -12.59400 -12.44658 -12.37333 -12.28173 -11.95180 -11.86637 -11.57537 -11.09129 -10.71324 -10.63790 -10.33344 -9.23815 -9.11038 -8.01927 -6.08980 0.41967 1.10737 1.37832 1.43059 1.51722 1.60304 2.09764 2.46880 3.29017 4.01480 4.30450 4.41957 4.45256 4.61691 4.83384 4.88633 4.94361 4.99033 5.07224 5.17699 5.22859 5.29104 5.37783 5.46120 5.54432 5.59215 5.69339 5.74239 5.90335 6.02217 6.25264 6.47039 6.98022 7.55589 9.02770 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.012902 C = 0.009973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.136659 B = 2169.610706 C = 2807.004457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.051 3.949 3 H -0.006 1.006 4 C -0.492 4.492 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.915 5.915 8 Si 0.929 3.071 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.004 3.996 13 C -0.116 4.116 14 C -0.128 4.128 15 C -0.143 4.143 16 C -0.168 4.168 17 C -0.137 4.137 18 C -0.265 4.265 19 S 0.099 5.901 20 H 0.036 0.964 21 H 0.029 0.971 22 H 0.052 0.948 23 H 0.256 0.744 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.150 0.850 31 H 0.156 0.844 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.296 -3.463 9.090 11.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.032 3.968 3 H 0.012 0.988 4 C -0.532 4.532 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.556 5.556 8 Si 0.757 3.243 9 H -0.192 1.192 10 H -0.210 1.210 11 H -0.212 1.212 12 C 0.002 3.998 13 C -0.174 4.174 14 C -0.186 4.186 15 C -0.261 4.261 16 C -0.198 4.198 17 C -0.168 4.168 18 C -0.401 4.401 19 S 0.366 5.634 20 H 0.055 0.945 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.168 0.832 31 H 0.174 0.826 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.022 -2.630 7.562 9.451 hybrid contribution 0.450 -0.768 -0.044 0.891 sum 5.472 -3.397 7.519 9.900 Atomic orbital electron populations 1.21764 0.98208 0.98923 1.00100 1.18717 0.93105 0.93687 0.91338 0.98838 1.21387 1.29159 1.11641 0.91003 0.92667 1.25505 0.95579 0.95577 1.01156 1.70019 1.38073 1.24202 1.23307 0.85925 0.78212 0.79131 0.81057 1.19229 1.21013 1.21164 1.19256 0.87023 0.96968 0.96568 1.21736 1.01012 0.93870 1.00809 1.21868 1.00779 0.99742 0.96169 1.24757 0.99702 1.04250 0.97378 1.20232 0.93355 1.05535 1.00630 1.20293 0.96107 1.01741 0.98634 1.26215 1.03608 1.09428 1.00811 1.85502 0.96961 1.57494 1.23463 0.94521 0.95166 0.92931 0.93418 0.92141 0.92381 0.93924 0.94099 0.91674 0.91311 0.83236 0.82607 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.21 71.98 0.59 -5.57 16 2 C 0.05 2.41 1.27 -11.54 -0.01 2.40 16 3 H -0.01 -0.35 7.78 -2.39 -0.02 -0.37 16 4 C -0.49 -25.56 5.69 25.60 0.15 -25.42 16 5 H 0.06 2.90 6.08 -2.91 -0.02 2.89 16 6 C 0.02 1.09 5.29 84.65 0.45 1.54 16 7 N -0.92 -52.23 11.29 21.45 0.24 -51.99 16 8 Si 0.93 43.64 29.54 68.60 2.03 45.67 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 12 C 0.00 0.14 0.46 -52.92 -0.02 0.12 16 13 C -0.12 -4.20 7.80 71.98 0.56 -3.64 16 14 C -0.13 -4.20 7.78 71.98 0.56 -3.64 16 15 C -0.14 -5.47 4.82 24.59 0.12 -5.36 16 16 C -0.17 -5.37 9.35 21.22 0.20 -5.17 16 17 C -0.14 -4.02 10.18 21.21 0.22 -3.81 16 18 C -0.27 -8.46 11.23 66.72 0.75 -7.71 16 19 S 0.10 4.01 20.24 -56.49 -1.14 2.86 16 20 H 0.04 1.59 6.39 -2.39 -0.02 1.58 16 21 H 0.03 1.24 6.63 -2.39 -0.02 1.22 16 22 H 0.05 2.78 5.96 -2.39 -0.01 2.77 16 23 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 24 H 0.06 1.82 8.03 -2.39 -0.02 1.80 16 25 H 0.06 2.03 6.50 -2.39 -0.02 2.02 16 26 H 0.04 1.71 6.27 -2.38 -0.01 1.70 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.06 2.06 6.44 -2.39 -0.02 2.04 16 29 H 0.07 1.88 7.71 -2.39 -0.02 1.87 16 30 H 0.15 4.02 7.84 -2.91 -0.02 3.99 16 31 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 32 H 0.17 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -58.07 262.68 5.77 -52.30 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.10 Total: 7.41 kcal Atomic # 6 Polarization: -59.80 SS G_CDS: 3.55 Total: -56.25 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.24 Total: -51.99 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.14 Total: 2.86 kcal Total: -58.07 5.77 -52.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.118 kcal (2) G-P(sol) polarization free energy of solvation -58.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds