Wall clock time and date at job start Mon Mar 30 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99604 * 2 1 4 4 C 1.50695 * 109.46777 * 180.02562 * 3 2 1 5 5 N 1.32042 * 118.77082 * 270.01846 * 4 3 2 6 6 C 1.32019 * 121.25213 * 179.68014 * 5 4 3 7 7 C 1.40914 * 118.83271 * 0.57162 * 6 5 4 8 8 C 1.41182 * 121.08414 * 179.72178 * 7 6 5 9 9 H 1.07995 * 120.00212 * 154.76706 * 8 7 6 10 10 C 1.39961 * 119.99510 * 334.76666 * 8 7 6 11 11 N 1.30859 * 119.99933 * 334.92440 * 10 8 7 12 12 Si 1.86797 * 119.99844 * 154.93041 * 10 8 7 13 13 H 1.48494 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.46845 * 299.99787 * 12 10 8 15 15 H 1.48494 * 109.47240 * 59.99581 * 12 10 8 16 16 C 1.41863 * 117.83226 * 359.44669 * 7 6 5 17 17 O 1.35279 * 120.68576 * 180.25133 * 16 7 6 18 18 C 1.42894 * 117.00188 * 180.02562 * 17 16 7 19 19 N 1.31869 * 118.77302 * 89.99829 * 4 3 2 20 20 H 1.08994 * 109.47153 * 60.00335 * 1 2 3 21 21 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47092 * 299.99886 * 1 2 3 23 23 H 1.08994 * 109.47393 * 59.99627 * 3 2 1 24 24 H 1.09002 * 109.46652 * 299.99858 * 3 2 1 25 25 H 1.08004 * 120.58054 * 180.29446 * 6 5 4 26 26 H 0.96996 * 119.99784 * 354.23099 * 11 10 8 27 27 H 1.09008 * 109.46992 * 180.02562 * 18 17 16 28 28 H 1.08998 * 109.46900 * 299.99880 * 18 17 16 29 29 H 1.08994 * 109.47227 * 60.00244 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.1465 1.1358 1.1565 6 6 5.4608 1.0254 1.2131 7 6 6.1909 0.9736 0.0090 8 6 7.5983 0.8617 0.0141 9 1 8.1084 0.4256 -0.8320 10 6 8.3323 1.3159 1.1158 11 7 7.8400 2.2487 1.8904 12 14 10.0148 0.5909 1.4802 13 1 10.5807 1.2376 2.6913 14 1 9.8842 -0.8698 1.7137 15 1 10.9171 0.8287 0.3251 16 6 5.4652 1.0317 -1.2086 17 8 6.1075 0.9814 -2.3982 18 6 5.2995 1.0465 -3.5749 19 7 4.1448 1.1366 -1.1568 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8465 0.8899 24 1 1.6885 1.8464 -0.8900 25 1 5.9679 0.9800 2.1656 26 1 7.0058 2.6842 1.6552 27 1 5.9378 0.9959 -4.4572 28 1 4.6017 0.2093 -3.5833 29 1 4.7429 1.9836 -3.5821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865097.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:00 Heat of formation + Delta-G solvation = -52.214213 kcal Electronic energy + Delta-G solvation = -15175.382922 eV Core-core repulsion = 12484.913489 eV Total energy + Delta-G solvation = -2690.469433 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63413 -37.53723 -36.85975 -34.71468 -31.60753 -30.72790 -28.12803 -26.62687 -25.87005 -24.17781 -22.30003 -21.33054 -18.25630 -17.34568 -16.67152 -16.00750 -15.08444 -15.00834 -14.73075 -14.41000 -13.95811 -13.63736 -12.97576 -12.74784 -12.23572 -11.88872 -11.75396 -11.32935 -11.25785 -11.04148 -10.68144 -10.57494 -10.49814 -9.60728 -9.28125 -9.18546 -8.90845 -8.14699 -7.90905 -7.46028 -4.65709 2.27184 2.62448 3.06467 3.13301 3.28045 3.84756 4.09003 4.14833 4.53192 5.23023 5.37979 5.43775 5.56269 5.62014 5.80610 5.82329 5.84671 5.89269 6.07671 6.22463 6.33021 6.63149 6.82575 7.30311 7.56871 7.62925 7.69492 7.89181 8.32145 8.40970 8.69297 9.59444 9.73101 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.032729 B = 0.008287 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.294261 B = 3378.128522 C = 4015.749336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.163 3.837 4 C 0.162 3.838 5 N -0.480 5.480 6 C 0.013 3.987 7 C 0.005 3.995 8 C -0.463 4.463 9 H 0.091 0.909 10 C 0.033 3.967 11 N -0.774 5.774 12 Si 1.072 2.928 13 H -0.270 1.270 14 H -0.271 1.271 15 H -0.272 1.272 16 C 0.236 3.764 17 O -0.302 6.302 18 C 0.046 3.954 19 N -0.528 5.528 20 H 0.036 0.964 21 H 0.079 0.921 22 H 0.037 0.963 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.153 0.847 26 H 0.301 0.699 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -1.079 -3.524 5.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C 0.085 3.915 4 C -0.099 4.099 5 N -0.196 5.196 6 C -0.154 4.154 7 C -0.003 4.003 8 C -0.491 4.491 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.396 5.396 12 Si 0.894 3.106 13 H -0.195 1.195 14 H -0.196 1.196 15 H -0.197 1.197 16 C 0.043 3.957 17 O -0.208 6.208 18 C -0.050 4.050 19 N -0.257 5.257 20 H 0.054 0.946 21 H 0.098 0.902 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.170 0.830 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.065 0.935 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.542 -1.082 -2.473 4.453 hybrid contribution -0.910 0.156 -1.356 1.641 sum -4.452 -0.926 -3.829 5.945 Atomic orbital electron populations 1.22653 0.82157 1.02063 0.99453 1.88007 1.18513 1.28700 1.95261 1.20529 0.87325 0.84017 0.99633 1.20809 0.94080 1.11892 0.83084 1.67361 1.11195 1.11308 1.29723 1.22779 0.88057 1.07588 0.97020 1.18563 0.95545 0.96211 0.89936 1.20581 0.90997 1.32596 1.04967 0.89094 1.27359 1.06317 0.93906 0.91478 1.70505 1.20507 1.13757 1.34866 0.83523 0.72356 0.77019 0.77696 1.19478 1.19565 1.19706 1.20092 0.87336 1.02561 0.85708 1.86102 1.34145 1.88862 1.11668 1.22584 0.95490 1.01272 0.85694 1.67022 1.09107 1.17526 1.32059 0.94556 0.90235 0.94428 0.92407 0.92801 0.83025 0.88565 0.90000 0.93490 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 15 2 O -0.39 -7.74 10.69 -35.23 -0.38 -8.12 15 3 C 0.16 3.30 6.35 36.00 0.23 3.53 15 4 C 0.16 4.04 7.27 -156.92 -1.14 2.90 15 5 N -0.48 -12.53 10.29 -10.14 -0.10 -12.63 15 6 C 0.01 0.35 9.24 -16.46 -0.15 0.20 15 7 C 0.01 0.14 5.33 -106.38 -0.57 -0.42 15 8 C -0.46 -11.91 8.73 -37.82 -0.33 -12.24 15 9 H 0.09 2.30 7.79 -52.49 -0.41 1.89 15 10 C 0.03 0.79 4.99 -17.32 -0.09 0.70 15 11 N -0.77 -19.47 12.35 55.55 0.69 -18.78 15 12 Si 1.07 20.20 30.00 -169.99 -5.10 15.10 15 13 H -0.27 -5.04 7.11 56.52 0.40 -4.64 15 14 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 15 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 16 C 0.24 6.18 7.57 -15.85 -0.12 6.06 15 17 O -0.30 -7.16 9.91 -17.53 -0.17 -7.34 15 18 C 0.05 0.84 10.41 101.05 1.05 1.89 15 19 N -0.53 -13.39 9.26 -10.18 -0.09 -13.49 15 20 H 0.04 0.44 8.14 -51.93 -0.42 0.02 15 21 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.04 0.46 8.14 -51.93 -0.42 0.04 15 23 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.15 3.95 6.58 -52.48 -0.35 3.61 15 26 H 0.30 7.86 6.65 -40.82 -0.27 7.59 15 27 H 0.08 1.19 8.14 -51.92 -0.42 0.77 15 28 H 0.05 0.86 8.12 -51.93 -0.42 0.43 15 29 H 0.05 0.84 8.12 -51.93 -0.42 0.42 15 LS Contribution 260.83 15.07 3.93 3.93 Total: -1.00 -29.79 260.83 -4.44 -34.23 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -3.20 Total: 2.91 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 0.00 Total: 4.20 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 0.49 Total: -44.90 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.55 Total: -15.46 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.10 Total: 15.10 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.79 -4.44 -34.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865097.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.987 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds