Wall clock time and date at job start Mon Mar 30 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 5 5 H 1.07995 * 120.00006 * 240.00415 * 4 2 1 6 6 C 1.37875 * 120.00190 * 59.99565 * 4 2 1 7 7 N 1.31520 * 119.99966 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00189 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47195 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47151 * 120.00429 * 8 6 4 11 11 H 1.48503 * 109.46944 * 240.00418 * 8 6 4 12 12 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 13 13 C 1.34777 * 119.99828 * 274.72131 * 12 2 1 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 2 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 2 16 16 C 1.50701 * 109.47355 * 180.02562 * 15 13 12 17 17 C 1.41380 * 126.79802 * 125.00111 * 16 15 13 18 18 C 1.35453 * 103.98488 * 180.02562 * 17 16 15 19 19 O 1.34048 * 106.44265 * 359.97438 * 18 17 16 20 20 N 1.20922 * 111.56768 * 359.71503 * 19 18 17 21 21 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 22 22 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 24 24 H 0.96995 * 120.00431 * 179.97438 * 7 6 4 25 25 H 0.97001 * 120.00384 * 95.00578 * 12 2 1 26 26 H 1.08998 * 109.46954 * 300.00581 * 15 13 12 27 27 H 1.09002 * 109.46946 * 59.99717 * 15 13 12 28 28 H 1.08004 * 128.00734 * 0.03336 * 17 16 15 29 29 H 1.07997 * 126.77761 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 3.1465 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 2.1523 -0.0169 2.3557 14 8 1.8638 1.1599 2.4102 15 6 2.6605 -0.7257 3.5847 16 6 2.7159 0.2438 4.7371 17 6 2.1010 0.0928 6.0012 18 6 2.4460 1.2192 6.6697 19 8 3.2009 1.9423 5.8306 20 7 3.3441 1.3835 4.7678 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7094 1.1618 -3.4844 25 1 2.2491 -1.6318 1.1526 26 1 1.9894 -1.5476 3.8337 27 1 3.6590 -1.1179 3.3911 28 1 1.4962 -0.7303 6.3525 29 1 2.1678 1.4826 7.6794 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260233192.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:07 Heat of formation + Delta-G solvation = -7.220961 kcal Electronic energy + Delta-G solvation = -14903.863301 eV Core-core repulsion = 12215.344921 eV Total energy + Delta-G solvation = -2688.518380 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.82651 -40.55565 -36.83253 -35.45083 -34.34455 -32.58729 -31.54703 -29.54908 -27.36261 -24.08323 -23.67467 -22.08468 -21.06729 -19.06008 -18.59792 -18.40191 -17.37300 -17.18013 -16.33001 -16.02838 -15.52790 -14.72008 -14.42773 -14.15215 -13.85147 -13.82499 -13.29940 -12.98108 -12.84618 -12.72417 -12.30058 -12.13915 -12.12148 -11.12586 -11.11836 -10.70138 -10.58085 -10.46614 -9.76829 -8.19479 -6.37562 0.76792 1.34793 1.43230 1.44284 1.56615 1.80304 2.35087 2.57077 2.70127 3.10990 3.27642 3.74810 4.07775 4.28496 4.45683 4.50789 4.67667 4.75496 4.89001 4.92822 5.07270 5.24802 5.41818 5.59470 5.66895 5.89315 6.07859 6.71190 6.94811 7.30717 7.51620 7.56342 8.87325 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.066603 B = 0.005486 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.302504 B = 5102.851860 C = 5165.106928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.009 1.009 4 C -0.546 4.546 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.277 1.277 11 H -0.285 1.285 12 N -0.704 5.704 13 C 0.495 3.505 14 O -0.597 6.597 15 C -0.054 4.054 16 C 0.002 3.998 17 C -0.232 4.232 18 C -0.056 4.056 19 O 0.086 5.914 20 N -0.393 5.393 21 H 0.065 0.935 22 H 0.045 0.955 23 H 0.009 0.991 24 H 0.265 0.735 25 H 0.408 0.592 26 H 0.155 0.845 27 H 0.129 0.871 28 H 0.207 0.793 29 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -7.359 16.753 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 H 0.009 0.991 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.181 1.181 10 H -0.203 1.203 11 H -0.212 1.212 12 N -0.353 5.353 13 C 0.281 3.719 14 O -0.478 6.478 15 C -0.094 4.094 16 C -0.157 4.157 17 C -0.253 4.253 18 C -0.137 4.137 19 O 0.018 5.982 20 N -0.097 5.097 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.028 0.972 24 H 0.074 0.926 25 H 0.244 0.756 26 H 0.172 0.828 27 H 0.147 0.853 28 H 0.224 0.776 29 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 2.430 -5.761 15.744 16.940 hybrid contribution -0.330 -0.760 -0.702 1.086 sum 2.100 -6.521 15.042 16.528 Atomic orbital electron populations 1.21877 0.98187 0.99625 0.99361 1.18329 0.91231 0.91699 0.82192 0.99129 1.21599 1.32533 1.13580 0.90714 0.90559 1.25867 0.94874 0.95605 1.02536 1.70075 1.37139 1.24040 1.24575 0.85244 0.78106 0.78490 0.78164 1.18110 1.20263 1.21156 1.46210 1.65312 1.14276 1.09534 1.21187 0.77793 0.87153 0.85724 1.90676 1.52731 1.18572 1.85847 1.20127 1.06100 0.96433 0.86714 1.23451 0.99688 0.94467 0.98081 1.23136 1.06596 1.03200 0.92341 1.26977 0.95628 0.91291 0.99810 1.84806 1.54083 1.41811 1.17455 1.73921 1.22782 1.10269 1.02693 0.91643 0.93612 0.97225 0.92561 0.75588 0.82777 0.85303 0.77647 0.71914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.84 9.26 71.98 0.67 -6.17 15 2 C 0.27 14.39 2.56 44.24 0.11 14.51 15 3 H -0.01 -0.59 7.57 -2.39 -0.02 -0.61 15 4 C -0.55 -29.38 8.73 25.60 0.22 -29.16 15 5 H 0.08 3.79 7.74 -2.91 -0.02 3.77 15 6 C 0.01 0.60 5.30 84.65 0.45 1.05 15 7 N -0.92 -54.01 11.32 21.45 0.24 -53.76 15 8 Si 0.98 42.48 29.54 68.60 2.03 44.51 15 9 H -0.26 -10.49 7.11 99.48 0.71 -9.78 15 10 H -0.28 -11.74 7.11 99.48 0.71 -11.04 15 11 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 12 N -0.70 -29.48 5.07 -446.09 -2.26 -31.74 15 13 C 0.49 20.40 7.79 87.66 0.68 21.09 15 14 O -0.60 -31.52 15.26 -3.04 -0.05 -31.57 15 15 C -0.05 -1.46 6.30 29.10 0.18 -1.27 15 16 C 0.00 0.05 6.10 43.58 0.27 0.32 15 17 C -0.23 -4.62 11.12 22.40 0.25 -4.37 15 18 C -0.06 -1.01 12.30 67.18 0.83 -0.18 15 19 O 0.09 2.49 11.20 71.55 0.80 3.29 15 20 N -0.39 -14.20 11.48 -49.57 -0.57 -14.77 15 21 H 0.06 3.73 6.07 -2.39 -0.01 3.71 15 22 H 0.04 2.14 8.14 -2.38 -0.02 2.12 15 23 H 0.01 0.45 8.14 -2.39 -0.02 0.43 15 24 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 25 H 0.41 13.71 8.54 -92.71 -0.79 12.92 15 26 H 0.15 2.73 8.14 -2.39 -0.02 2.71 15 27 H 0.13 2.91 8.14 -2.39 -0.02 2.89 15 28 H 0.21 2.35 8.06 -2.91 -0.02 2.32 15 29 H 0.27 1.44 8.06 -2.91 -0.02 1.41 15 Total: -1.00 -79.49 261.55 4.23 -75.25 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.38 Total: 12.97 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 3.66 Total: -4.19 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -2.59 Total: -100.27 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: 0.75 Total: -28.28 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.49 4.23 -75.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260233192.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.033 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds