Wall clock time and date at job start Mon Mar 30 2020 03:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35898 * 117.00254 * 2 1 4 4 C 1.38725 * 120.05592 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94620 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05239 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94622 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46762 * 359.97438 * 7 6 5 9 9 C 1.50694 * 109.47566 * 119.99841 * 7 6 5 10 10 H 1.08005 * 119.99842 * 0.02562 * 9 7 6 11 11 C 1.37882 * 120.00318 * 179.97438 * 9 7 6 12 12 N 1.31519 * 119.99698 * 0.02562 * 11 9 7 13 13 Si 1.86793 * 120.00066 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46996 * 60.00253 * 13 11 9 15 15 H 1.48500 * 109.47310 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47315 * 300.00640 * 13 11 9 17 17 C 1.52999 * 109.47143 * 240.00460 * 7 6 5 18 18 F 1.39899 * 109.47351 * 179.97438 * 17 7 6 19 19 C 1.38265 * 120.11333 * 0.02562 * 6 5 4 20 20 C 1.38143 * 120.05412 * 359.97438 * 19 6 5 21 21 H 1.09001 * 109.47097 * 299.99927 * 1 2 3 22 22 H 1.09005 * 109.47182 * 59.99870 * 1 2 3 23 23 H 1.09001 * 109.47459 * 179.97438 * 1 2 3 24 24 H 1.08000 * 120.03004 * 359.96283 * 4 3 2 25 25 H 1.08002 * 119.97573 * 179.72233 * 5 4 3 26 26 H 0.96992 * 119.99418 * 179.97438 * 12 11 9 27 27 H 1.09007 * 109.47101 * 299.99561 * 17 7 6 28 28 H 1.08999 * 109.47711 * 59.99769 * 17 7 6 29 29 H 1.08001 * 119.97543 * 180.02562 * 19 6 5 30 30 H 1.08001 * 120.02739 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0668 4.8755 -0.0017 9 6 3.5819 5.7872 -1.2342 10 1 2.8976 5.3476 -1.9448 11 6 4.0848 7.0522 -1.4533 12 7 4.9177 7.5877 -0.5877 13 14 3.5830 8.0054 -2.9793 14 1 2.1108 8.1996 -2.9799 15 1 4.2573 9.3285 -2.9805 16 1 3.9825 7.2457 -4.1911 17 6 3.5746 5.8016 1.2455 18 9 4.2101 7.0479 1.2447 19 6 1.9212 3.6047 -0.0021 20 6 1.2916 2.3751 -0.0016 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 4.0208 0.3798 0.0016 25 1 5.1346 2.5749 0.0050 26 1 5.2717 8.4774 -0.7420 27 1 2.4939 5.9445 1.2449 28 1 3.8671 5.2456 2.1362 29 1 1.3343 4.5113 -0.0038 30 1 0.2130 2.3202 -0.0025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260303510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:43 Heat of formation + Delta-G solvation = -65.807423 kcal Electronic energy + Delta-G solvation = -15121.993275 eV Core-core repulsion = 12411.014434 eV Total energy + Delta-G solvation = -2710.978841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -47.53412 -40.95583 -38.65823 -35.44801 -33.06836 -31.87370 -29.49601 -27.69467 -26.72948 -24.14088 -23.12460 -21.48027 -18.98971 -18.34190 -17.17519 -16.95682 -16.53758 -16.10765 -15.84769 -15.59771 -15.30234 -14.55587 -14.49075 -14.21368 -13.93246 -13.43104 -13.06431 -12.72768 -12.63918 -12.43250 -12.11269 -11.93344 -11.66197 -11.39766 -11.17952 -10.77970 -10.34756 -9.82545 -8.85200 -7.89824 -6.12101 0.51256 0.63061 1.43144 1.44000 1.51829 2.45640 2.47411 2.95787 3.23852 3.98157 4.05563 4.25173 4.38323 4.41405 4.45170 4.52406 4.62979 4.63575 4.77132 4.83472 4.95881 5.12292 5.29178 5.43622 5.52307 5.72299 5.81896 5.93176 6.07255 6.31029 6.57073 6.86918 7.49558 8.98553 Molecular weight = 224.10amu Principal moments of inertia in cm(-1) A = 0.037606 B = 0.007474 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.388194 B = 3745.281550 C = 4065.125047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.102 3.898 4 C -0.154 4.154 5 C -0.096 4.096 6 C -0.095 4.095 7 C 0.053 3.947 8 H 0.011 0.989 9 C -0.546 4.546 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.870 5.870 13 Si 0.951 3.049 14 H -0.271 1.271 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.079 3.921 18 F -0.195 7.195 19 C -0.083 4.083 20 C -0.203 4.203 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.122 0.878 24 H 0.143 0.857 25 H 0.128 0.872 26 H 0.252 0.748 27 H 0.049 0.951 28 H 0.044 0.956 29 H 0.120 0.880 30 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -11.560 2.112 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.057 3.943 4 C -0.173 4.173 5 C -0.114 4.114 6 C -0.095 4.095 7 C 0.034 3.966 8 H 0.029 0.971 9 C -0.584 4.584 10 H 0.071 0.929 11 C -0.189 4.189 12 N -0.506 5.506 13 Si 0.777 3.223 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.024 3.976 18 F -0.176 7.176 19 C -0.102 4.102 20 C -0.221 4.221 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.140 0.860 24 H 0.161 0.839 25 H 0.146 0.854 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.814 -11.548 2.162 14.110 hybrid contribution -0.137 1.060 -0.748 1.305 sum -7.951 -10.488 1.414 13.237 Atomic orbital electron populations 1.23310 0.76793 1.05436 1.02030 1.86003 1.23217 1.26465 1.89163 1.19024 0.92436 0.84465 0.98394 1.20516 0.91857 0.98287 1.06627 1.21027 1.00114 0.91200 0.99076 1.20096 0.94357 0.95218 0.99842 1.18252 0.94741 0.89309 0.94289 0.97137 1.21129 1.29167 1.00778 1.07308 0.92924 1.25800 0.95725 0.98578 0.98790 1.70740 1.30402 1.15740 1.33680 0.85731 0.78531 0.77733 0.80304 1.19653 1.21116 1.19927 1.22180 0.95685 0.81808 0.97958 1.92925 1.83754 1.43738 1.97150 1.20890 0.94025 0.97416 0.97825 1.21381 1.00809 0.91529 1.08425 0.91926 0.92263 0.86004 0.83913 0.85423 0.93803 0.93275 0.93836 0.86240 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.96 10.50 -92.40 -0.97 -9.93 16 3 C 0.10 3.17 6.69 22.50 0.15 3.32 16 4 C -0.15 -5.01 9.99 22.36 0.22 -4.78 16 5 C -0.10 -3.58 9.66 22.25 0.22 -3.36 16 6 C -0.09 -3.99 4.74 -19.85 -0.09 -4.09 16 7 C 0.05 2.66 2.43 -12.29 -0.03 2.63 16 8 H 0.01 0.58 7.87 -2.38 -0.02 0.56 16 9 C -0.55 -30.18 8.24 25.60 0.21 -29.97 16 10 H 0.05 2.89 7.60 -2.91 -0.02 2.87 16 11 C 0.01 0.79 5.20 84.66 0.44 1.23 16 12 N -0.87 -51.45 9.50 21.45 0.20 -51.25 16 13 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 15 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 17 C 0.08 3.83 6.75 71.98 0.49 4.31 16 18 F -0.19 -10.93 12.95 44.97 0.58 -10.35 16 19 C -0.08 -3.15 8.70 22.25 0.19 -2.96 16 20 C -0.20 -6.35 9.04 22.37 0.20 -6.14 16 21 H 0.06 0.98 7.67 -2.39 -0.02 0.96 16 22 H 0.06 0.97 7.66 -2.38 -0.02 0.95 16 23 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 25 H 0.13 4.51 7.94 -2.91 -0.02 4.49 16 26 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 27 H 0.05 2.23 7.38 -2.38 -0.02 2.22 16 28 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.12 4.55 7.57 -2.91 -0.02 4.52 16 30 H 0.15 3.63 6.30 -2.91 -0.02 3.61 16 Total: -1.00 -64.43 257.70 6.08 -58.35 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.13 Total: 5.15 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 3.11 Total: -38.38 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.20 Total: -51.25 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -0.97 Total: -9.93 kcal Atomic # 9 Polarization: -10.93 SS G_CDS: 0.58 Total: -10.35 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -64.43 6.08 -58.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260303510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.461 kcal (2) G-P(sol) polarization free energy of solvation -64.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds