Wall clock time and date at job start Mon Mar 30 2020 02:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47119 * 2 1 4 4 F 1.39899 * 109.47035 * 120.00234 * 2 1 3 5 5 C 1.53004 * 109.47138 * 239.99861 * 2 1 3 6 6 H 1.08997 * 109.46977 * 54.39837 * 5 2 1 7 7 C 1.50704 * 109.46853 * 294.40071 * 5 2 1 8 8 H 1.07995 * 120.00131 * 334.90133 * 7 5 2 9 9 C 1.37879 * 119.99692 * 154.90284 * 7 5 2 10 10 N 1.31513 * 120.00113 * 5.06391 * 9 7 5 11 11 Si 1.86799 * 119.99961 * 185.05919 * 9 7 5 12 12 H 1.48503 * 109.47149 * 270.00023 * 11 9 7 13 13 H 1.48495 * 109.47416 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.47160 * 150.00471 * 11 9 7 15 15 C 1.50696 * 109.47003 * 174.40510 * 5 2 1 16 16 C 1.38265 * 119.95019 * 59.72436 * 15 5 2 17 17 C 1.38140 * 120.05856 * 179.72855 * 16 15 5 18 18 C 1.38736 * 119.94159 * 0.52055 * 17 16 15 19 19 O 1.35900 * 120.05463 * 179.72885 * 18 17 16 20 20 C 1.38725 * 119.89094 * 359.75489 * 18 17 16 21 21 C 1.38145 * 119.94544 * 359.97438 * 20 18 17 22 22 H 1.08998 * 109.47041 * 185.02563 * 1 2 3 23 23 H 1.09002 * 109.47452 * 305.02636 * 1 2 3 24 24 H 1.08999 * 109.47262 * 65.02976 * 1 2 3 25 25 H 0.97004 * 119.99752 * 354.98243 * 10 9 7 26 26 H 1.07999 * 119.96420 * 359.97438 * 16 15 5 27 27 H 1.07996 * 120.03235 * 180.29767 * 17 16 15 28 28 H 0.96701 * 113.99922 * 270.02498 * 19 18 17 29 29 H 1.08002 * 120.02948 * 179.97438 * 20 18 17 30 30 H 1.07992 * 119.97883 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0400 -0.7213 -1.2493 6 1 1.5971 -0.2687 -2.1364 7 6 1.6540 -2.1765 -1.1818 8 1 1.4802 -2.6453 -0.2245 9 6 1.5228 -2.9094 -2.3423 10 7 1.8306 -2.3677 -3.5005 11 14 0.9081 -4.6718 -2.2694 12 1 2.0626 -5.5926 -2.1125 13 1 -0.0106 -4.8283 -1.1133 14 1 0.1838 -4.9957 -3.5247 15 6 3.5406 -0.6024 -1.3204 16 6 4.3221 -1.1041 -0.2961 17 6 5.6982 -1.0013 -0.3617 18 6 6.2953 -0.3846 -1.4515 19 8 7.6486 -0.2773 -1.5158 20 6 5.5088 0.1230 -2.4753 21 6 4.1334 0.0128 -2.4077 22 1 -0.3633 -1.0237 0.0900 23 1 -0.3634 0.5898 0.8415 24 1 -0.3634 0.4338 -0.9316 25 1 2.0799 -1.4314 -3.5470 26 1 3.8565 -1.5802 0.5541 27 1 6.3084 -1.3976 0.4364 28 1 7.9984 0.5311 -1.1169 29 1 5.9713 0.6040 -3.3246 30 1 3.5206 0.4074 -3.2045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260056709.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:20 Heat of formation + Delta-G solvation = -87.391737 kcal Electronic energy + Delta-G solvation = -15471.091778 eV Core-core repulsion = 12759.176971 eV Total energy + Delta-G solvation = -2711.914807 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.72901 -39.05511 -36.61577 -34.14701 -31.56898 -30.25542 -29.39907 -26.00110 -23.72945 -22.08904 -21.36799 -20.03168 -17.86416 -17.02710 -15.56154 -15.39249 -14.95896 -14.80820 -14.03684 -13.81552 -13.60162 -12.86344 -12.74463 -12.31061 -11.93880 -11.87126 -11.49321 -11.32727 -11.09890 -10.87610 -10.49456 -10.18162 -10.01200 -9.92937 -9.45652 -8.78714 -8.47396 -8.25484 -7.55160 -6.44325 -4.16022 2.00648 2.10141 3.42013 3.43701 3.59299 4.36669 4.48472 4.75038 5.24081 5.50314 5.56089 5.57971 5.61900 5.81108 5.86240 6.08615 6.24069 6.29519 6.45836 6.51773 6.57569 6.76355 6.84492 7.06490 7.08430 7.23898 7.55463 7.59470 8.01940 8.14078 8.37172 8.76542 9.53581 10.94462 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.023157 B = 0.011128 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.841466 B = 2515.535425 C = 3127.561264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 H 0.053 0.947 4 F -0.218 7.218 5 C 0.035 3.965 6 H 0.054 0.946 7 C -0.582 4.582 8 H 0.060 0.940 9 C 0.024 3.976 10 N -0.903 5.903 11 Si 1.068 2.932 12 H -0.287 1.287 13 H -0.287 1.287 14 H -0.284 1.284 15 C -0.043 4.043 16 C -0.090 4.090 17 C -0.151 4.151 18 C 0.066 3.934 19 O -0.504 6.504 20 C -0.147 4.147 21 C -0.113 4.113 22 H 0.076 0.924 23 H 0.044 0.956 24 H 0.063 0.937 25 H 0.271 0.729 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.376 0.624 29 H 0.115 0.885 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.753 6.236 4.759 8.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.069 3.931 3 H 0.071 0.929 4 F -0.199 7.199 5 C 0.016 3.984 6 H 0.072 0.928 7 C -0.619 4.619 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.538 5.538 11 Si 0.896 3.104 12 H -0.214 1.214 13 H -0.213 1.213 14 H -0.210 1.210 15 C -0.044 4.044 16 C -0.108 4.108 17 C -0.170 4.170 18 C 0.022 3.978 19 O -0.312 6.312 20 C -0.166 4.166 21 C -0.131 4.131 22 H 0.095 0.905 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.230 0.770 29 H 0.133 0.867 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.412 4.328 3.556 6.099 hybrid contribution 0.581 1.672 1.067 2.067 sum 2.993 6.000 4.623 8.145 Atomic orbital electron populations 1.22192 0.95151 1.03648 1.01053 1.21522 0.94254 0.93784 0.83537 0.92869 1.92679 1.90201 1.83685 1.53323 1.18668 0.87654 0.98398 0.93678 0.92844 1.21745 1.50478 0.94097 0.95618 0.92194 1.25816 0.94206 1.05763 0.92334 1.70770 1.41533 1.14912 1.26567 0.83548 0.76657 0.74612 0.75569 1.21415 1.21270 1.20995 1.20746 0.98670 0.92338 0.92600 1.21083 0.91973 0.98217 0.99566 1.21316 0.95447 1.02379 0.97831 1.18328 0.81953 1.02191 0.95332 1.84845 1.18331 1.45496 1.82557 1.21209 0.94094 1.02337 0.98921 1.20933 0.93610 1.00147 0.98455 0.90456 0.93657 0.91761 0.91737 0.85179 0.86685 0.77047 0.86722 0.86616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.39 37.16 0.35 -2.58 16 2 C 0.11 2.12 3.55 -26.73 -0.09 2.03 16 3 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 4 F -0.22 -4.67 14.07 2.25 0.03 -4.64 16 5 C 0.03 0.81 1.52 -92.92 -0.14 0.67 16 6 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 7 C -0.58 -15.25 6.84 -34.44 -0.24 -15.48 16 8 H 0.06 1.61 7.40 -52.49 -0.39 1.23 16 9 C 0.02 0.67 5.45 -17.82 -0.10 0.57 16 10 N -0.90 -26.00 13.63 55.43 0.76 -25.24 16 11 Si 1.07 24.76 29.91 -169.99 -5.08 19.68 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C -0.04 -0.96 4.67 -104.60 -0.49 -1.45 16 16 C -0.09 -1.96 8.60 -39.61 -0.34 -2.30 16 17 C -0.15 -2.95 9.99 -39.43 -0.39 -3.35 16 18 C 0.07 1.24 6.70 -39.22 -0.26 0.98 16 19 O -0.50 -8.20 13.50 -19.43 -0.26 -8.46 16 20 C -0.15 -2.83 9.99 -39.44 -0.39 -3.22 16 21 C -0.11 -2.37 9.12 -39.60 -0.36 -2.74 16 22 H 0.08 1.52 7.56 -51.93 -0.39 1.12 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.27 7.61 6.02 -40.82 -0.25 7.37 16 26 H 0.13 2.87 6.43 -52.49 -0.34 2.53 16 27 H 0.12 1.97 8.06 -52.49 -0.42 1.55 16 28 H 0.38 4.02 9.06 45.56 0.41 4.44 16 29 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 30 H 0.12 2.32 7.84 -52.49 -0.41 1.91 16 LS Contribution 259.74 15.07 3.91 3.91 Total: -1.00 -30.12 259.74 -5.72 -35.84 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.62 Total: 5.78 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -2.46 Total: -26.87 kcal Atomic # 7 Polarization: -26.00 SS G_CDS: 0.76 Total: -25.24 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.26 Total: -8.46 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.03 Total: -4.64 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.12 -5.72 -35.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056709.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.552 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds