Wall clock time and date at job start Mon Mar 30 2020 03:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42906 * 113.99604 * 2 1 4 4 C 1.50695 * 109.46777 * 180.02562 * 3 2 1 5 5 N 1.32042 * 118.77082 * 270.01846 * 4 3 2 6 6 C 1.32019 * 121.25213 * 179.68014 * 5 4 3 7 7 C 1.40914 * 118.83271 * 0.57162 * 6 5 4 8 8 C 1.41182 * 121.08414 * 179.72178 * 7 6 5 9 9 H 1.07995 * 120.00212 * 154.76706 * 8 7 6 10 10 C 1.39961 * 119.99510 * 334.76666 * 8 7 6 11 11 N 1.30859 * 119.99933 * 334.92440 * 10 8 7 12 12 Si 1.86797 * 119.99844 * 154.93041 * 10 8 7 13 13 H 1.48494 * 109.47057 * 179.97438 * 12 10 8 14 14 H 1.48500 * 109.46845 * 299.99787 * 12 10 8 15 15 H 1.48494 * 109.47240 * 59.99581 * 12 10 8 16 16 C 1.41863 * 117.83226 * 359.44669 * 7 6 5 17 17 O 1.35279 * 120.68576 * 180.25133 * 16 7 6 18 18 C 1.42894 * 117.00188 * 180.02562 * 17 16 7 19 19 N 1.31869 * 118.77302 * 89.99829 * 4 3 2 20 20 H 1.08994 * 109.47153 * 60.00335 * 1 2 3 21 21 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47092 * 299.99886 * 1 2 3 23 23 H 1.08994 * 109.47393 * 59.99627 * 3 2 1 24 24 H 1.09002 * 109.46652 * 299.99858 * 3 2 1 25 25 H 1.08004 * 120.58054 * 180.29446 * 6 5 4 26 26 H 0.96996 * 119.99784 * 354.23099 * 11 10 8 27 27 H 1.09008 * 109.46992 * 180.02562 * 18 17 16 28 28 H 1.08998 * 109.46900 * 299.99880 * 18 17 16 29 29 H 1.08994 * 109.47227 * 60.00244 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.1465 1.1358 1.1565 6 6 5.4608 1.0254 1.2131 7 6 6.1909 0.9736 0.0090 8 6 7.5983 0.8617 0.0141 9 1 8.1084 0.4256 -0.8320 10 6 8.3323 1.3159 1.1158 11 7 7.8400 2.2487 1.8904 12 14 10.0148 0.5909 1.4802 13 1 10.5807 1.2376 2.6913 14 1 9.8842 -0.8698 1.7137 15 1 10.9171 0.8287 0.3251 16 6 5.4652 1.0317 -1.2086 17 8 6.1075 0.9814 -2.3982 18 6 5.2995 1.0465 -3.5749 19 7 4.1448 1.1366 -1.1568 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8465 0.8899 24 1 1.6885 1.8464 -0.8900 25 1 5.9679 0.9800 2.1656 26 1 7.0058 2.6842 1.6552 27 1 5.9378 0.9959 -4.4572 28 1 4.6017 0.2093 -3.5833 29 1 4.7429 1.9836 -3.5821 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865097.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:00 Heat of formation + Delta-G solvation = -74.392512 kcal Electronic energy + Delta-G solvation = -15176.344646 eV Core-core repulsion = 12484.913489 eV Total energy + Delta-G solvation = -2691.431157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55397 -39.21113 -38.47883 -36.59930 -33.56546 -32.57507 -29.76873 -28.24282 -27.27562 -25.90699 -24.22670 -23.19119 -20.15440 -19.16190 -18.53864 -17.48319 -16.74576 -16.46513 -16.30727 -16.25081 -15.54619 -15.35556 -14.78012 -14.49959 -14.10749 -13.43291 -13.21098 -12.95784 -12.80670 -12.48228 -12.38782 -12.18915 -11.92361 -11.38576 -11.09829 -10.81942 -10.65549 -10.13610 -9.87387 -9.40057 -6.63992 0.34908 0.59931 1.53527 1.62178 1.84868 2.27712 2.34229 2.45858 2.86228 3.37782 3.60441 3.73275 4.24357 4.30710 4.41198 4.45509 4.50920 4.55776 4.60408 4.66256 4.68274 4.81692 4.93175 5.34589 5.63375 5.68851 5.95521 6.24183 6.38655 6.49323 6.74739 7.61083 7.77617 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.032729 B = 0.008287 C = 0.006971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.294261 B = 3378.128522 C = 4015.749336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.419 6.419 3 C 0.168 3.832 4 C 0.152 3.848 5 N -0.494 5.494 6 C -0.001 4.001 7 C -0.022 4.022 8 C -0.482 4.482 9 H 0.090 0.910 10 C 0.005 3.995 11 N -0.786 5.786 12 Si 1.124 2.876 13 H -0.266 1.266 14 H -0.260 1.260 15 H -0.253 1.253 16 C 0.226 3.774 17 O -0.316 6.316 18 C 0.041 3.959 19 N -0.530 5.530 20 H 0.055 0.945 21 H 0.097 0.903 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.147 0.853 26 H 0.285 0.715 27 H 0.124 0.876 28 H 0.046 0.954 29 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -1.450 -4.235 6.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C 0.090 3.910 4 C -0.110 4.110 5 N -0.210 5.210 6 C -0.168 4.168 7 C -0.030 4.030 8 C -0.510 4.510 9 H 0.108 0.892 10 C -0.214 4.214 11 N -0.408 5.408 12 Si 0.939 3.061 13 H -0.190 1.190 14 H -0.184 1.184 15 H -0.177 1.177 16 C 0.032 3.968 17 O -0.222 6.222 18 C -0.054 4.054 19 N -0.260 5.260 20 H 0.073 0.927 21 H 0.116 0.884 22 H 0.072 0.928 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.164 0.836 26 H 0.097 0.903 27 H 0.142 0.858 28 H 0.064 0.936 29 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.689 -1.447 -3.205 5.097 hybrid contribution -1.027 0.271 -1.237 1.630 sum -4.717 -1.177 -4.442 6.585 Atomic orbital electron populations 1.22957 0.78901 1.03891 1.01158 1.87929 1.22002 1.28302 1.95588 1.20539 0.84465 0.84750 1.01202 1.21846 0.96385 1.10080 0.82664 1.67415 1.11023 1.12067 1.30518 1.22730 0.88507 1.08601 0.96949 1.18867 0.96462 0.97100 0.90556 1.20769 0.90894 1.33411 1.05959 0.89193 1.28831 1.09174 0.93003 0.90407 1.70616 1.20066 1.14779 1.35309 0.82924 0.68195 0.76729 0.78283 1.19035 1.18432 1.17723 1.20364 0.87736 1.02105 0.86579 1.86069 1.35387 1.88543 1.12205 1.22925 0.96245 1.01289 0.84928 1.67161 1.08776 1.17889 1.32177 0.92677 0.88439 0.92814 0.91013 0.90942 0.83593 0.90268 0.85772 0.93559 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 15 2 O -0.42 -16.11 10.69 -148.98 -1.59 -17.70 15 3 C 0.17 6.59 6.35 71.23 0.45 7.05 15 4 C 0.15 7.56 7.27 138.65 1.01 8.56 15 5 N -0.49 -26.15 10.29 -185.99 -1.91 -28.06 15 6 C 0.00 -0.08 9.24 85.32 0.79 0.71 15 7 C -0.02 -1.21 5.33 -21.00 -0.11 -1.32 15 8 C -0.48 -25.15 8.73 23.41 0.20 -24.94 15 9 H 0.09 4.59 7.79 -2.91 -0.02 4.57 15 10 C 0.00 0.22 4.99 85.26 0.43 0.65 15 11 N -0.79 -40.13 12.35 21.83 0.27 -39.86 15 12 Si 1.12 39.68 30.00 68.60 2.06 41.74 15 13 H -0.27 -9.17 7.11 99.48 0.71 -8.46 15 14 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 15 H -0.25 -8.16 7.11 99.48 0.71 -7.45 15 16 C 0.23 11.90 7.57 85.48 0.65 12.55 15 17 O -0.32 -14.89 9.91 -85.64 -0.85 -15.74 15 18 C 0.04 1.44 10.41 113.37 1.18 2.62 15 19 N -0.53 -26.84 9.26 -299.04 -2.77 -29.61 15 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.10 2.08 8.14 -2.39 -0.02 2.06 15 22 H 0.05 1.17 8.14 -2.38 -0.02 1.15 15 23 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 24 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 25 H 0.15 7.91 6.58 -2.91 -0.02 7.89 15 26 H 0.28 15.40 6.65 -92.71 -0.62 14.78 15 27 H 0.12 3.26 8.14 -2.38 -0.02 3.24 15 28 H 0.05 1.62 8.12 -2.39 -0.02 1.60 15 29 H 0.05 1.67 8.12 -2.39 -0.02 1.65 15 Total: -1.00 -64.57 260.83 2.35 -62.21 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.31 Total: 19.23 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 5.84 Total: 7.79 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.41 Total: -97.53 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -2.44 Total: -33.44 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.06 Total: 41.74 kcal Total: -64.57 2.35 -62.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865097.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.181 kcal (2) G-P(sol) polarization free energy of solvation -64.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds