Wall clock time and date at job start Mon Mar 30 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47195 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47151 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46944 * 240.00418 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.50701 * 109.47355 * 180.02562 * 15 13 12 17 17 C 1.41380 * 126.79802 * 125.00111 * 16 15 13 18 18 C 1.35453 * 103.98488 * 180.02562 * 17 16 15 19 19 O 1.34048 * 106.44265 * 359.97438 * 18 17 16 20 20 N 1.20922 * 111.56768 * 359.71503 * 19 18 17 21 21 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 25 25 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 26 26 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 27 27 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 28 28 H 1.08004 * 128.00734 * 0.03336 * 17 16 15 29 29 H 1.07997 * 126.77761 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 6 2.7159 0.2438 4.7371 17 6 2.1010 0.0928 6.0012 18 6 2.4460 1.2192 6.6697 19 8 3.2009 1.9423 5.8306 20 7 3.3441 1.3835 4.7678 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7094 1.1618 -3.4844 25 1 2.2491 -1.6318 1.1526 26 1 1.9894 -1.5476 3.8337 27 1 3.6590 -1.1179 3.3911 28 1 1.4962 -0.7303 6.3525 29 1 2.1678 1.4826 7.6794 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260233192.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:07 Heat of formation + Delta-G solvation = 18.686133 kcal Electronic energy + Delta-G solvation = -14902.739885 eV Core-core repulsion = 12215.344921 eV Total energy + Delta-G solvation = -2687.394964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.77462 -38.85423 -35.00777 -34.20910 -32.38006 -31.59788 -29.88806 -27.98132 -25.24534 -23.03396 -22.14958 -20.59748 -19.36574 -17.70706 -17.49738 -16.90265 -15.63378 -15.36512 -14.89538 -14.52910 -14.01043 -13.32568 -12.91292 -12.71918 -12.39995 -12.24238 -11.61630 -11.10076 -11.07022 -10.93357 -10.70127 -10.29463 -10.23491 -10.02940 -9.49567 -9.03987 -8.98229 -8.54453 -7.89514 -6.11455 -4.20813 1.66556 2.37245 3.24103 3.31630 3.34305 3.39492 3.40867 4.08358 4.30186 4.37937 4.73893 5.20275 5.20733 5.33747 5.35364 5.54293 5.69552 5.81984 6.11376 6.83359 6.97220 7.16379 7.47537 7.57343 7.70323 7.92911 8.16014 8.48569 8.67209 8.79390 9.14481 9.46843 10.94665 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.066603 B = 0.005486 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.302504 B = 5102.851860 C = 5165.106928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.709 5.709 13 C 0.502 3.498 14 O -0.542 6.542 15 C -0.067 4.067 16 C 0.030 3.970 17 C -0.230 4.230 18 C -0.072 4.072 19 O 0.102 5.898 20 N -0.334 5.334 21 H 0.090 0.910 22 H 0.026 0.974 23 H 0.013 0.987 24 H 0.264 0.736 25 H 0.389 0.611 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.169 0.831 29 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.808 -4.935 15.413 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.420 6.420 15 C -0.108 4.108 16 C -0.129 4.129 17 C -0.251 4.251 18 C -0.153 4.153 19 O 0.033 5.967 20 N -0.035 5.035 21 H 0.108 0.892 22 H 0.045 0.955 23 H 0.032 0.968 24 H 0.074 0.926 25 H 0.221 0.779 26 H 0.127 0.873 27 H 0.125 0.875 28 H 0.187 0.813 29 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.262 -3.289 14.371 14.915 hybrid contribution -0.261 -1.571 -0.391 1.640 sum 2.002 -4.860 13.980 14.935 Atomic orbital electron populations 1.22071 0.98492 0.99053 1.00866 1.18745 0.91006 0.94038 0.79983 0.93400 1.21260 1.32367 1.13202 0.90323 0.91995 1.24905 0.94831 0.94968 0.99100 1.69917 1.35949 1.22456 1.23772 0.86383 0.78584 0.79512 0.82550 1.19731 1.20874 1.20873 1.46478 1.65355 1.13458 1.10498 1.20120 0.79256 0.87636 0.84502 1.90700 1.50552 1.15837 1.84862 1.20094 1.04231 0.96257 0.90252 1.22970 0.99045 0.94651 0.96279 1.22678 1.06634 1.01725 0.94111 1.25939 0.98115 0.92492 0.98787 1.84886 1.53134 1.41237 1.17476 1.73918 1.20263 1.08521 1.00788 0.89153 0.95466 0.96750 0.92625 0.77904 0.87281 0.87522 0.81302 0.77050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 15 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 15 3 H 0.05 1.46 7.57 -51.93 -0.39 1.07 15 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 15 5 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 15 7 N -0.88 -25.34 11.32 55.43 0.63 -24.71 15 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 15 9 H -0.27 -6.15 7.11 56.52 0.40 -5.74 15 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 12 N -0.71 -14.98 5.07 -54.93 -0.28 -15.26 15 13 C 0.50 10.35 7.79 -10.98 -0.09 10.27 15 14 O -0.54 -13.80 15.26 5.55 0.08 -13.71 15 15 C -0.07 -0.99 6.30 -29.03 -0.18 -1.17 15 16 C 0.03 0.47 6.10 -82.10 -0.50 -0.03 15 17 C -0.23 -2.66 11.12 -39.38 -0.44 -3.10 15 18 C -0.07 -0.75 12.30 29.74 0.37 -0.38 15 19 O 0.10 1.50 11.20 17.15 0.19 1.70 15 20 N -0.33 -6.00 11.48 33.42 0.38 -5.61 15 21 H 0.09 2.49 6.07 -51.93 -0.32 2.18 15 22 H 0.03 0.63 8.14 -51.92 -0.42 0.21 15 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 25 H 0.39 6.88 8.54 -40.82 -0.35 6.53 15 26 H 0.11 1.20 8.14 -51.93 -0.42 0.77 15 27 H 0.11 1.34 8.14 -51.93 -0.42 0.92 15 28 H 0.17 1.38 8.06 -52.48 -0.42 0.95 15 29 H 0.21 1.08 8.06 -52.49 -0.42 0.66 15 LS Contribution 261.55 15.07 3.94 3.94 Total: -1.00 -34.37 261.55 -4.27 -38.65 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.13 Total: 3.20 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -1.07 Total: -4.03 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.73 Total: -45.58 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.28 Total: -12.02 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -34.37 -4.27 -38.65 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233192.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.334 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds