Wall clock time and date at job start Mon Mar 30 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 F 1.39900 * 109.47010 * 119.99626 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 6 6 H 1.09001 * 109.47066 * 60.00169 * 5 2 1 7 7 C 1.50698 * 109.47592 * 179.97438 * 5 2 1 8 8 H 1.07998 * 120.00218 * 119.99906 * 7 5 2 9 9 C 1.37875 * 120.00046 * 300.00559 * 7 5 2 10 10 N 1.31511 * 120.00192 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99979 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47548 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47233 * 119.99722 * 11 9 7 14 14 H 1.48498 * 109.47163 * 239.99651 * 11 9 7 15 15 C 1.50696 * 109.47490 * 300.00187 * 5 2 1 16 16 C 1.38172 * 120.02775 * 300.00062 * 15 5 2 17 17 C 1.38244 * 120.05658 * 179.97438 * 16 15 5 18 18 C 1.38277 * 120.11097 * 0.02562 * 17 16 15 19 19 C 1.38123 * 120.06118 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.03104 * 119.71830 * 15 5 2 21 21 O 1.35902 * 120.05407 * 0.02562 * 20 15 5 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96996 * 120.00505 * 179.97438 * 10 9 7 26 26 H 1.08000 * 119.97026 * 359.97206 * 16 15 5 27 27 H 1.08002 * 119.94082 * 179.97438 * 17 16 15 28 28 H 1.08008 * 119.97079 * 179.97438 * 18 17 16 29 29 H 1.08001 * 120.03516 * 179.97438 * 19 18 17 30 30 H 0.96701 * 114.00164 * 90.00041 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0400 -0.7212 -1.2491 6 1 1.6768 -0.2074 -2.1391 7 6 3.5470 -0.7207 -1.2495 8 1 4.0874 -1.6558 -1.2494 9 6 4.2360 0.4736 -1.2497 10 7 3.5781 1.6123 -1.2502 11 14 6.1040 0.4742 -1.2494 12 1 6.5995 -0.9256 -1.2483 13 1 6.5990 1.1740 -2.4621 14 1 6.5985 1.1749 -0.0371 15 6 1.5378 -2.1420 -1.2492 16 6 1.8711 -2.9933 -0.2132 17 6 1.4103 -4.2967 -0.2124 18 6 0.6152 -4.7520 -1.2481 19 6 0.2800 -3.9054 -2.2867 20 6 0.7356 -2.5947 -2.2863 21 8 0.4020 -1.7578 -3.3038 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 4.0627 2.4525 -1.2500 26 1 2.4923 -2.6402 0.5966 27 1 1.6723 -4.9606 0.5981 28 1 0.2567 -5.7708 -1.2454 29 1 -0.3407 -4.2615 -3.0956 30 1 1.0247 -1.7702 -4.0435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260173094.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:37 Heat of formation + Delta-G solvation = -98.673996 kcal Electronic energy + Delta-G solvation = -15758.207894 eV Core-core repulsion = 13045.803852 eV Total energy + Delta-G solvation = -2712.404042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.14139 -40.61492 -37.36914 -36.22477 -33.61269 -31.42504 -30.46441 -28.74504 -25.39610 -23.47835 -23.05681 -21.14610 -19.09101 -18.51717 -17.39805 -16.78357 -16.44412 -16.20344 -15.82339 -15.51417 -15.42139 -14.54706 -14.09333 -13.88741 -13.36845 -13.17562 -12.98561 -12.84938 -12.77824 -12.61819 -12.49287 -11.92730 -11.77906 -11.50636 -11.11985 -10.71395 -10.51381 -9.56486 -9.25045 -8.16305 -6.28843 0.50104 0.63146 1.38098 1.41216 1.51861 2.39925 2.91107 3.11887 3.56386 4.05494 4.19093 4.24240 4.31293 4.39618 4.43221 4.65199 4.74649 4.87942 5.03856 5.13042 5.18386 5.22585 5.48206 5.56679 5.59934 5.72417 5.84546 6.02933 6.12052 6.28021 6.76027 6.97294 7.38685 8.88155 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.027953 B = 0.010686 C = 0.010155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.437800 B = 2619.514765 C = 2756.566761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.088 3.912 3 H 0.084 0.916 4 F -0.233 7.233 5 C 0.061 3.939 6 H 0.035 0.965 7 C -0.518 4.518 8 H 0.050 0.950 9 C 0.017 3.983 10 N -0.917 5.917 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.276 1.276 14 H -0.282 1.282 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.136 4.136 18 C -0.117 4.117 19 C -0.151 4.151 20 C 0.079 3.921 21 O -0.507 6.507 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.265 0.735 26 H 0.113 0.887 27 H 0.142 0.858 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -8.718 -0.964 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.101 0.899 4 F -0.214 7.214 5 C 0.042 3.958 6 H 0.053 0.947 7 C -0.556 4.556 8 H 0.068 0.932 9 C -0.182 4.182 10 N -0.556 5.556 11 Si 0.781 3.219 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.208 1.208 15 C -0.090 4.090 16 C -0.133 4.133 17 C -0.154 4.154 18 C -0.135 4.135 19 C -0.169 4.169 20 C 0.034 3.966 21 O -0.319 6.319 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.160 0.840 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -5.459 -8.405 -0.593 10.040 hybrid contribution 1.523 0.478 -0.240 1.614 sum -3.936 -7.927 -0.834 8.890 Atomic orbital electron populations 1.22261 0.95141 1.01966 1.02425 1.21711 0.92790 0.97778 0.82599 0.89850 1.92580 1.90908 1.83801 1.54130 1.18139 0.94870 0.88693 0.94084 0.94737 1.21317 0.91286 0.92370 1.50608 0.93218 1.25679 1.02781 0.95204 0.94505 1.69912 1.36801 0.97745 1.51168 0.85545 0.80514 0.78187 0.77704 1.19426 1.20168 1.20759 1.20599 0.95435 0.97576 0.95364 1.21247 0.99777 0.94090 0.98136 1.21440 0.98846 0.95143 0.99932 1.21261 0.98286 1.00571 0.93385 1.21570 1.02307 0.91885 1.01144 1.18595 0.97806 0.89908 0.90247 1.84707 1.52707 1.64206 1.30235 0.92873 0.91441 0.91658 0.92576 0.86931 0.83986 0.82583 0.83674 0.74509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.59 9.40 71.98 0.68 -5.91 16 2 C 0.09 4.33 3.43 30.59 0.10 4.43 16 3 H 0.08 4.56 6.07 -2.39 -0.01 4.54 16 4 F -0.23 -11.73 14.20 44.97 0.64 -11.10 16 5 C 0.06 3.06 1.89 -12.29 -0.02 3.04 16 6 H 0.03 1.87 6.99 -2.39 -0.02 1.85 16 7 C -0.52 -28.40 7.98 25.60 0.20 -28.20 16 8 H 0.05 2.76 7.60 -2.91 -0.02 2.74 16 9 C 0.02 0.94 5.30 84.65 0.45 1.39 16 10 N -0.92 -51.67 11.32 21.45 0.24 -51.43 16 11 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 C -0.09 -3.90 3.49 -19.77 -0.07 -3.97 16 16 C -0.11 -4.68 8.37 22.26 0.19 -4.49 16 17 C -0.14 -4.32 10.04 22.28 0.22 -4.10 16 18 C -0.12 -3.25 10.04 22.25 0.22 -3.02 16 19 C -0.15 -4.61 9.99 22.37 0.22 -4.39 16 20 C 0.08 2.99 6.68 22.51 0.15 3.14 16 21 O -0.51 -18.43 12.27 -92.44 -1.13 -19.56 16 22 H 0.05 2.14 7.22 -2.39 -0.02 2.12 16 23 H 0.07 2.69 8.14 -2.39 -0.02 2.68 16 24 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.11 5.03 6.38 -2.91 -0.02 5.01 16 27 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 28 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.40 11.49 9.06 -74.06 -0.67 10.82 16 Total: -1.00 -62.41 257.36 4.60 -57.81 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.48 Total: 20.74 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 2.35 Total: -42.08 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.24 Total: -51.43 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -1.13 Total: -19.56 kcal Atomic # 9 Polarization: -11.73 SS G_CDS: 0.64 Total: -11.10 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -62.41 4.60 -57.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260173094.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.865 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds