Wall clock time and date at job start Mon Mar 30 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47353 * 2 1 4 4 F 1.39904 * 109.47377 * 120.00472 * 2 1 3 5 5 C 1.53007 * 109.46582 * 240.00031 * 2 1 3 6 6 H 1.08989 * 109.47231 * 60.00246 * 5 2 1 7 7 C 1.50697 * 109.46850 * 180.02562 * 5 2 1 8 8 H 1.08004 * 120.00418 * 120.00185 * 7 5 2 9 9 C 1.37881 * 120.00009 * 299.99559 * 7 5 2 10 10 N 1.31514 * 120.00121 * 179.97438 * 9 7 5 11 11 Si 1.86798 * 119.99967 * 0.02562 * 9 7 5 12 12 H 1.48504 * 109.47362 * 89.99377 * 11 9 7 13 13 H 1.48501 * 109.47373 * 209.99705 * 11 9 7 14 14 H 1.48503 * 109.46778 * 329.99385 * 11 9 7 15 15 C 1.50706 * 109.47020 * 299.99957 * 5 2 1 16 16 C 1.38264 * 119.94244 * 120.00381 * 15 5 2 17 17 C 1.38145 * 120.05437 * 179.97438 * 16 15 5 18 18 C 1.38734 * 119.94237 * 0.25588 * 17 16 15 19 19 O 1.35904 * 120.05067 * 179.74240 * 18 17 16 20 20 C 1.38735 * 119.88958 * 359.47324 * 18 17 16 21 21 C 1.38137 * 119.94094 * 0.54351 * 20 18 17 22 22 H 1.09002 * 109.47222 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.46925 * 300.00129 * 1 2 3 24 24 H 1.08996 * 109.47792 * 59.99873 * 1 2 3 25 25 H 0.97005 * 120.00056 * 180.02562 * 10 9 7 26 26 H 1.07999 * 119.97244 * 359.95432 * 16 15 5 27 27 H 1.08002 * 120.02435 * 179.97438 * 17 16 15 28 28 H 0.96695 * 113.99480 * 90.00320 * 19 18 17 29 29 H 1.07992 * 120.02678 * 180.25528 * 20 18 17 30 30 H 1.08007 * 119.97477 * 179.72701 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6596 1.1422 5 6 2.0399 -0.7213 -1.2493 6 1 1.6766 -0.2075 -2.1392 7 6 3.5468 -0.7219 -1.2491 8 1 4.0866 -1.6574 -1.2492 9 6 4.2367 0.4719 -1.2489 10 7 5.5518 0.4714 -1.2481 11 14 3.3033 2.0900 -1.2482 12 1 3.0561 2.5183 0.1521 13 1 4.1061 3.1249 -1.9480 14 1 2.0056 1.9131 -1.9482 15 6 1.5374 -2.1421 -1.2493 16 6 0.7426 -2.5931 -2.2868 17 6 0.2812 -3.8952 -2.2894 18 6 0.6117 -4.7490 -1.2470 19 8 0.1547 -6.0289 -1.2447 20 6 1.4141 -4.2957 -0.2100 21 6 1.8726 -2.9927 -0.2119 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 6.0372 1.3113 -1.2476 26 1 0.4819 -1.9267 -3.0958 27 1 -0.3400 -4.2469 -3.0999 28 1 0.7435 -6.6575 -1.6841 29 1 1.6761 -4.9597 0.6004 30 1 2.4936 -2.6379 0.5974 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260056719.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:26 Heat of formation + Delta-G solvation = -92.383711 kcal Electronic energy + Delta-G solvation = -15529.381526 eV Core-core repulsion = 12817.250251 eV Total energy + Delta-G solvation = -2712.131275 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.40983 -40.58819 -38.10009 -35.76434 -33.86689 -31.80155 -30.91597 -28.88776 -24.93268 -23.65134 -23.43005 -21.37138 -19.22971 -18.93392 -17.89648 -16.74476 -16.51025 -16.28654 -16.00532 -15.66242 -15.15335 -14.89776 -14.24524 -14.16942 -13.61170 -13.47610 -13.29746 -12.91575 -12.85889 -12.73456 -12.22685 -11.98943 -11.85803 -11.26910 -11.26070 -11.08102 -10.65161 -9.80087 -9.22156 -8.32637 -6.37536 0.43808 0.54145 1.26174 1.30633 1.40301 2.26795 2.81021 3.01542 3.42393 3.78899 3.92313 4.05347 4.15411 4.20658 4.22332 4.42601 4.65251 4.69786 4.82866 4.96522 5.07009 5.16435 5.21796 5.35897 5.50325 5.52342 5.56910 5.95850 6.02350 6.28843 6.67400 6.93354 7.25040 8.84132 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.009390 C = 0.008842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.713927 B = 2981.168861 C = 3165.962184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.054 0.946 4 F -0.222 7.222 5 C 0.023 3.977 6 H 0.064 0.936 7 C -0.507 4.507 8 H 0.033 0.967 9 C 0.013 3.987 10 N -0.945 5.945 11 Si 0.929 3.071 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.226 1.226 15 C -0.064 4.064 16 C -0.111 4.111 17 C -0.144 4.144 18 C 0.087 3.913 19 O -0.506 6.506 20 C -0.156 4.156 21 C -0.105 4.105 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.267 0.733 26 H 0.141 0.859 27 H 0.151 0.849 28 H 0.406 0.594 29 H 0.133 0.867 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 -4.937 -1.442 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.040 3.960 3 H 0.071 0.929 4 F -0.203 7.203 5 C 0.004 3.996 6 H 0.081 0.919 7 C -0.545 4.545 8 H 0.051 0.949 9 C -0.185 4.185 10 N -0.584 5.584 11 Si 0.754 3.246 12 H -0.196 1.196 13 H -0.216 1.216 14 H -0.149 1.149 15 C -0.064 4.064 16 C -0.129 4.129 17 C -0.162 4.162 18 C 0.042 3.958 19 O -0.319 6.319 20 C -0.174 4.174 21 C -0.123 4.123 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.159 0.841 27 H 0.168 0.832 28 H 0.264 0.736 29 H 0.151 0.849 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.929 -4.628 -1.123 13.779 hybrid contribution 1.089 0.528 0.099 1.214 sum -11.841 -4.100 -1.024 12.572 Atomic orbital electron populations 1.22386 0.92506 1.03805 1.04200 1.22128 0.95426 0.94752 0.83649 0.92854 1.92664 1.90915 1.83305 1.53416 1.18846 0.94760 0.91427 0.94598 0.91854 1.21049 0.90058 0.93096 1.50273 0.94909 1.25897 0.95541 1.02922 0.94117 1.70029 1.08219 1.28130 1.52045 0.86133 0.80469 0.79094 0.78926 1.19556 1.21641 1.14851 1.19914 0.95888 0.95903 0.94735 1.21166 0.97410 0.96215 0.98131 1.21528 1.02008 0.93874 0.98838 1.18435 0.96777 0.85899 0.94639 1.84746 1.50074 1.15643 1.81406 1.21526 0.99210 0.96366 1.00343 1.21147 0.98971 0.93328 0.98884 0.91380 0.90733 0.89133 0.92410 0.84135 0.83173 0.73578 0.84914 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 9.40 71.98 0.68 -4.70 16 2 C 0.08 3.18 3.14 30.60 0.10 3.28 16 3 H 0.05 2.29 3.27 -2.39 -0.01 2.29 16 4 F -0.22 -10.24 14.19 44.97 0.64 -9.60 16 5 C 0.02 1.01 1.53 -12.28 -0.02 0.99 16 6 H 0.06 2.65 6.93 -2.39 -0.02 2.64 16 7 C -0.51 -28.46 8.55 25.60 0.22 -28.24 16 8 H 0.03 2.09 7.84 -2.91 -0.02 2.06 16 9 C 0.01 0.73 5.45 84.66 0.46 1.19 16 10 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 11 Si 0.93 42.17 24.37 68.60 1.67 43.84 16 12 H -0.27 -11.93 6.87 99.48 0.68 -11.25 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.23 -8.83 6.53 99.48 0.65 -8.18 16 15 C -0.06 -2.58 3.47 -19.85 -0.07 -2.65 16 16 C -0.11 -3.66 9.66 22.25 0.22 -3.44 16 17 C -0.14 -4.15 9.99 22.37 0.22 -3.93 16 18 C 0.09 2.61 6.71 22.51 0.15 2.76 16 19 O -0.51 -12.44 13.50 -92.47 -1.25 -13.69 16 20 C -0.16 -5.30 9.99 22.36 0.22 -5.08 16 21 C -0.11 -4.26 8.35 22.25 0.19 -4.07 16 22 H 0.07 2.12 7.22 -2.39 -0.02 2.11 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.03 16 24 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 26 H 0.14 3.97 7.94 -2.91 -0.02 3.94 16 27 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 28 H 0.41 5.94 9.06 -74.06 -0.67 5.27 16 29 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 30 H 0.11 5.02 6.37 -2.91 -0.02 5.01 16 Total: -1.00 -67.91 252.12 4.13 -63.78 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.41 Total: 17.95 kcal Atomic # 6 Polarization: -46.25 SS G_CDS: 2.36 Total: -43.88 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.30 Total: -58.40 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.25 Total: -13.69 kcal Atomic # 9 Polarization: -10.24 SS G_CDS: 0.64 Total: -9.60 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.67 Total: 43.84 kcal Total: -67.91 4.13 -63.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260056719.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.602 kcal (2) G-P(sol) polarization free energy of solvation -67.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds