Wall clock time and date at job start Mon Mar 30 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46762 * 359.97438 * 7 6 5 9 9 C 1.50694 * 109.47566 * 119.99841 * 7 6 5 10 10 H 1.08005 * 119.99842 * 0.02562 * 9 7 6 11 11 C 1.37882 * 120.00318 * 179.97438 * 9 7 6 12 12 N 1.31519 * 119.99698 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 120.00066 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46996 * 60.00253 * 13 11 9 15 15 H 1.48500 * 109.47310 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47315 * 300.00640 * 13 11 9 17 17 C 1.52999 * 109.47143 * 240.00460 * 7 6 5 18 18 F 1.39899 * 109.47351 * 179.97438 * 17 7 6 19 19 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 20 20 C 1.38143 * 120.05412 * 359.97438 * 19 6 5 21 21 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 22 22 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 23 23 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 25 25 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 26 26 H 0.96992 * 119.99418 * 179.97438 * 12 11 9 27 27 H 1.09007 * 109.47101 * 299.99561 * 17 7 6 28 28 H 1.08999 * 109.47711 * 59.99769 * 17 7 6 29 29 H 1.08001 * 119.97543 * 180.02562 * 19 6 5 30 30 H 1.08001 * 120.02739 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0668 4.8755 -0.0017 9 6 3.5819 5.7872 -1.2342 10 1 2.8976 5.3476 -1.9448 11 6 4.0848 7.0522 -1.4533 12 7 4.9177 7.5877 -0.5877 13 14 3.5830 8.0054 -2.9793 14 1 2.1108 8.1996 -2.9799 15 1 4.2573 9.3285 -2.9805 16 1 3.9825 7.2457 -4.1911 17 6 3.5746 5.8016 1.2455 18 9 4.2101 7.0479 1.2447 19 6 1.9212 3.6047 -0.0021 20 6 1.2916 2.3751 -0.0016 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 4.0208 0.3798 0.0016 25 1 5.1346 2.5749 0.0050 26 1 5.2717 8.4774 -0.7420 27 1 2.4939 5.9445 1.2449 28 1 3.8671 5.2456 2.1362 29 1 1.3343 4.5113 -0.0038 30 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260303510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:44 Heat of formation + Delta-G solvation = -48.727650 kcal Electronic energy + Delta-G solvation = -15121.252641 eV Core-core repulsion = 12411.014434 eV Total energy + Delta-G solvation = -2710.238206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.48669 -39.66447 -37.30078 -33.57600 -31.22520 -30.48043 -28.13619 -26.48633 -24.67008 -22.57111 -21.67850 -19.81744 -17.75912 -16.37078 -15.67283 -15.48714 -15.23067 -14.33661 -14.12248 -13.84640 -13.57874 -13.22885 -12.83433 -12.71205 -12.20108 -11.94726 -11.72184 -11.13620 -10.79141 -10.68879 -10.57819 -10.38159 -9.99771 -9.54604 -9.28587 -8.83439 -8.42789 -8.25637 -7.40196 -5.79743 -3.96471 1.91171 2.06473 3.34880 3.39778 3.42090 3.56147 4.35325 4.51477 5.11482 5.22842 5.30793 5.35176 5.43500 5.51402 5.79973 5.96906 6.07140 6.21744 6.26085 6.38561 6.58637 6.82140 6.83102 6.96986 7.15640 7.28671 7.53305 7.80656 7.83719 7.97773 8.33102 8.97120 9.62695 11.09890 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.007474 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.388194 B = 3745.281550 C = 4065.125047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.326 6.326 3 C 0.095 3.905 4 C -0.153 4.153 5 C -0.090 4.090 6 C -0.066 4.066 7 C 0.051 3.949 8 H 0.041 0.959 9 C -0.535 4.535 10 H 0.058 0.942 11 C 0.064 3.936 12 N -0.840 5.840 13 Si 0.891 3.109 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 C 0.084 3.916 18 F -0.172 7.172 19 C -0.075 4.075 20 C -0.209 4.209 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.092 0.908 24 H 0.120 0.880 25 H 0.124 0.876 26 H 0.255 0.745 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.125 0.875 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.382 -9.975 2.456 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.240 6.240 3 C 0.051 3.949 4 C -0.172 4.172 5 C -0.108 4.108 6 C -0.067 4.067 7 C 0.032 3.968 8 H 0.059 0.941 9 C -0.573 4.573 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.475 5.475 13 Si 0.719 3.281 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.028 3.972 18 F -0.153 7.153 19 C -0.093 4.093 20 C -0.227 4.227 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.138 0.862 25 H 0.142 0.858 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.143 0.857 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.155 -9.945 2.507 11.961 hybrid contribution -0.571 0.729 -0.879 1.276 sum -6.727 -9.216 1.628 11.525 Atomic orbital electron populations 1.22930 0.79307 1.03047 1.01169 1.85995 1.20664 1.27688 1.89690 1.18893 0.92317 0.83652 1.00054 1.20299 0.91127 0.98276 1.07468 1.20966 0.99821 0.91033 0.98968 1.20342 0.93430 0.96419 0.96485 1.18415 0.96268 0.87230 0.94844 0.94075 1.20811 1.29610 1.00406 1.06437 0.92412 1.25056 0.95573 0.97502 0.96094 1.70578 1.29264 1.15657 1.32027 0.86684 0.78647 0.79106 0.83644 1.20406 1.21326 1.20347 1.22077 0.95279 0.82735 0.97123 1.92979 1.83231 1.42088 1.97002 1.20907 0.94775 0.96416 0.97170 1.21164 0.99233 0.92647 1.09695 0.93027 0.92987 0.88942 0.86173 0.85775 0.93446 0.94297 0.96270 0.85682 0.86419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.33 -4.95 10.50 -19.42 -0.20 -5.15 16 3 C 0.09 1.61 6.69 -39.22 -0.26 1.35 16 4 C -0.15 -2.64 9.99 -39.44 -0.39 -3.03 16 5 C -0.09 -1.69 9.66 -39.61 -0.38 -2.08 16 6 C -0.07 -1.40 4.74 -104.60 -0.50 -1.90 16 7 C 0.05 1.26 2.43 -92.93 -0.23 1.03 16 8 H 0.04 1.09 7.87 -51.92 -0.41 0.68 16 9 C -0.53 -14.56 8.24 -34.44 -0.28 -14.85 16 10 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 11 C 0.06 1.77 5.20 -17.82 -0.09 1.68 16 12 N -0.84 -24.34 9.50 55.43 0.53 -23.82 16 13 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.08 2.00 6.75 37.16 0.25 2.25 16 18 F -0.17 -4.73 12.95 2.25 0.03 -4.70 16 19 C -0.07 -1.44 8.70 -39.61 -0.34 -1.79 16 20 C -0.21 -3.53 9.04 -39.43 -0.36 -3.89 16 21 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 22 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 23 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 25 H 0.12 2.17 7.94 -52.49 -0.42 1.75 16 26 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.04 0.88 7.38 -51.92 -0.38 0.50 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.13 2.41 7.57 -52.49 -0.40 2.01 16 30 H 0.12 1.66 6.30 -52.49 -0.33 1.33 16 LS Contribution 257.70 15.07 3.88 3.88 Total: -1.00 -30.11 257.70 -5.92 -36.03 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: -3.53 Total: -2.81 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -1.60 Total: -19.90 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.53 Total: -23.82 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.20 Total: -5.15 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.03 Total: -4.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.11 -5.92 -36.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.698 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds